BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00002313
         (1508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...   332   2e-88
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici...   252   2e-64
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...   250   6e-64
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   245   3e-62
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...   243   7e-62

>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score =  332 bits (851), Expect = 2e-88
 Identities = 179/494 (36%), Positives = 269/494 (54%), Gaps = 6/494 (1%)
 Frame = -2

Query: 1468 RGIHWMSWDRLCTRKSEGGMGFRSVRDFNIALLGKQAWRLLQFPNKLVSRIFQARYYRSS 1289
            R I WMSW ++C +K +GG+GFR + DFN+ALL KQ WR L+ P+ LV+RIFQARY+R+S
Sbjct: 302  RSIRWMSWGKMCKQKKDGGLGFRKLXDFNLALLAKQGWRFLRNPDSLVTRIFQARYFRNS 361

Query: 1288 SFLEAQLGKNPSYIWRSVLAAQDMIKQGISCRIGNGDSLSISGVPWLPNDNDPYVHTRSE 1109
            SFL A+LG NPSY+WRS+LAAQ ++K+G    I +G  + + G  WLP+ ++  + T   
Sbjct: 362  SFLNAELGSNPSYMWRSILAAQGLLKRGCYWSIASGTKVQVWGDSWLPDSSNRLIITPPV 421

Query: 1108 AILNQ-RVSSLMVMGEKGWDIDLIVDIFDQRDADIILNIPL-NDQVHDNWYWRKDKMGTY 935
            A  +  +V  L+  G   W  D I D F  RDAD+IL+IPL      D   W  D  G Y
Sbjct: 422  AGFDGIKVDELITEGL--WREDFIRDKFMARDADLILSIPLPMSSREDQISWSFDARGEY 479

Query: 934  SVKGGYLLLQDMKQR----AQTADNSGFWRKIWNLKIPPKVKNFLWRASNNCLPTKDRLR 767
            + + GY  L+  +Q     A   D++  W ++W +  PPK+ NF WRA+ NCLPT+  L 
Sbjct: 480  TARSGYGALRCFRQSTALVASDVDSNFVWAQLWKVTAPPKILNFAWRAARNCLPTRFALT 539

Query: 766  SKHVQVDGWCPLCNEYQESQLHVIVECSFAIQCWHNAALKSITGNPITFSDWLLLVFEQR 587
             +HV     CP+C    E+ LH +VEC  A   W  + L  + GN  +F DWL  +F   
Sbjct: 540  IRHVDTPMCCPICRSELETTLHALVECVAARDVWDESGLAMLQGNFGSFVDWLATMFAYC 599

Query: 586  DNAEIQATTMISWMIWRNRNQVIWNQKSMDFASVVTSALSIFNQWKFVQDKSFDISMGFM 407
            D         + W +W  RN V+WN +      VV    ++   W F  +++   +   +
Sbjct: 600  DFVVFAKYLAVCWGLWWRRNDVVWNGRIWHSQQVVNGCFTMLESW-FHANETLATA---V 655

Query: 406  TQEDGMEQWHSPAANRVKINTDAAIFERPDRFSYAFVIRDHHGKLVEAKSTCQQGSVSPV 227
            T      +W  P    +KIN D A+F  PD+ +   V RDH G+ +   +        P 
Sbjct: 656  TVPSYSSKWQKPDYGWIKINVDGAVF--PDKGAIGAVFRDHQGRFMGGFAKPFPHQTLPK 713

Query: 226  IAEAMGIREALSWVKAKNMCNVDMETDSMELVQWTRSSFTSLSYLGRLVDECRHLLMALK 47
            + EA+G+RE LSW+  ++   + +ETD + +VQ  +      +  G ++ +C  +L  L 
Sbjct: 714  VVEALGVREVLSWIHERSRSRIVVETDCLRVVQAIQHKSCPNTSFGFIIVDCLDVLQHLV 773

Query: 46   DQHIRLNFVKRSAN 5
            D  +++ + +RSAN
Sbjct: 774  D--VQVVYARRSAN 785


>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
            gi|223538337|gb|EEF39944.1| nucleic acid binding protein,
            putative [Ricinus communis]
          Length = 483

 Score =  252 bits (643), Expect = 2e-64
 Identities = 149/457 (32%), Positives = 231/457 (50%), Gaps = 2/457 (0%)
 Frame = -2

Query: 1369 GKQAWRLLQFPNKLVSRIFQARYYRSSSFLEAQLGKNPSYIWRSVLAAQDMIKQGISCRI 1190
            G++AWRL++ P+ LV ++++ARYY +  FL + LG NPSYIW S+   +D+I +G+  +I
Sbjct: 14   GRRAWRLVENPDLLVGKLYKARYYPNGDFLSSLLGTNPSYIWASLQQVRDLICKGVQWKI 73

