BLASTX nr result
ID: Bupleurum21_contig00004176
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00004176
(1846 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ... 513 e-143
emb|CBI32760.3| unnamed protein product [Vitis vinifera] 513 e-143
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [... 476 e-132
ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|2... 468 e-129
ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-... 465 e-128
>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 513 bits (1320), Expect = e-143
Identities = 284/518 (54%), Positives = 360/518 (69%), Gaps = 8/518 (1%)
Frame = +1
Query: 43 QQLPASVLVQEQRDD-RPL---LYVNRTPQDALEGKQMETRLLSGEYGTVDSENYVNQFQ 210
++ P SVL+QEQRD+ RP L RT Q LE +QME + + E + D Y+ F+
Sbjct: 58 RKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFE 117
Query: 211 RTVXXXXXXXXXXXXXXMG-RTXXXXXXXXXXXXXXKQSTEMKPSDVIXXXXXXXXXXXX 387
R + G ++ + S ++KP DV+
Sbjct: 118 RQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQ 177
Query: 388 XXXXXXR-QTFESNPDESLTSRLG--SSRSIPVEQERIVRSTRLMERQSKRRRVPKQDVI 558
+ ++ ++S + LG SS ++P+E E+ VRSTRL+ER+SK+RR PK V
Sbjct: 178 AVSLYENAKLLGADLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRRNPK--VA 234
Query: 559 VHETNSFRITEVQRSKSKASDPDDPLRLFLYQPETKQLLTAVEESKLIVQVQELMKLEEV 738
VHE + R EVQR ++ DP DPLRLFL+ PET++LLTA EES+LIVQ+QELM+LEEV
Sbjct: 235 VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEV 294
Query: 739 KGRLHAQFGREPTLCEWAEAAGLSRRALKSQICCSNNSREKLIYANFRLVVHIAKQYQGR 918
K RL + REPT+ EWAEA GLS + L+SQ+ N SR+KLIYAN R+VVHIAKQYQGR
Sbjct: 295 KKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGR 354
Query: 919 GLNLQDLMQEGSMGLMHSVQKFKPQAGCRFATYAYWWIRQSVRRAIFQHSRTIRLPENVY 1098
GLNLQDL+QEGSMGLM+SV+KFKP AGCRFA+YAYWWIRQ+VR+AIFQHSRTIRLPEN+Y
Sbjct: 355 GLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMY 414
Query: 1099 DLLNKVKEAKRQCMQEGYHQPTKEQIAVRAKITVDKLQMLQYSVRTPLSMQQPVWADQST 1278
LL KVKEAKR +QEG+H PTKE+IA R IT++KLQ L R PLSMQQPVWADQ T
Sbjct: 415 SLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDT 474
Query: 1279 TFQEITADTTIETPKTSAEKQLMRQHTRNLLGILNPRERKIMQMRYGFDNGKPKSLSAIG 1458
TFQE+TADT IE P S KQLMRQH RNLL +L P+ER+I+++R+G +G P++LS IG
Sbjct: 475 TFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIG 534
Query: 1459 VVFGLSKERVRQLETRAMFKLKKRLVSEGLDAYEELLI 1572
+VFG SKERVRQLE RA+ KLK+ L S GL++Y +LL+
Sbjct: 535 LVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572
>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 513 bits (1320), Expect = e-143
Identities = 284/518 (54%), Positives = 360/518 (69%), Gaps = 8/518 (1%)
Frame = +1
