BLASTX nr result

ID: Bupleurum21_contig00003954 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00003954
         (1160 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003519672.1| PREDICTED: uncharacterized protein LOC100799...   418   e-114
ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246...   415   e-113
ref|XP_003544158.1| PREDICTED: uncharacterized protein LOC100795...   408   e-111
ref|XP_003617976.1| Heterogeneous nuclear ribonucleoprotein A1, ...   397   e-108
ref|XP_003631031.1| Heterogeneous nuclear ribonucleoprotein A1 [...   395   e-107

>ref|XP_003519672.1| PREDICTED: uncharacterized protein LOC100799330 [Glycine max]
          Length = 475

 Score =  418 bits (1074), Expect = e-114
 Identities = 203/339 (59%), Positives = 239/339 (70%)
 Frame = -1

Query: 1160 MYDHNTQRPRGFGFITYDSEDAVDKVLLKTFHELNGKMVEVKRAVPKDLSPSPIRSPLGG 981
            MYDHNTQRPRGFGFITYDSE+AVDKVLLKTFHELNGKMVEVKRAVPK+LSP P R+PLGG
Sbjct: 138  MYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGG 197

Query: 980  FNYGLSRLNNFFGGYNQPYSPTAAGGYGIRMDGRFSPITAGRGGFAPFGSGYGMGLNIEA 801
            +NYGL+R+N+F  G+ Q Y+P+  GGYG+R DGRFSP+  GR GFAPFGSGYGM +N E 
Sbjct: 198  YNYGLTRVNSFLNGFTQGYTPSTVGGYGLRADGRFSPVAGGRSGFAPFGSGYGMSMNFEP 257

Query: 800  GLNPNFGGNTNFNSTISYGRGVNPYYVGNSNRFTNSVGYDXXXXXXXXXXXXSPTRNLWS 621
            GLN  FGGN NFNS +SY RGVNPY++G+SNRF + VGY+              TRNLW 
Sbjct: 258  GLNAGFGGNANFNSNLSYDRGVNPYFIGSSNRFGSPVGYESGNGGNNSFFSSV-TRNLWG 316

Query: 620  NVXXXXXXXXXXXXXXXXXXXGVNFANSGLNWGSSPISPQXXXXXXXXXXXXNLGYGGAD 441
            N                    G  F N+G+NWGSS IS Q            NLGYGG D
Sbjct: 317  NGGLSSANSNAYIGSGSGSVGGNTFGNTGVNWGSSAISGQQGGGNNMSQSSGNLGYGGGD 376

Query: 440  NIYNLGGGAYGRNTATTGAQTSSFAAPNGGYDATFSDFYGSSSVYGDNTWRAADSEREDV 261
            N Y LG G YGR+T    A TSS++A NGG D  F+DFY +SSVYGD TWR+++SER+  
Sbjct: 377  NSYGLGTGGYGRSTGAAFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGS 436

Query: 260  GAFGYGLGSGANDLQVKTSPGYVGGYSVSKGQSNRGIAS 144
            G FGYG G  A+D+  K+SPGYVGGY+V+K Q NRGIA+
Sbjct: 437  GPFGYGFGGVASDVSAKSSPGYVGGYTVNKRQPNRGIAT 475


>ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246008 [Vitis vinifera]
          Length = 478

 Score =  415 bits (1067), Expect = e-113
 Identities = 205/343 (59%), Positives = 246/343 (71%), Gaps = 4/343 (1%)
 Frame = -1

Query: 1160 MYDHNTQRPRGFGFITYDSEDAVDKVLLKTFHELNGKMVEVKRAVPKDLSPSPIRSPLGG 981
            MYDHNTQRPRGFGFITY+SE+AVDKVLLKTFHELNGKMVEVKRAVPK+LSP PIRS LGG
Sbjct: 138  MYDHNTQRPRGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPIRSQLGG 197

Query: 980  FNYGLSRLNNFFGGYNQPYSPTAAGGYGIRMDGRFSPITAGRGGFAPFGSGYGMGLNIEA 801
            FNYGLSR+N+F   YNQ Y+P+  GGYG+RMDGRFSPI  GR GF PFGSGYGMG+N E 
Sbjct: 198  FNYGLSRVNSFLSAYNQGYAPSTVGGYGVRMDGRFSPIAGGRSGFPPFGSGYGMGMNFEP 257