Query: 1189 GNGDSLSISGVPWLPNDNDPYVHTR-SEAILNQRVSSLMVMGEKGWDIDLIVDIFDQRDA 1013
            G G  +SI    WL + ++ ++ T   + +  Q V SL+  G   WD +++ D+F +RD 
Sbjct: 74   GKGTEVSIGLHEWLLDASNGFIETNLPDELRLQPVCSLLKPGTCDWDQEILNDLFSERDK 133

Query: 1012 DIILNIPLNDQVH-DNWYWRKDKMGTYSVKGGYLLLQDMKQRAQTADNSGFWRKIWNLKI 836
            ++I +I L+  V  D  +W KD  G +SVK  Y + Q          N   WR++W L I
Sbjct: 134  NLINSIVLSPTVGTDQLFWFKDPKGKFSVKDVYRV-QQPDFSVLYPSNVVVWRRLWKLNI 192

Query: 835  PPKVKNFLWRASNNCLPTKDRLRSKHVQVDGWCPLCNEYQESQLHVIVECSFAIQCWHNA 656
              K K F+WRA  N LP +  L  + V  D  CP C    E+ +H++V C    Q W   
Sbjct: 193  AAKCKVFMWRALTNRLPVRTNLVMRKVTEDSSCPCCVSQPETIMHILVLCDVTTQSWKYV 252

Query: 655  ALKSITGNPITFSDWLLLVFEQRDNAEIQATTMISWMIWRNRNQVIWNQKSMDFASVVTS 476
             L           +    VFE  D++ + +  ++ W +W N N V+WN K + + +V + 
Sbjct: 253  NLYQFLSQVSNLLEGARSVFEHFDDSIVASFVVLWWSLWTNMNDVVWNGKKLSWRAVASR 312

Query: 475  ALSIFNQWKFVQDKSFDISMGFMTQEDGMEQWHSPAANRVKINTDAAIFERPDRFSYAFV 296
            A S   QW   + K  D          G   W  PA  + K+N DA+      +   +FV
Sbjct: 313  ASSFLFQWGKAR-KLTDYHQLGRHFAGGDCLWQKPATGKYKLNVDASSSAERGKSGASFV 371

Query: 295  IRDHHGKLVEAKSTCQQGSVSPVIAEAMGIREALSWVKAKNMCNVDMETDSMELVQWTRS 116
            +RD+ G  +      +    +P +AEA  ++EALSW+ AK M  V +ETD +  ++    
Sbjct: 372  LRDNAGIWITGVLIIRPYIANPDVAEAWALKEALSWIHAKGMEEVQIETDCLRNIELLEE 431

Query: 115  SFTSLSYLGRLVDECRHLLMALKDQHIRLNFVKRSAN 5
                 SYL  L+ +C+ LL  L      L FV  SAN
Sbjct: 432  ELHPNSYLLCLLKDCQDLLRVL--NRCNLVFVYGSAN 466


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score =  250 bits (639), Expect = 6e-64
 Identities = 142/486 (29%), Positives = 237/486 (48%), Gaps = 8/486 (1%)
 Frame = -2

Query: 1438 LCTRKSEGGMGFRSVRDFNIALLGKQAWRLLQFPNKLVSRIFQARYYRSSSFLEAQLGKN 1259
            L   K EGG+GF+++R FN  +LGKQAW+ +  P+ +V+R+F+A+Y+    FL++++G N
Sbjct: 1246 LSIHKKEGGLGFKNLRAFNEGMLGKQAWKFMTEPHNIVTRLFKAKYFNKCDFLDSKIGHN 1305

Query: 1258 PSYIWRSVLAAQDMIKQGISCRIGNGDSLSISGVPWLPNDNDPYVHTRSEAILNQ----R 1091
            PSY+WR++  A+ ++ +G    IG+G  + +    WL    D  V  + E++  +     
Sbjct: 1306 PSYVWRNIWGAKRVVSEGYKWSIGSGTDICVWDQRWLV---DGGVLQKPESLPEEFKELT 1362

Query: 1090 VSSLMVMGEKGWDIDLIVDIFDQRDADIILNIPLNDQVHDNWYWRKDKMGTYSVKGGYLL 911
            V+ L +   + W++ L+ ++    D + ILN P+ +  H                    L
Sbjct: 1363 VADLFISQTRFWNVGLLRNLVSNEDTNRILNTPIFEPNH--------------------L 1402

Query: 910  LQDMKQRAQTADNSGFWRKIWNLKIPPKVKNFLWRASNNCLPTKDRLRSKHVQVDGWCPL 731
             Q +       D  G W  +WNLK+PPKVK FLWR+  N LPT+ RL+ + V     C L
Sbjct: 1403 SQHVDLSTHRCD--GNWVLLWNLKVPPKVKTFLWRSCRNALPTRVRLQDRGVNCTKTCAL 1460