Query: 43 QQLPASVLVQEQRDD-RPL---LYVNRTPQDALEGKQMETRLLSGEYGTVDSENYVNQFQ 210
++ P SVL+QEQRD+ RP L RT Q LE +QME + + E + D Y+ F+
Sbjct: 47 RKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFE 106
Query: 211 RTVXXXXXXXXXXXXXXMG-RTXXXXXXXXXXXXXXKQSTEMKPSDVIXXXXXXXXXXXX 387
R + G ++ + S ++KP DV+
Sbjct: 107 RQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQ 166
Query: 388 XXXXXXR-QTFESNPDESLTSRLG--SSRSIPVEQERIVRSTRLMERQSKRRRVPKQDVI 558
+ ++ ++S + LG SS ++P+E E+ VRSTRL+ER+SK+RR PK V
Sbjct: 167 AVSLYENAKLLGADLEDSPSPSLGAISSPNLPLE-EKTVRSTRLLERRSKKRRNPK--VA 223
Query: 559 VHETNSFRITEVQRSKSKASDPDDPLRLFLYQPETKQLLTAVEESKLIVQVQELMKLEEV 738
VHE + R EVQR ++ DP DPLRLFL+ PET++LLTA EES+LIVQ+QELM+LEEV
Sbjct: 224 VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEV 283
Query: 739 KGRLHAQFGREPTLCEWAEAAGLSRRALKSQICCSNNSREKLIYANFRLVVHIAKQYQGR 918
K RL + REPT+ EWAEA GLS + L+SQ+ N SR+KLIYAN R+VVHIAKQYQGR
Sbjct: 284 KKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGR 343
Query: 919 GLNLQDLMQEGSMGLMHSVQKFKPQAGCRFATYAYWWIRQSVRRAIFQHSRTIRLPENVY 1098
GLNLQDL+QEGSMGLM+SV+KFKP AGCRFA+YAYWWIRQ+VR+AIFQHSRTIRLPEN+Y
Sbjct: 344 GLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMY 403
Query: 1099 DLLNKVKEAKRQCMQEGYHQPTKEQIAVRAKITVDKLQMLQYSVRTPLSMQQPVWADQST 1278
LL KVKEAKR +QEG+H PTKE+IA R IT++KLQ L R PLSMQQPVWADQ T
Sbjct: 404 SLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDT 463
Query: 1279 TFQEITADTTIETPKTSAEKQLMRQHTRNLLGILNPRERKIMQMRYGFDNGKPKSLSAIG 1458
TFQE+TADT IE P S KQLMRQH RNLL +L P+ER+I+++R+G +G P++LS IG
Sbjct: 464 TFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIG 523
Query: 1459 VVFGLSKERVRQLETRAMFKLKKRLVSEGLDAYEELLI 1572
+VFG SKERVRQLE RA+ KLK+ L S GL++Y +LL+
Sbjct: 524 LVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561
>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 548
Score = 476 bits (1226), Expect = e-132
Identities = 270/519 (52%), Positives = 340/519 (65%), Gaps = 6/519 (1%)
Frame = +1
Query: 34 SSGQQLPASVLVQEQRDD-RPLLYV---NRTPQDALEGKQMETRLLSGEYGTVDSENYVN 201
S + P SVL+QEQRD+ RPLL + ++T Q ++ KQM+ GT D E +
Sbjct: 53 SIARNFPTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDP-------GTSDQEGICS 105
Query: 202 QFQRTVXXXXXXXXXXXXXXMGRTXXXXXXXXXXXXXXKQSTEMKPSDVIXXXXXXXXXX 381
+ + + ++P++VI
Sbjct: 106 DVLDQLI-------------LHSNLSWSLTMQSITTNTDELMVVEPTNVIDLARKALSAS 152
Query: 382 XXXXXXXXRQTFESNPDESLTSRLGSS--RSIPVEQERIVRSTRLMERQSKRRRVPKQDV 555
+ +N D+++++ L + + +E+ + VRSTR +ERQSK RRV K
Sbjct: 153 KEAALLAQKC---ANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKE 209
Query: 556 IVHETNSFRITEVQRSKSKASDPDDPLRLFLYQPETKQLLTAVEESKLIVQVQELMKLEE 735