Query: 800  GLNPNFGGNTNFNSTISYGRGVNPYYVGNSNRFTNSVGYDXXXXXXXXXXXXSPTRNLWS 621
            GL+ ++GG+ NFN+ ++YGRG+NPYY+GN+NRF +++GYD            S TRNLW 
Sbjct: 258  GLSQSYGGSANFNNNLNYGRGLNPYYIGNTNRFNSTIGYD-GGNGGNSSFFSSATRNLWG 316

Query: 620  NVXXXXXXXXXXXXXXXXXXXGVN----FANSGLNWGSSPISPQXXXXXXXXXXXXNLGY 453
            N                    G      F NSG +WGSS IS Q            NLGY
Sbjct: 317  NGGLNFGTNSATSSAFTGSASGTTGGGAFGNSGTSWGSSLISAQ-GGGSNISSNSGNLGY 375

Query: 452  GGADNIYNLGGGAYGRNTATTGAQTSSFAAPNGGYDATFSDFYGSSSVYGDNTWRAADSE 273
            GG D+ Y LG G YGRN+ T+ A TSS+AA N GYD   ++FY   SVYGD+TWR +++E
Sbjct: 376  GGGDSSYGLGVGGYGRNSGTSVAPTSSYAASNSGYDGALAEFYSGGSVYGDSTWRPSNAE 435

Query: 272  REDVGAFGYGLGSGANDLQVKTSPGYVGGYSVSKGQSNRGIAS 144
            R+  G+FGYGLG+ A+D+  K+SPGYVGGYSV+K QSNRGIA+
Sbjct: 436  RDGSGSFGYGLGNAASDVPAKSSPGYVGGYSVTKRQSNRGIAA 478


>ref|XP_003544158.1| PREDICTED: uncharacterized protein LOC100795907 [Glycine max]
          Length = 479

 Score =  408 bits (1048), Expect = e-111
 Identities = 200/343 (58%), Positives = 238/343 (69%), Gaps = 4/343 (1%)
 Frame = -1

Query: 1160 MYDHNTQRPRGFGFITYDSEDAVDKVLLKTFHELNGKMVEVKRAVPKDLSPSPIRSPLGG 981
            MYDHNTQRPRGFGFITYDSE+AVDKVLLKTFHELNGKMVEVKRAVPK+LSP P R+PLGG
Sbjct: 138  MYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGG 197

Query: 980  FNYGLSRLNNFFGGYNQPYSPTAAGGYGIRMDGRFSPITAGRGGFAPFGSGYGMGLNIEA 801
            +NYGL+R+N+F  G+ Q Y+P+  GGYG+R D RFSP+  GR GFAPFGSGYGM +N E 
Sbjct: 198  YNYGLTRVNSFLNGFTQGYTPSTVGGYGLRADDRFSPVAGGRSGFAPFGSGYGMSMNFEP 257

Query: 800  GLNPNFGGNTNFNSTISYGRGVNPYYVGNSNRFTNSVGYDXXXXXXXXXXXXSPTRNLWS 621
            GLN  FGGN NFNS +SY RG+NPY++G+SNRF + VGY+              TRNLW 
Sbjct: 258  GLNAGFGGNANFNSNLSYDRGINPYFIGSSNRFGSPVGYESGNGGNNSFFSSV-TRNLWG 316

Query: 620  N----VXXXXXXXXXXXXXXXXXXXGVNFANSGLNWGSSPISPQXXXXXXXXXXXXNLGY 453
            N                        G  F N+G+NW SS IS Q            NLGY
Sbjct: 317  NGGLSYGTSSANSNAYIGSGSGSAGGNTFGNTGVNWSSSAISGQQGGGNNMSQSSGNLGY 376

Query: 452  GGADNIYNLGGGAYGRNTATTGAQTSSFAAPNGGYDATFSDFYGSSSVYGDNTWRAADSE 273
            GG DN Y LG G YGR++    A TSS++A NGG D  F+DFY +SSVYGD TWR+++SE
Sbjct: 377  GGGDNNYGLGTGGYGRSSGAIFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSE 436

Query: 272  REDVGAFGYGLGSGANDLQVKTSPGYVGGYSVSKGQSNRGIAS 144
            R+  G FGYGLG  A+D+  K+SPGYVGGY+V+K Q NRGIA+
Sbjct: 437  RDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAT 479


>ref|XP_003617976.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
            [Medicago truncatula] gi|355519311|gb|AET00935.1|
            Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like
            protein [Medicago truncatula]
          Length = 479

 Score =  397 bits (1019), Expect = e-108
 Identities = 196/344 (56%), Positives = 237/344 (68%), Gaps = 5/344 (1%)
 Frame = -1

