BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00004342
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF76467.1|AC020622_1 Contains similarity to excision repair ...   193   1e-47
ref|NP_171691.2| 5'-3' exonuclease-like protein [Arabidopsis tha...   193   1e-47
ref|NP_001184887.1| 5'-3' exonuclease-like protein [Arabidopsis ...   192   3e-47
ref|XP_002889348.1| hypothetical protein ARALYDRAFT_311256 [Arab...   192   3e-47
ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago...   189   2e-46

>gb|AAF76467.1|AC020622_1 Contains similarity to excision repair protein ERCC5 from Homo
           sapiens gi|1082359 and contains XPG N-terminal PF|00752
           and XPG I-region PF|00867 domains [Arabidopsis thaliana]
          Length = 497

 Score =  193 bits (491), Expect = 1e-47
 Identities = 91/122 (74%), Positives = 103/122 (84%)
 Frame = -2

Query: 367 VSGNFWDLLKPYAQAKGFDFLRNKRVAIDLSYWIVQHETAIKSHTLNPHIRLTFFRTINL 188
           V GNFWDLL+PYAQ +GFDFLRNKRVA+DLS+WIVQHETA+K   L PH+RLTFFRTINL
Sbjct: 3   VGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTINL 62

Query: 187 FSRFGASPVFIEDGTPSPLKSQSCIERFFRGSGIDISSLPVAEDGTSVERNHKFLKCVRE 8
           FS+FGA PVF+ DGTPSPLKSQ+ I RFFR SGID  +LPV +DG SVERN  F + VRE
Sbjct: 63  FSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWVRE 122

Query: 7   CV 2
           CV
Sbjct: 123 CV 124


>ref|NP_171691.2| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
           gi|357529503|sp|Q9LPD2.3|GENL1_ARATH RecName: Full=Flap
           endonuclease GEN-like 1 gi|332189224|gb|AEE27345.1|
           5'-3' exonuclease-like protein [Arabidopsis thaliana]
          Length = 599

 Score =  193 bits (491), Expect = 1e-47
 Identities = 91/122 (74%), Positives = 103/122 (84%)
 Frame = -2

Query: 367 VSGNFWDLLKPYAQAKGFDFLRNKRVAIDLSYWIVQHETAIKSHTLNPHIRLTFFRTINL 188
           V GNFWDLL+PYAQ +GFDFLRNKRVA+DLS+WIVQHETA+K   L PH+RLTFFRTINL
Sbjct: 3   VGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTINL 62

Query: 187 FSRFGASPVFIEDGTPSPLKSQSCIERFFRGSGIDISSLPVAEDGTSVERNHKFLKCVRE 8
           FS+FGA PVF+ DGTPSPLKSQ+ I RFFR SGID  +LPV +DG SVERN  F + VRE
Sbjct: 63  FSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWVRE 122

Query: 7   CV 2
           CV
Sbjct: 123 CV 124


>ref|NP_001184887.1| 5'-3' exonuclease-like protein [Arabidopsis thaliana]
           gi|332189225|gb|AEE27346.1| 5'-3' exonuclease-like
           protein [Arabidopsis thaliana]
          Length = 598

 Score =  192 bits (487), Expect = 3e-47
 Identities = 90/121 (74%), Positives = 102/121 (84%)
 Frame = -2

Query: 367 VSGNFWDLLKPYAQAKGFDFLRNKRVAIDLSYWIVQHETAIKSHTLNPHIRLTFFRTINL 188
           V GNFWDLL+PYAQ +GFDFLRNKRVA+DLS+WIVQHETA+K   L PH+RLTFFRTINL
Sbjct: 3   VGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTINL 62

Query: 187 FSRFGASPVFIEDGTPSPLKSQSCIERFFRGSGIDISSLPVAEDGTSVERNHKFLKCVRE 8
           FS+FGA PVF+ DGTPSPLKSQ+ I RFFR SGID  +LPV +DG SVERN  F + VRE
Sbjct: 63  FSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWVRE 122

Query: 7   C 5
           C
Sbjct: 123 C 123


>ref|XP_002889348.1| hypothetical protein ARALYDRAFT_311256 [Arabidopsis lyrata subsp.
           lyrata] gi|297335190|gb|EFH65607.1| hypothetical protein
           ARALYDRAFT_311256 [Arabidopsis lyrata subsp. lyrata]
          Length = 590

 Score =  192 bits (487), Expect = 3e-47
 Identities = 89/122 (72%), Positives = 103/122 (84%)
 Frame = -2

Query: 367 VSGNFWDLLKPYAQAKGFDFLRNKRVAIDLSYWIVQHETAIKSHTLNPHIRLTFFRTINL 188
           V GNFWDLL+PYAQ +GFD+LRNKRVA+DLS+WIVQHETA+K   L PH+RLTFFRTINL
Sbjct: 3   VGGNFWDLLRPYAQQRGFDYLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTINL 62

Query: 187 FSRFGASPVFIEDGTPSPLKSQSCIERFFRGSGIDISSLPVAEDGTSVERNHKFLKCVRE 8
           FS+FGA PVF+ DGTPSPLKSQ+ I RFFR SGID  +LPV +DG SVERN  F + V+E
Sbjct: 63  FSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFCEWVKE 122

Query: 7   CV 2
           CV
Sbjct: 123 CV 124


>ref|XP_003623847.1| Flap endonuclease GEN-like protein [Medicago truncatula]
           gi|124360235|gb|ABN08248.1| Helix-hairpin-helix motif,
           class 2 [Medicago truncatula]
           gi|355498862|gb|AES80065.1| Flap endonuclease GEN-like
           protein [Medicago truncatula]
          Length = 612

 Score =  189 bits (480), Expect = 2e-46
 Identities = 88/122 (72%), Positives = 103/122 (84%)
 Frame = -2

Query: 367 VSGNFWDLLKPYAQAKGFDFLRNKRVAIDLSYWIVQHETAIKSHTLNPHIRLTFFRTINL 188
           V GNFW+LLKPY++ +GFDFLRNKRVAIDLS+WIVQH  AIK+H   PH+RLTFFRTINL
Sbjct: 3   VGGNFWELLKPYSRNEGFDFLRNKRVAIDLSFWIVQHNNAIKTHVKKPHLRLTFFRTINL 62

Query: 187 FSRFGASPVFIEDGTPSPLKSQSCIERFFRGSGIDISSLPVAEDGTSVERNHKFLKCVRE 8
           FS+FGA PVF+ DGTPSPLKSQ+ I RFFR SGI+ +SLPVAE+G S  RN  F +CV+E
Sbjct: 63  FSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIESTSLPVAEEGVSAGRNSTFSRCVQE 122

Query: 7   CV 2
           CV
Sbjct: 123 CV 124