I HE S R VQ+ ++ DP DPLRLFL+ PETKQLLTA EES+LI QVQ+LM LE
Sbjct: 210 IFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLEN 269
Query: 736 VKGRLHAQFGREPTLCEWAEAAGLSRRALKSQICCSNNSREKLIYANFRLVVHIAKQYQG 915
VK + QFGR+PTL EWA+A GLS ++SQ+ N SREKLI AN R+VVHIAKQYQG
Sbjct: 270 VKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQG 329
Query: 916 RGLNLQDLMQEGSMGLMHSVQKFKPQAGCRFATYAYWWIRQSVRRAIFQHSRTIRLPENV 1095
RGL+LQDL+QEGSMGLM S++KFKPQ GCRFATYAYWWIRQ+VR+AIFQHSRTIRLPENV
Sbjct: 330 RGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENV 389
Query: 1096 YDLLNKVKEAKRQCMQEGYHQPTKEQIAVRAKITVDKLQMLQYSVRTPLSMQQPVWADQS 1275
Y L KV EAKR + EG H PTKE++A R IT +L+ L Y R PLSMQQ VWADQ
Sbjct: 390 YHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQE 449
Query: 1276 TTFQEITADTTIETPKTSAEKQLMRQHTRNLLGILNPRERKIMQMRYGFDNGKPKSLSAI 1455
TTFQEITAD +E P+ KQLMR+H +LL ILNPRERKI+++RYG ++GK KSLS I
Sbjct: 450 TTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEI 509
Query: 1456 GVVFGLSKERVRQLETRAMFKLKKRLVSEGLDAYEELLI 1572
G VFGLSKERVRQLE+RA++KLK+ L S GL+AY +LL+
Sbjct: 510 GSVFGLSKERVRQLESRALYKLKQCLASHGLEAYADLLV 548
>ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|222833385|gb|EEE71862.1|
predicted protein [Populus trichocarpa]
Length = 535
Score = 468 bits (1203), Expect = e-129
Identities = 267/518 (51%), Positives = 335/518 (64%), Gaps = 6/518 (1%)
Frame = +1
Query: 34 SSGQQLPASVLVQEQRDD-RPLLYV---NRTPQDALEGKQMETRLLSGEYGTVDSE--NY 195
S+ Q P SVL+QEQRD+ RPL + +R Q L+ ++ E SG G E
Sbjct: 46 STAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGT-SGHEGKDSDELDQL 104
Query: 196 VNQFQRTVXXXXXXXXXXXXXXMGRTXXXXXXXXXXXXXXKQSTEMKPSDVIXXXXXXXX 375
V F+ + + +++P++VI
Sbjct: 105 VENFEYQLHHWPAYWNLTD----------------------KLIDVEPTNVINLAKRALS 142
Query: 376 XXXXXXXXXXRQTFESNPDESLTSRLGSSRSIPVEQERIVRSTRLMERQSKRRRVPKQDV 555
T N + SS S +E+ +IVRS R + RQS RR PK
Sbjct: 143 ASKHAAFLADNNTDLDNLAST------SSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKD 196
Query: 556 IVHETNSFRITEVQRSKSKASDPDDPLRLFLYQPETKQLLTAVEESKLIVQVQELMKLEE 735
++ ET + ++Q+ S+ DP+DPLRLFL+ PETKQLLTA EE +LI Q+Q+LM LE
Sbjct: 197 LIFETYDSKSADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEG 256
Query: 736 VKGRLHAQFGREPTLCEWAEAAGLSRRALKSQICCSNNSREKLIYANFRLVVHIAKQYQG 915
VK RL +QFGREPTL EWA+A GLS LK Q+ N SREKLI AN R+VVHIAK+YQ
Sbjct: 257 VKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQN 316
Query: 916 RGLNLQDLMQEGSMGLMHSVQKFKPQAGCRFATYAYWWIRQSVRRAIFQHSRTIRLPENV 1095
RGL LQDL+QEG++GLM S++KFKPQAGCRFATYAYWWIRQ++ +AIFQHSRTIRLPENV
Sbjct: 317 RGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENV 376
