BLASTX nr result
ID: Bupleurum21_contig00002166
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00002166
(1094 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002298064.1| predicted protein [Populus trichocarpa] gi|2... 142 1e-56
ref|XP_002304468.1| predicted protein [Populus trichocarpa] gi|2... 142 2e-56
ref|XP_002277301.1| PREDICTED: elongation factor Tu, chloroplast... 138 2e-55
sp|Q43364.1|EFTUB_NICSY RecName: Full=Elongation factor TuB, chl... 142 4e-55
dbj|BAA01975.1| chloroplast elongation factor TuB (EF-TuB) [Nico... 142 4e-55
>ref|XP_002298064.1| predicted protein [Populus trichocarpa] gi|222845322|gb|EEE82869.1|
predicted protein [Populus trichocarpa]
Length = 483
Score = 142 bits (358), Expect(2) = 1e-56
Identities = 71/98 (72%), Positives = 75/98 (76%)
Frame = +3
Query: 3 DGPMPQTKEHILLAKQVGVPNMVVFLNKQXXXXXXXXXXXXXXXXXXXXSKYEFPGDEIP 182
DGPMPQTKEHILLAKQVGVPNMVVFLNKQ S YEFPGD+IP
Sbjct: 184 DGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIP 243
Query: 183 IVAGSALLALEALMENPAIKRGENEWVDKIYNLMDKVD 296
I++GSALLALEALMENPAIKRGEN+WVDKIY LMD VD
Sbjct: 244 IISGSALLALEALMENPAIKRGENQWVDKIYELMDNVD 281
Score = 105 bits (261), Expect(2) = 1e-56
Identities = 51/57 (89%), Positives = 56/57 (98%)
Frame = +2
Query: 344 IKTGDTVDIVGLKDTRTTTVTGVEMFQKLLDEALAGDNVGLLLRGIQKADIQRGMVL 514
I+TGDTVDIVGL++TR TTVTGVEMFQK+LDEALAGDNVGLLLRG+QKADIQRGMVL
Sbjct: 321 IRTGDTVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVL 377
Score = 132 bits (332), Expect = 2e-28
Identities = 63/74 (85%), Positives = 69/74 (93%)
Frame = +1
Query: 646 GYRPQFYMRTTDVTGKVTIIKNENDEESEMVMPGDRVKMVVELIVPVACEQGMRFAIREG 825
GYRPQFYMRTTDVTG+V I N+ DEES+MVMPGDRVKM+VELI+PVACEQGMRFAIREG
Sbjct: 410 GYRPQFYMRTTDVTGRVATIMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREG 469
Query: 826 GRTVGAGVINAIIE 867
G+TVGAGVI AIIE
Sbjct: 470 GKTVGAGVIQAIIE 483
>ref|XP_002304468.1| predicted protein [Populus trichocarpa] gi|222841900|gb|EEE79447.1|
predicted protein [Populus trichocarpa]
Length = 425
Score = 142 bits (358), Expect(2) = 2e-56
Identities = 71/98 (72%), Positives = 75/98 (76%)
Frame = +3
Query: 3 DGPMPQTKEHILLAKQVGVPNMVVFLNKQXXXXXXXXXXXXXXXXXXXXSKYEFPGDEIP 182
DGPMPQTKEHILLAKQVGVPNMVVFLNKQ S YEFPGD+IP
Sbjct: 126 DGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIP 185
Query: 183 IVAGSALLALEALMENPAIKRGENEWVDKIYNLMDKVD 296
I++GSALLALEALMENPAIKRGEN+WVDKIY LMD VD
Sbjct: 186 IISGSALLALEALMENPAIKRGENQWVDKIYELMDNVD 223
Score = 104 bits (259), Expect(2) = 2e-56
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = +2
Query: 344 IKTGDTVDIVGLKDTRTTTVTGVEMFQKLLDEALAGDNVGLLLRGIQKADIQRGMVL 514
IKTGDTVDIVGL++TR TVTGVEMFQK+LDEALAGDNVGLLLRG+QKADIQRGMVL
Sbjct: 263 IKTGDTVDIVGLRETRNVTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVL 319
Score = 131 bits (330), Expect = 3e-28
Identities = 63/74 (85%), Positives = 69/74 (93%)
Frame = +1
Query: 646 GYRPQFYMRTTDVTGKVTIIKNENDEESEMVMPGDRVKMVVELIVPVACEQGMRFAIREG 825
GYRPQFYMRTTDVTG+V I N+ DEES+MVMPGDRVKMVVELI+PVACEQGMRFAIREG
Sbjct: 352 GYRPQFYMRTTDVTGRVATIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREG 411
Query: 826 GRTVGAGVINAIIE 867
G+TVGAGVI +IIE
Sbjct: 412 GKTVGAGVIQSIIE 425
>ref|XP_002277301.1| PREDICTED: elongation factor Tu, chloroplastic-like [Vitis
vinifera]
Length = 486
Score = 138 bits (348), Expect(2) = 2e-55
Identities = 68/98 (69%), Positives = 74/98 (75%)
Frame = +3
Query: 3 DGPMPQTKEHILLAKQVGVPNMVVFLNKQXXXXXXXXXXXXXXXXXXXXSKYEFPGDEIP 182
DGPMPQTKEHILLAKQVGVPNMVVFLNKQ S YEFPGD++P