Query: 1160 MYDHNTQRPRGFGFITYDSEDAVDKVLLKTFHELNGKMVEVKRAVPKDLSPSPIRSPLGG 981
            MYDHNTQRPRGFGFITYDSE+AVD+VLLKTFHELNGKMVEVKRAVPK+LSP P RSPL G
Sbjct: 138  MYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSG 197

Query: 980  FNYGLSRLNNFFGGYNQPYSPTAAGGYGIRMDGRFSPITAGRGGFAPFGSGYGMGLNIEA 801
            +NYGLSR+N+F  G+NQ YSP+  GGYG+R+DGRFSP+  GR  +APFGSGYGMG+N E 
Sbjct: 198  YNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRNAYAPFGSGYGMGMNFEP 257

Query: 800  GLNPNFGGNTNFNSTISYGRGVNPYYVGNSNRFTNSVGYDXXXXXXXXXXXXSPTRNLWS 621
            GL+P FGGN +FN  +SYGRG+NPY++G SNRF + VGY+              TRNLW 
Sbjct: 258  GLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGNGGSNSFFSSV-TRNLWG 316

Query: 620  N----VXXXXXXXXXXXXXXXXXXXGVNFANSGLNWGSSPISPQXXXXXXXXXXXXNLGY 453
            N                        G  F N+G+NW SSPIS               LGY
Sbjct: 317  NGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGGGNNVSQGSGN-LGY 375

Query: 452  GGADNIYNLGGGAYGRNTATTGAQTSSFAAPNGG-YDATFSDFYGSSSVYGDNTWRAADS 276
            GG +N Y LG   YGR++ +T A TSS++  NGG  D  F+DFY ++SVYGD TWR+++S
Sbjct: 376  GGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADFYNNNSVYGDTTWRSSNS 435

Query: 275  EREDVGAFGYGLGSGANDLQVKTSPGYVGGYSVSKGQSNRGIAS 144
            ER+  G FGYGLG   +D+  KTSPGYVGGY+V+K Q NRGI +
Sbjct: 436  ERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRGITT 479


>ref|XP_003631031.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
            gi|355525053|gb|AET05507.1| Heterogeneous nuclear
            ribonucleoprotein A1 [Medicago truncatula]
          Length = 476

 Score =  395 bits (1014), Expect = e-107
 Identities = 195/341 (57%), Positives = 235/341 (68%), Gaps = 5/341 (1%)
 Frame = -1

Query: 1160 MYDHNTQRPRGFGFITYDSEDAVDKVLLKTFHELNGKMVEVKRAVPKDLSPSPIRSPLGG 981
            MYDHNTQRPRGFGFITYDSE+AVD+VLLKTFHELNGKMVEVKRAVPK+LSP P RSPL G
Sbjct: 121  MYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRAVPKELSPGPARSPLSG 180

Query: 980  FNYGLSRLNNFFGGYNQPYSPTAAGGYGIRMDGRFSPITAGRGGFAPFGSGYGMGLNIEA 801
            +NYGLSR+N+F  G+NQ YSP+  GGYG+R+DGRFSP+  GR  +APFGSGYGMG+N E 
Sbjct: 181  YNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRNAYAPFGSGYGMGMNFEP 240

Query: 800  GLNPNFGGNTNFNSTISYGRGVNPYYVGNSNRFTNSVGYDXXXXXXXXXXXXSPTRNLWS 621
            GL+P FGGN +FN  +SYGRG+NPY++G SNRF + VGY+              TRNLW 
Sbjct: 241  GLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGNGGSNSFFSSV-TRNLWG 299

Query: 620  N----VXXXXXXXXXXXXXXXXXXXGVNFANSGLNWGSSPISPQXXXXXXXXXXXXNLGY 453
            N                        G  F N+G+NW SSPIS               LGY
Sbjct: 300  NGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGGGNNVSQGSGN-LGY 358

Query: 452  GGADNIYNLGGGAYGRNTATTGAQTSSFAAPNGG-YDATFSDFYGSSSVYGDNTWRAADS 276
            GG +N Y LG   YGR++ +T A TSS++  NGG  D  F+DFY ++SVYGD TWR+++S
Sbjct: 359  GGGNNGYGLGTEGYGRSSGSTLAPTSSYSTSNGGGVDGAFADFYNNNSVYGDTTWRSSNS 418

Query: 275  EREDVGAFGYGLGSGANDLQVKTSPGYVGGYSVSKGQSNRG 153
            ER+  G FGYGLG   +D+  KTSPGYVGGY+V+K Q NRG
Sbjct: 419  ERDGSGPFGYGLGGAPSDVSAKTSPGYVGGYTVNKRQPNRG 459


Top