Query: 730  CNEYQESQLHVIVECSFAIQCWHNAALKSITGNP----ITFSDWLLLVFEQRDNAEIQAT 563
            C    E  +H+   C+ + QCW    L S         ++F   +  + ++ D+++    
Sbjct: 1461 CENEDEDSMHLFFYCTKSRQCWQQLGLWSKVQQKAQLNLSFGVTMFEILQELDSSQRVIW 1520

Query: 562  TMISWMIWRNRNQVIWNQKSMDFASVVTSALSIFNQWKFVQDKSFDISMGFMTQEDGMEQ 383
              + W IW+ RN  IW  + M  A+V    L++   W+  QD                  
Sbjct: 1521 ACVMWSIWKQRNDCIWRNEVMTTAAVRDRGLNLLTGWQNAQD-----------------I 1563

Query: 382  WHSPAANRVKINTDAAIFERPDRFSYAFVIRDHHGKLVEAKSTCQQGSVSPVIAEAMGIR 203
            W  P     K N DAA F+  +R      IRD  G+LV+A+++     +     EA+G+ 
Sbjct: 1564 WRKPDEGHFKCNVDAAFFKESNRVGIGICIRDDSGRLVKARTSWSTLLLDVPEGEAIGLL 1623

Query: 202  EALSWVKAKNMCNVDMETDSMELVQWTRSSFTSLSYLGRLVDECRHLLMALKDQHIRLNF 23
             A+ W K +N+ N+  E DS  +V    ++   +S LG ++ ECR    +    + R+ F
Sbjct: 1624 YAIRWAKEQNLNNITFELDSKRVVYSFHNTRNDVSDLGAIIRECRTTFSSF-FTNSRVEF 1682

Query: 22   VKRSAN 5
            ++R AN
Sbjct: 1683 IRRQAN 1688


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  245 bits (625), Expect = 3e-62
 Identities = 160/510 (31%), Positives = 264/510 (51%), Gaps = 13/510 (2%)
 Frame = -2

Query: 1492 FRSDGKKERGIHWMSWDRLCTRKSEGGMGFRSVRDFNIALLGKQAWRLLQFPNKLVSRIF 1313
            F    ++ER + W++W++L   K EGG+G R+   FN ALL KQAWR+L  P+ L++R+ 
Sbjct: 835  FWGQKEEERRVAWVAWEKLFLPKKEGGLGIRNFDVFNRALLAKQAWRILTKPDSLMARVI 894

Query: 1312 QARYYRSSSFLEAQLGKNPSYIWRSVLAAQDMIKQGISCRIGNGDSLSISGVPWLPNDND 1133
            + +Y+  S+FLEA++  N S+  +S+L+A+ +I++G+   IG+G   +I G PW+P+  +
Sbjct: 895  KGKYFPRSNFLEARVSPNMSFTCKSILSARAVIQKGMCRVIGDGRDTTIWGDPWVPS-LE 953

Query: 1132 PYVHTRSEAILN----QRVSSLMVMGEKGWDIDLIVDIFDQRDADIILNIPLNDQVH-DN 968
             Y    +E +      Q+V  L  +    W+++L+  +F   ++  I  IP+  Q   D 
Sbjct: 954  RYSIAATEGVSEDDGPQKVCEL--ISNDRWNVELLNTLFQPWESTAIQRIPVALQKKPDQ 1011

Query: 967  WYWRKDKMGTYSVKGGYL--LLQDMKQRAQTA--DNSGFWRKIWNLKIPPKVKNFLWRAS 800
            W W   K G ++V+  Y   LL+D K    T+   N   W+KIW  KIPPKVK F W+A 
Sbjct: 1012 WMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKLWQKIWKAKIPPKVKLFSWKAI 1071

Query: 799  NNCLPTKDRLRSKHVQVDGWCPLCNEYQESQLHVIVECSFAIQCWHNAALKSITGN--PI 626
            +N L     +R + + +DG CP C E +E+  H+I  C  + + W+ + L+  TGN    
Sbjct: 1072 HNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAG 1131

Query: 625  TFSDWLLLVFEQRDNAEIQAT-TMISWMIWRNRNQVIWNQKSMDFASVVTSALSIFNQWK 449
            +F  W+  + +   + E  A   MI W IW  RN+ ++ +K + F  VV  A  +    +
Sbjct: 1132 SFRIWVESLLDTHKDTEWWALFWMICWNIWLGRNKWVFEKKKLAFQEVVERA--VRGVME 1189

