BLASTX nr result
ID: Bupleurum21_contig00000534
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00000534
(375 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003558997.1| PREDICTED: upstream activation factor subuni... 133 1e-29
ref|XP_002883161.1| SWIB complex BAF60b domain-containing protei... 133 2e-29
gb|ABF99032.1| SWIB complex BAF60b domain-containing protein, pu... 129 3e-28
ref|NP_188538.1| SWIB complex BAF60b domain-containing protein [... 127 7e-28
dbj|BAB01706.1| unnamed protein product [Arabidopsis thaliana] 127 7e-28
>ref|XP_003558997.1| PREDICTED: upstream activation factor subunit spp27-like isoform 1
[Brachypodium distachyon]
Length = 334
Score = 133 bits (335), Expect = 1e-29
Identities = 61/110 (55%), Positives = 82/110 (74%)
Frame = +1
Query: 13 EDDSSNGSAQEEDNRKEILEXXXXXXXXRSGGFTKPCALSPELEEIVGEAELARTEVVKR 192
++D +G + RK L+ + GGFTK C++SP L+E VG +ELARTEVVK+
Sbjct: 106 DEDEEDGDSSGGHKRKRRLDKGNSDGKRKGGGFTKLCSISPTLQEFVGASELARTEVVKK 165
Query: 193 IWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKHIWPI 342
+W YIRENNLQ+P+++RKILCDE L LF+V SIDMF+M++ALTKHIWP+
Sbjct: 166 LWAYIRENNLQDPSNKRKILCDETLKKLFKVNSIDMFQMNKALTKHIWPL 215
Score = 80.5 bits (197), Expect = 1e-13
Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Frame = +1
Query: 106 GFTKPCALSPELEEIVGEAE--LARTEVVKRIWVYIRENNLQNPNDRRKILCDEKLYSLF 279
G P LS +L +G E L+R++VVK +W YI+ENNLQ+P+DRRKI+CDEKL +LF
Sbjct: 253 GLNAPLQLSDDLANFIGTGESMLSRSDVVKIMWDYIKENNLQDPSDRRKIICDEKLKNLF 312
Query: 280 QVKSIDMFKMSQALTKH 330
QV S F +S+ L+ H
Sbjct: 313 QVDSFTGFTVSKLLSPH 329
>ref|XP_002883161.1| SWIB complex BAF60b domain-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297329001|gb|EFH59420.1| SWIB complex
BAF60b domain-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 463
Score = 133 bits (334), Expect = 2e-29
Identities = 64/113 (56%), Positives = 86/113 (76%)
Frame = +1
Query: 10 GEDDSSNGSAQEEDNRKEILEXXXXXXXXRSGGFTKPCALSPELEEIVGEAELARTEVVK 189
GED +GS EE+ + ++ R GGFTK LSP+LE++VG ++L RTEVVK
Sbjct: 88 GEDLDGDGSESEEEKEERPVKAKK-----RGGGFTKVSQLSPQLEKVVGASQLGRTEVVK 142
Query: 190 RIWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKHIWPIED 348
++W YIREN+LQ+P DRRKI+CDE L+SLF+VK+I+MF+MS+ALTKHIWP+ D
Sbjct: 143 KMWAYIRENDLQDPKDRRKIVCDELLHSLFRVKTINMFQMSKALTKHIWPLGD 195
Score = 121 bits (304), Expect = 5e-26
Identities = 59/116 (50%), Positives = 77/116 (66%)
Frame = +1
Query: 1 NVKGEDDSSNGSAQEEDNRKEILEXXXXXXXXRSGGFTKPCALSPELEEIVGEAELARTE 180
N + E + + + RK+ + GGF K C+LSPEL+ G ELARTE
Sbjct: 228 NKEEESEEEEVRSLRKRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAFTGVTELARTE 287
Query: 181 VVKRIWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKHIWPIED 348
VVK +W YI+ENNLQ+PND+R I+CDE L SLF +SI+MF+MS+ LTKHIWP+ED
Sbjct: 288 VVKMLWKYIKENNLQDPNDKRIIICDESLRSLFPFESINMFQMSKLLTKHIWPLED 343
Score = 72.0 bits (175), Expect = 5e-11
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Frame = +1
Query: 4 VKGEDDSSNGSAQEEDNRKEILEXXXXXXXXRSGGFTKPCALSPELEEIVG---EAELAR 174
++ + DS + +++ +KE+L P LS L + +G E+ L+R
Sbjct: 361 MESDGDSEEPNEKDKKQKKEVLA---------------PLPLSVALVKFLGNNGESSLSR 405
Query: 175 TEVVKRIWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKH 330
+V KR+W YI++N+LQ+P+D+R+I+CDEKL LF+V S + S LT H
Sbjct: 406 ADVGKRLWEYIKQNDLQDPSDKRRIICDEKLKELFEVDSFEDTSFSTLLTNH 457
>gb|ABF99032.1| SWIB complex BAF60b domain-containing protein, putative, expressed
[Oryza sativa Japonica Group]
gi|218193805|gb|EEC76232.1| hypothetical protein
OsI_13647 [Oryza sativa Indica Group]
gi|222625850|gb|EEE59982.1| hypothetical protein
OsJ_12695 [Oryza sativa Japonica Group]
Length = 334
