BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00002018
         (606 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containi...   133   2e-29
ref|XP_004171307.1| PREDICTED: pentatricopeptide repeat-containi...   121   1e-25
ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containi...   121   1e-25
ref|XP_002515794.1| pentatricopeptide repeat-containing protein,...   120   1e-25
ref|XP_002310993.1| predicted protein [Populus trichocarpa] gi|2...   115   5e-24

>ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score =  133 bits (335), Expect = 2e-29
 Identities = 69/129 (53%), Positives = 87/129 (67%), Gaps = 5/129 (3%)
 Frame = +3

Query: 234 NTVNHLWLSSKLAXXXXXXXEQKSQPKVVDCDEEVK-----IAMRKEVEIEELKETGKIF 398
           N  N LWLSS+L+        +  Q  + D +  V      +      EIE  ++ GKIF
Sbjct: 91  NLTNKLWLSSQLSPPPPPPPTRPPQETIDDNEVTVSSNLDNLCSDGSPEIE-FRQEGKIF 149

Query: 399 VANLPAWIKKNEFAEYFRQFGPIKNVILIKGYNDSERNLGFGFVIYGGENAASCAMKAVE 578
           V NLP W+KKNE +E+FRQFGPI+NVILIKG+ND++RN GFGFVIYGG  A+  AM+AVE
Sbjct: 150 VGNLPNWVKKNEVSEFFRQFGPIENVILIKGHNDNQRNAGFGFVIYGGPMASGSAMRAVE 209

Query: 579 FDGVDFHGR 605
           FDGV+FHGR
Sbjct: 210 FDGVEFHGR 218


>ref|XP_004171307.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 398

 Score =  121 bits (303), Expect = 1e-25
 Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 4/123 (3%)
 Frame = +3

Query: 249 LWLSSKLAXXXXXXXE----QKSQPKVVDCDEEVKIAMRKEVEIEELKETGKIFVANLPA 416
           LWLSSKL+       E     +++ + ++ D       R+EV+    ++ GKIFV NLP 
Sbjct: 121 LWLSSKLSPPPPPISELLEEDRNEIEEIESDNSSSKG-RREVQF---RQEGKIFVGNLPN 176

Query: 417 WIKKNEFAEYFRQFGPIKNVILIKGYNDSERNLGFGFVIYGGENAASCAMKAVEFDGVDF 596
           WIKK+E  E+FRQFGP+KNVILIKG+N  ERN G+GF+IY G  A   A+KAVEFDGV+F
Sbjct: 177 WIKKHEVQEFFRQFGPVKNVILIKGHNAVERNAGYGFIIYDGLTADKSAIKAVEFDGVEF 236

Query: 597 HGR 605
           HGR
Sbjct: 237 HGR 239


>ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score =  121 bits (303), Expect = 1e-25
 Identities = 64/123 (52%), Positives = 83/123 (67%), Gaps = 4/123 (3%)
 Frame = +3

Query: 249 LWLSSKLAXXXXXXXE----QKSQPKVVDCDEEVKIAMRKEVEIEELKETGKIFVANLPA 416
           LWLSSKL+       E     +++ + ++ D       R+EV+    ++ GKIFV NLP 
Sbjct: 121 LWLSSKLSPPPPPISELLEEDRNEIEEIESDNSSSKG-RREVQF---RQEGKIFVGNLPN 176

Query: 417 WIKKNEFAEYFRQFGPIKNVILIKGYNDSERNLGFGFVIYGGENAASCAMKAVEFDGVDF 596
           WIKK+E  E+FRQFGP+KNVILIKG+N  ERN G+GF+IY G  A   A+KAVEFDGV+F
Sbjct: 177 WIKKHEVQEFFRQFGPVKNVILIKGHNAVERNAGYGFIIYDGLTADKSAIKAVEFDGVEF 236

Query: 597 HGR 605
           HGR
Sbjct: 237 HGR 239


>ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545122|gb|EEF46633.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 924

 Score =  120 bits (302), Expect = 1e-25
 Identities = 62/119 (52%), Positives = 74/119 (62%)
 Frame = +3

Query: 249 LWLSSKLAXXXXXXXEQKSQPKVVDCDEEVKIAMRKEVEIEELKETGKIFVANLPAWIKK 428
           L LS KL             P V     +V      E    E ++ GKIF+ NLP WIKK
Sbjct: 116 LRLSGKLFPLPPPPLPLPPPPPVPRAKTQVDKHQENESHKPEFRQEGKIFIGNLPNWIKK 175

Query: 429 NEFAEYFRQFGPIKNVILIKGYNDSERNLGFGFVIYGGENAASCAMKAVEFDGVDFHGR 605
           +E +E+FRQFGPIK VILIKGYN++ERN GFGFVIY  + A   A KAVEFDG++FHGR
Sbjct: 176 HEISEFFRQFGPIKKVILIKGYNETERNAGFGFVIYDDKTAEKSATKAVEFDGMEFHGR 234


>ref|XP_002310993.1| predicted protein [Populus trichocarpa] gi|222850813|gb|EEE88360.1|
           predicted protein [Populus trichocarpa]
          Length = 877

 Score =  115 bits (289), Expect = 5e-24
 Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 4/95 (4%)
 Frame = +3

Query: 333 EVKIAMRKEVEIEELK----ETGKIFVANLPAWIKKNEFAEYFRQFGPIKNVILIKGYND 500
           E +    ++VE E  K    + GKIF+ NLP WIKK+E +E+FRQFGPIKNV+LI G+N+
Sbjct: 136 EAETQETRKVENEAPKTDFCQKGKIFIGNLPNWIKKHELSEFFRQFGPIKNVVLINGHNE 195

Query: 501 SERNLGFGFVIYGGENAASCAMKAVEFDGVDFHGR 605
           +ERN GFGF+IY G  A   AMKA EFDG++FHGR
Sbjct: 196 TERNAGFGFIIYDGPTAEKSAMKAEEFDGMEFHGR 230