Query: 448  FVQDKSFDISMGFM-TQEDGMEQWHSPAANRVKINTDAAIFERPDRFSYAFVIRDHHGKL 272
            F ++ +    +  + T E+G   W  P    VK+N DAA+F+         V+RD  G +
Sbjct: 1190 FEEECAHTSPVETLNTHENG---WSVPPVGMVKLNVDAAVFKHVG-IGMGGVVRDAEGDV 1245

Query: 271  VEAKSTCQQGSVSPVIAEAMGIREALSWVKAKNMCNVDMETDSMELVQWTRSSFTSLSYL 92
            + A          P +AEA  +R  L         N+ +E D  +L    R   + ++  
Sbjct: 1246 LLATCCGGWAMEDPAMAEACSLRYGLKVAYEAGFRNLVVEMDCKKLFLQLRGKASDVTPF 1305

Query: 91   GRLVDECRHLLMALKDQHIRLNFVKRSANR 2
            GR+VD+   L +A K  ++    VKR  N+
Sbjct: 1306 GRVVDDI--LYLASKCSNVVFEHVKRHCNK 1333


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score =  243 bits (621), Expect = 7e-62
 Identities = 150/488 (30%), Positives = 245/488 (50%), Gaps = 18/488 (3%)
 Frame = -2

Query: 1468 RGIHWMSWDRLCTRKSEGGMGFRSVRDFNIALLGKQAWRLLQFPNKLVSRIFQARYYRSS 1289
            +GIHW  W  LC  K +GG+GFR +  FN ALLGKQ WRL+ +P+ LV+R+ +A+Y+   
Sbjct: 1121 KGIHWRRWSDLCFSKKDGGLGFRDLSLFNQALLGKQGWRLMMYPDSLVARMLKAKYFPWD 1180

Query: 1288 SFLEAQLGKNPSYIWRSVLAAQDMIKQGISCRIGNGDSLSISGVPWLPNDNDPYVHTRSE 1109
             F+EA+LG +PSY+WRS L  ++++++G+  RIG+G  + +   PW+P         R  
Sbjct: 1181 DFMEAELGSSPSYLWRSFLWGRELLRKGVRWRIGDGKEVRVFIDPWVPGLPSFRPILRQG 1240

Query: 1108 AILNQRVSSLMVMGEKGWDIDLIVDIFDQRDADIILNIPLN-DQVHDNWYWRKDKMGTYS 932
            A L  RVS L+     GW+++ +   F   + + I +I +   +  D + W   K G Y+
Sbjct: 1241 APLFLRVSDLL-HNNGGWNMEALNYWFTDDECEAISSITVGATRRPDVYMWNYCKNGRYT 1299

Query: 931  VKGGYLLLQDMKQRAQTADN-----SGFWRKIWNLKIPPKVKNFLWRASNNCLPTKDRLR 767
            VK GY L    ++  + A N       FW+ +W LK+PPK+ +FLWR S   +P  + L 
Sbjct: 1300 VKSGYWLA--CEENREEAINIVLAPRNFWKHLWKLKLPPKINHFLWRCSMGFIPCMEVLL 1357

Query: 766  SKHVQVDGWCPLCNEYQESQLHVIVECSFAIQCWHNAAL--KSITGNPITFSDWLLLVFE 593
             KH+     C  C + +ES +H    CS  +  +  A    K  +G   +F   L   F 
Sbjct: 1358 WKHIAHSASCFRCQQGRESPVHATWGCSCCVAVFERAGFYSKLSSGQFPSFIHLLHHAFS 1417

Query: 592  QRDNAEIQATTMISWMIWRNRNQVIWNQKSMDFASVVTSALSIFNQWKFVQDKSFDISMG 413
              D  E+Q   ++ W+ W  RN            +VV S +   N  KF+  K F  ++G
Sbjct: 1418 TLDKEELQLFAVLLWLNWHERNNCYHK------GAVVPSDIIYENGVKFL--KCFKEALG 1469

Query: 412  FMTQED----------GMEQWHSPAANRVKINTDAAIFERPDRFSYAFVIRDHHGKLVEA 263
                 +           + +W +P++ ++K+N D A   +   F    +IRD  G L+ A
Sbjct: 1470 CRAGVEVKAVEEVVPGSLRRWQAPSSGQLKVNCDGAANFKDRCFGGGTIIRDEFGSLIVA 1529

Query: 262  KSTCQQGSVSPVIAEAMGIREALSWVKAKNMCNVDMETDSMELVQWTRSSFTSLSYLGRL 83
                 Q  VS ++AE + I+  L  V  + + N+ +E+D +E +    S    L+  G L
Sbjct: 1530 GGKNFQHPVSSLVAELLAIKVGLDLVVERRLRNIMVESDCLEAIHLLNSKERCLAPEGGL 1589

Query: 82   VDECRHLL 59
            V++ ++ +
Sbjct: 1590 VEDIQNTM 1597