Sbjct: 187 DGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 246
Query: 183 IVAGSALLALEALMENPAIKRGENEWVDKIYNLMDKVD 296
I++GSALLALEALM NP+IKRGEN+WVDKIY LMD VD
Sbjct: 247 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVD 284
Score = 105 bits (261), Expect(2) = 2e-55
Identities = 51/57 (89%), Positives = 56/57 (98%)
Frame = +2
Query: 344 IKTGDTVDIVGLKDTRTTTVTGVEMFQKLLDEALAGDNVGLLLRGIQKADIQRGMVL 514
IK G+TVDIVGLKDTR+TTVTGVEMFQK+LDEALAGDNVG+LLRG+QKADIQRGMVL
Sbjct: 324 IKVGETVDIVGLKDTRSTTVTGVEMFQKILDEALAGDNVGILLRGVQKADIQRGMVL 380
Score = 134 bits (337), Expect = 4e-29
Identities = 65/74 (87%), Positives = 70/74 (94%)
Frame = +1
Query: 646 GYRPQFYMRTTDVTGKVTIIKNENDEESEMVMPGDRVKMVVELIVPVACEQGMRFAIREG 825
GYRPQFYMRTTDVTGKVT I N+ DEES+MVMPGDRVKMVVELI+PVACEQGMRFAIREG
Sbjct: 413 GYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREG 472
Query: 826 GRTVGAGVINAIIE 867
G+TVGAGVI +IIE
Sbjct: 473 GKTVGAGVIQSIIE 486
>sp|Q43364.1|EFTUB_NICSY RecName: Full=Elongation factor TuB, chloroplastic; Short=EF-TuB;
Flags: Precursor gi|459241|dbj|BAA02028.1| chloroplast
elongation factor TuB(EF-TuB) [Nicotiana sylvestris]
Length = 485
Score = 142 bits (357), Expect(2) = 4e-55
Identities = 71/99 (71%), Positives = 75/99 (75%)
Frame = +3
Query: 3 DGPMPQTKEHILLAKQVGVPNMVVFLNKQXXXXXXXXXXXXXXXXXXXXSKYEFPGDEIP 182
DGPMPQTKEHILLAKQVGVPNMVVFLNKQ S YEFPGDEIP
Sbjct: 186 DGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDEIP 245
Query: 183 IVAGSALLALEALMENPAIKRGENEWVDKIYNLMDKVDE 299
I++GSALLALEALM NP+IKRGEN+WVDKIY LMD VDE
Sbjct: 246 IISGSALLALEALMANPSIKRGENQWVDKIYQLMDNVDE 284
Score = 100 bits (249), Expect(2) = 4e-55
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = +2
Query: 344 IKTGDTVDIVGLKDTRTTTVTGVEMFQKLLDEALAGDNVGLLLRGIQKADIQRGMVL 514
+K G+ VDIVGLKDTR TTVTGVEMFQK+LDEA+AGDNVGLLLRGIQK DIQRGMVL
Sbjct: 323 VKVGEIVDIVGLKDTRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVL 379
Score = 128 bits (321), Expect = 3e-27
Identities = 61/74 (82%), Positives = 68/74 (91%)
Frame = +1
Query: 646 GYRPQFYMRTTDVTGKVTIIKNENDEESEMVMPGDRVKMVVELIVPVACEQGMRFAIREG 825
GYRPQFYMRTTDVTGKVT+I ++ EES+MVMPGDRV MVVELI+PVACEQGMRFAIREG
Sbjct: 412 GYRPQFYMRTTDVTGKVTVIMSDKGEESKMVMPGDRVNMVVELIMPVACEQGMRFAIREG 471
Query: 826 GRTVGAGVINAIIE 867
G+TVGAGVI I+E
Sbjct: 472 GKTVGAGVIQKILE 485
>dbj|BAA01975.1| chloroplast elongation factor TuB (EF-TuB) [Nicotiana sylvestris]
Length = 425
Score = 142 bits (357), Expect(2) = 4e-55
Identities = 71/99 (71%), Positives = 75/99 (75%)
Frame = +3
Query: 3 DGPMPQTKEHILLAKQVGVPNMVVFLNKQXXXXXXXXXXXXXXXXXXXXSKYEFPGDEIP 182
DGPMPQTKEHILLAKQVGVPNMVVFLNKQ S YEFPGDEIP
Sbjct: 126 DGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDEIP 185
Query: 183 IVAGSALLALEALMENPAIKRGENEWVDKIYNLMDKVDE 299
I++GSALLALEALM NP+IKRGEN+WVDKIY LMD VDE
Sbjct: 186 IISGSALLALEALMANPSIKRGENQWVDKIYQLMDNVDE 224
Score = 100 bits (249), Expect(2) = 4e-55
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = +2
Query: 344 IKTGDTVDIVGLKDTRTTTVTGVEMFQKLLDEALAGDNVGLLLRGIQKADIQRGMVL 514
+K G+ VDIVGLKDTR TTVTGVEMFQK+LDEA+AGDNVGLLLRGIQK DIQRGMVL
Sbjct: 263 VKVGEIVDIVGLKDTRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKIDIQRGMVL 319
Score = 128 bits (321), Expect = 3e-27
Identities = 61/74 (82%), Positives = 68/74 (91%)
Frame = +1
Query: 646 GYRPQFYMRTTDVTGKVTIIKNENDEESEMVMPGDRVKMVVELIVPVACEQGMRFAIREG 825
GYRPQFYMRTTDVTGKVT+I ++ EES+MVMPGDRV MVVELI+PVACEQGMRFAIREG
Sbjct: 352 GYRPQFYMRTTDVTGKVTVIMSDKGEESKMVMPGDRVNMVVELIMPVACEQGMRFAIREG 411
Query: 826 GRTVGAGVINAIIE 867
G+TVGAGVI I+E
Sbjct: 412 GKTVGAGVIQKILE 425