BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00002685
         (1059 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-li...   243   6e-62
ref|XP_004140268.1| PREDICTED: replication factor C subunit 1-li...   239   6e-61
ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-li...   201   3e-49
ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-li...   198   2e-48
ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis ...   195   1e-47

>ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus]
          Length = 942

 Score =  243 bits (620), Expect = 6e-62
 Identities = 150/319 (47%), Positives = 174/319 (54%), Gaps = 7/319 (2%)
 Frame = +3

Query: 123  DIRKWFMKHNEKGNGNAATAKAEKPSSLEKTSPASTQQENSGRGGQETSGRRKVSPYFAS 302
            DIRKWFMK ++K NG+ +      PSSLEK++ A      +G  G E++GR+  S YFAS
Sbjct: 3    DIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSASAG----KTGPSGGESAGRQITSKYFAS 58

Query: 303  DXXXXXXXXXXXXXXXXXX-------TPNRXXXXXXXXXXXXXXXFVMPSSKRKGSVAAT 461
            +                         +P                  V+ SSK+  S   T
Sbjct: 59   EKQEAKDAEETEESPAKRKFQKYNEESPKASPLKKSNKVDDNDDDAVLSSSKKNMS-EVT 117

Query: 462  PNKKSKSGAGRGVSKMSVDLDESDEDNVNVKAAKSTPXXXXXXXXXXXMTXXXXXXXXXX 641
            PNKK KSG+G+G+++  V+++ S  D+   K   S                         
Sbjct: 118  PNKKLKSGSGKGITQKPVEIEAS--DDEETKGTDS------------------------- 150

Query: 642  XXXXXXTKSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXFMNFGERKDPPHKGEKEVPEGA 821
                    S K                           FMNFGERKDPPHKGEKEVPEGA
Sbjct: 151  --------SLKPSGRGRGGKGSSAATIGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGA 202

Query: 822  PDCLANLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTNYLLCDEDIGGRKSSKAK 1001
            PDCLA LTFVISGTLDSLEREEAEDLIKRHGGR+TGSVSKKTNYLLCDEDIGGRKSSKAK
Sbjct: 203  PDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAK 262

Query: 1002 ELGTGFLTEDGLFDMIRAS 1058
            ELGTGFLTEDGLFDMIRAS
Sbjct: 263  ELGTGFLTEDGLFDMIRAS 281


>ref|XP_004140268.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus]
          Length = 981

 Score =  239 bits (611), Expect = 6e-61
 Identities = 148/331 (44%), Positives = 173/331 (52%), Gaps = 19/331 (5%)
 Frame = +3

Query: 123  DIRKWFMKHNEKGNGNAATAKAEKPSSLEKTSPASTQQENSGRGGQETSGRRKVSPYFAS 302
            DIRKWFMK ++K NG+ +      PSSLEK++ A      +G  G E++GR+  S YFAS
Sbjct: 3    DIRKWFMKAHDKDNGSGSKKAKPAPSSLEKSASAG----KTGPSGGESAGRQITSKYFAS 58

Query: 303  DXXXXXXXXXXXXXXXXXXTPN-------------------RXXXXXXXXXXXXXXXFVM 425
            +                  +P                    +                 +
Sbjct: 59   EKQEAKDAEETEVLPIIRKSPRDTKESPAKRKFQKYNEESPKASPLKKSNKVDDNDDDAV 118

Query: 426  PSSKRKGSVAATPNKKSKSGAGRGVSKMSVDLDESDEDNVNVKAAKSTPXXXXXXXXXXX 605
             SS +K     TPNKK KSG+G+G+++  V+++ S  D+   K   S             
Sbjct: 119  LSSSKKNMSEVTPNKKLKSGSGKGITQKPVEIEAS--DDEETKGTDS------------- 163

Query: 606  MTXXXXXXXXXXXXXXXXTKSQKXXXXXXXXXXXXXXXXXXXXXXXXXXXFMNFGERKDP 785
                                S K                           FMNFGERKDP
Sbjct: 164  --------------------SLKPSGRGRGGKGSSAATIGGRGRGGGRGGFMNFGERKDP 203

Query: 786  PHKGEKEVPEGAPDCLANLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSKKTNYLLCD 965
            PHKGEKEVPEGAPDCLA LTFVISGTLDSLEREEAEDLIKRHGGR+TGSVSKKTNYLLCD
Sbjct: 204  PHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCD 263

Query: 966  EDIGGRKSSKAKELGTGFLTEDGLFDMIRAS 1058
            EDIGGRKSSKAKELGTGFLTEDGLFDMIRAS
Sbjct: 264  EDIGGRKSSKAKELGTGFLTEDGLFDMIRAS 294


>ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 947

 Score =  201 bits (510), Expect = 3e-49
 Identities = 97/101 (96%), Positives = 98/101 (97%)
 Frame = +3

Query: 756  FMNFGERKDPPHKGEKEVPEGAPDCLANLTFVISGTLDSLEREEAEDLIKRHGGRITGSV 935
            FMNFGERKDPPHKGEKEVPEGAPDCLA LTFVISGTLDSLEREEAEDLIKRHGGR+TGSV
Sbjct: 170  FMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 229

Query: 936  SKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRAS 1058
            SKKTNYLLCDEDIGGRKS KAKELGT FLTEDGLFDMIRAS
Sbjct: 230  SKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRAS 270



 Score = 77.0 bits (188), Expect = 7e-12
 Identities = 61/153 (39%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
 Frame = +3

Query: 120 SDIRKWFMKHNEKGNGNAATAK--AEKPSSLEKTSPASTQQENSGRGGQETSGRRKVSPY 293
           SDIRKWFMK ++KGN NAA++K  ++KP S EKT   +        GGQE+SGRR  S Y
Sbjct: 2   SDIRKWFMKTHDKGN-NAASSKPSSDKPQS-EKTVAFAV------AGGQESSGRRITSKY 53

Query: 294 FASDXXXXXXXXXXXXXXXXXXTPNRXXXXXXXXXXXXXXXFVMPSSKRKGSVAATPNKK 473
           F S+                     +                V+P++K+K     TP KK
Sbjct: 54  FNSN----KQKGKDEKEKQELPAKRKNAKDSEEIHEDDGDDSVLPTNKKK-LADTTPTKK 108

Query: 474 SKSGAGRGVSKMSVDLDESDEDNVN--VKAAKS 566
            KSG+GRG+ K S  L+ESDED+    V AAKS
Sbjct: 109 LKSGSGRGIPKKSAVLEESDEDDDKDAVSAAKS 141


>ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 1112

 Score =  198 bits (503), Expect = 2e-48
 Identities = 95/101 (94%), Positives = 97/101 (96%)
 Frame = +3

Query: 756  FMNFGERKDPPHKGEKEVPEGAPDCLANLTFVISGTLDSLEREEAEDLIKRHGGRITGSV 935
            FMNFGERKDPPHKGEKEVPEGAPDCLA LTFVISGTLDSLEREEAEDLIKRHGGR+TGSV
Sbjct: 337  FMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSV 396

Query: 936  SKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRAS 1058
            SKKTNYLLCDEDIGGRKS KAK+LGT FLTEDGLFDMIR S
Sbjct: 397  SKKTNYLLCDEDIGGRKSEKAKQLGTSFLTEDGLFDMIRGS 437



 Score = 81.6 bits (200), Expect = 3e-13
 Identities = 60/155 (38%), Positives = 80/155 (51%), Gaps = 4/155 (2%)
 Frame = +3

Query: 114 MSSDIRKWFMKHNEKGNGNAATAKAEKPSSLEKTSPASTQQENSGRGGQETSGRRKVSPY 293
           ++SDIRKWFMK ++KGN NAA++K   PS+  K S    Q E +  GGQE+SGRR  S Y
Sbjct: 161 VASDIRKWFMKTHDKGN-NAASSK---PSNQPKPSSDKPQSEKTVAGGQESSGRRITSKY 216

Query: 294 FASDXXXXXXXXXXXXXXXXXXT--PNRXXXXXXXXXXXXXXXFVMPSSKRKGSVAATPN 467
           F S+                      +                 V+P++K+K     TP 
Sbjct: 217 FNSNKQKGKDKKEMQELPAKRKNMKDSEEIPEPKKIHEDDGDDSVLPTNKKK-LADTTPT 275

Query: 468 KKSKSGAGRGVSKMSVDLDESDEDNVN--VKAAKS 566
           KK KSG+GRG+ + S  L+ESDED+    V AAKS
Sbjct: 276 KKLKSGSGRGLPQKSAVLEESDEDDDKDAVSAAKS 310


>ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
            gi|297319877|gb|EFH50299.1| AAA-type ATPase family
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 960

 Score =  195 bits (496), Expect = 1e-47
 Identities = 95/101 (94%), Positives = 96/101 (95%)
 Frame = +3

Query: 756  FMNFGERKDPPHKGEKEVPEGAPDCLANLTFVISGTLDSLEREEAEDLIKRHGGRITGSV 935
            FMNFGERKDPPHKGEKEVPEG PDCLA LTFVISGTLDSLEREEAEDLIKRHGGRITGSV
Sbjct: 186  FMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSV 245

Query: 936  SKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRAS 1058
            SKKT YLLCDEDIGGRKS KAKELGT FLTEDGLFDMIR+S
Sbjct: 246  SKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRSS 286