Query: 1096 YDLLNKVKEAKRQCMQEGYHQPTKEQIAVRAKITVDKLQMLQYSVRTPLSMQQPVWADQS 1275
Y LL KV EAKR +QEG HQPT E+IA R I +DKL+ L RTPLSMQQ VW+DQ+
Sbjct: 377 YGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQN 436
Query: 1276 TTFQEITADTTIETPKTSAEKQLMRQHTRNLLGILNPRERKIMQMRYGFDNGKPKSLSAI 1455
TTFQEITADT IE P S KQLMR+H R LL IL+ +ER+I+++R+G ++GK KSLS I
Sbjct: 437 TTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEI 496
Query: 1456 GVVFGLSKERVRQLETRAMFKLKKRLVSEGLDAYEELL 1569
G VFGLSKERVRQLE+RA++KLK+ + S GLDAY +LL
Sbjct: 497 GNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534
>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 465 bits (1196), Expect = e-128
Identities = 259/527 (49%), Positives = 352/527 (66%), Gaps = 11/527 (2%)
Frame = +1
Query: 25 SSLSSGQQLPASVLVQEQRDD-RPLLYVNR---TPQDALEGKQMETRLLSGEYGTVDSEN 192
SS S Q PASVL+ EQRD+ RPLL++++ T Q L +QM+T + E T +++
Sbjct: 49 SSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQ 108
Query: 193 YVNQFQRTVXXXXXXXXXXXXXXMGRTXXXXXXXXXXXXXXKQSTEMKPSDVIXXXXXXX 372
V F++ + +G ++ ++ + V
Sbjct: 109 VVLDFRKHLHHWPNLQLTSSQ--IGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALS 166
Query: 373 XXXXXXXXXXXRQTFESNPDESLTSRLGSSRSIP-VEQERIVRSTRLMERQSKRRRVPKQ 549
++ ++ D+ S +S + P + + + VRSTRL+ER+SK+R+VPK
Sbjct: 167 TSKQESSVVEDLKSIKA--DDVPFSLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKS 224
Query: 550 DVIVHETNSFRITEVQ------RSKSKASDPDDPLRLFLYQPETKQLLTAVEESKLIVQV 711
VI ET R + Q + K++ D DDPLRLFL+ PETKQLLT +ES+LI Q+
Sbjct: 225 KVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQI 284
Query: 712 QELMKLEEVKGRLHAQFGREPTLCEWAEAAGLSRRALKSQICCSNNSREKLIYANFRLVV 891
Q+L++LEEVK L +QFGREPT+ EWAE AGL+ R L+SQ+ N SREKLI AN R+VV
Sbjct: 285 QDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVV 344
Query: 892 HIAKQYQGRGLNLQDLMQEGSMGLMHSVQKFKPQAGCRFATYAYWWIRQSVRRAIFQHSR 1071
H+AK YQGRGL+LQDL+QEGSMGLM SV+KF P AG RF YA+WWIRQ++R+A+F+HSR
Sbjct: 345 HVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSR 404
Query: 1072 TIRLPENVYDLLNKVKEAKRQCMQEGYHQPTKEQIAVRAKITVDKLQMLQYSVRTPLSMQ 1251
TIRLPE V+ LL KV EAK+ +QEG PTKE++A R +TV+K+ L +S R P+SMQ
Sbjct: 405 TIRLPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQ 464
Query: 1252 QPVWADQSTTFQEITADTTIETPKTSAEKQLMRQHTRNLLGILNPRERKIMQMRYGFDNG 1431
Q VWADQ+TTFQEITAD T+E + EKQLMR+H N+L +L+P+ER+I+++RYGF++G
Sbjct: 465 QTVWADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDG 524
Query: 1432 KPKSLSAIGVVFGLSKERVRQLETRAMFKLKKRLVSEGLDAYEELLI 1572
+ KSLS IG +FGLSKERVRQLE RA++KLKK LV +GLDAY +LL+
Sbjct: 525 EQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 571