Score = 129 bits (323), Expect = 3e-28
Identities = 60/114 (52%), Positives = 83/114 (72%), Gaps = 4/114 (3%)
Frame = +1
Query: 13 EDDSSNGSAQEEDN----RKEILEXXXXXXXXRSGGFTKPCALSPELEEIVGEAELARTE 180
E++ +EED+ +K + + GGFTK C++SP L+E VG +ELARTE
Sbjct: 99 EEEEEEEEEEEEDSSGSRKKRRSDGANTDGKRKGGGFTKLCSISPTLQEFVGASELARTE 158
Query: 181 VVKRIWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKHIWPI 342
VVK++W YIRENNLQ+P+++RKILCDE+L +F V SIDMF+M++ALTKHIWP+
Sbjct: 159 VVKKLWAYIRENNLQDPSNKRKILCDERLKKIFNVNSIDMFQMNKALTKHIWPL 212
Score = 81.3 bits (199), Expect = 8e-14
Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Frame = +1
Query: 106 GFTKPCALSPELEEIVGEAE--LARTEVVKRIWVYIRENNLQNPNDRRKILCDEKLYSLF 279
GF P LS +L + +G E L+R++VVKR+W YI+EN LQ+P+DRRKI+CDEKL L
Sbjct: 253 GFLVPLQLSDDLVKFIGTGESMLSRSDVVKRMWDYIKENKLQDPSDRRKIICDEKLKDLL 312
Query: 280 QVKSIDMFKMSQALTKH 330
QV+S + F +S+ L H
Sbjct: 313 QVESFNGFTVSKLLAPH 329
>ref|NP_188538.1| SWIB complex BAF60b domain-containing protein [Arabidopsis
thaliana] gi|332642670|gb|AEE76191.1| SWIB complex
BAF60b domain-containing protein [Arabidopsis thaliana]
Length = 462
Score = 127 bits (320), Expect = 7e-28
Identities = 61/113 (53%), Positives = 84/113 (74%)
Frame = +1
Query: 10 GEDDSSNGSAQEEDNRKEILEXXXXXXXXRSGGFTKPCALSPELEEIVGEAELARTEVVK 189
GED +GS EE+ + ++ R GG TK LSP+LE++VG ++L RTEVVK
Sbjct: 88 GEDLDGDGSGSEEEKEERPVKAKK-----RGGGITKVSQLSPQLEKVVGASQLGRTEVVK 142
Query: 190 RIWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKHIWPIED 348
++W YIRE +LQ+P DRRKI+CDE L+SLF+VK+I+MF+M++ALTKHIWP+ D
Sbjct: 143 KMWAYIREKDLQDPKDRRKIVCDELLHSLFRVKTINMFQMNKALTKHIWPLGD 195
Score = 121 bits (304), Expect = 5e-26
Identities = 58/116 (50%), Positives = 77/116 (66%)
Frame = +1
Query: 1 NVKGEDDSSNGSAQEEDNRKEILEXXXXXXXXRSGGFTKPCALSPELEEIVGEAELARTE 180
N + E + + + RK+ + GGF K C+LSPEL+ G ELARTE
Sbjct: 228 NKEEESEEQEVRSLRKRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAFTGVTELARTE 287
Query: 181 VVKRIWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKHIWPIED 348
VVK +W YI+ENNLQ+PND+R I+CDE SLF V+SI+MF+M++ LTKHIWP+ED
Sbjct: 288 VVKLLWKYIKENNLQDPNDKRSIICDESFRSLFPVESINMFQMNKQLTKHIWPLED 343
Score = 75.1 bits (183), Expect = 6e-12
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
Frame = +1
Query: 4 VKGEDDSSNGSAQEEDNRKEILEXXXXXXXXRSGGFTKPCALSPELEEIVGEAE--LART 177
++ + DS + +++ +KE+L P LS L + +G+ E L+R
Sbjct: 361 MESDGDSEEPNEKDKKQKKEVLA---------------PLPLSDALVKFLGDGENSLSRA 405
Query: 178 EVVKRIWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKH 330
+VVKR+W YI N+LQ+P+D+R+++CDEKL LF+V S + +S+ LT H
Sbjct: 406 DVVKRLWEYINHNDLQDPSDKRRVICDEKLKELFEVDSFEDTSVSKLLTNH 456
>dbj|BAB01706.1| unnamed protein product [Arabidopsis thaliana]
Length = 452
Score = 127 bits (320), Expect = 7e-28
Identities = 61/113 (53%), Positives = 84/113 (74%)
Frame = +1
Query: 10 GEDDSSNGSAQEEDNRKEILEXXXXXXXXRSGGFTKPCALSPELEEIVGEAELARTEVVK 189
GED +GS EE+ + ++ R GG TK LSP+LE++VG ++L RTEVVK
Sbjct: 74 GEDLDGDGSGSEEEKEERPVKAKK-----RGGGITKVSQLSPQLEKVVGASQLGRTEVVK 128
Query: 190 RIWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKHIWPIED 348
++W YIRE +LQ+P DRRKI+CDE L+SLF+VK+I+MF+M++ALTKHIWP+ D
Sbjct: 129 KMWAYIREKDLQDPKDRRKIVCDELLHSLFRVKTINMFQMNKALTKHIWPLGD 181
Score = 120 bits (302), Expect = 9e-26
Identities = 54/82 (65%), Positives = 67/82 (81%)
Frame = +1
Query: 103 GGFTKPCALSPELEEIVGEAELARTEVVKRIWVYIRENNLQNPNDRRKILCDEKLYSLFQ 282
GGF K C+LSPEL+ G ELARTEVVK +W YI+ENNLQ+PND+R I+CDE SLF
Sbjct: 250 GGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICDESFRSLFP 309
Query: 283 VKSIDMFKMSQALTKHIWPIED 348
V+SI+MF+M++ LTKHIWP+ED
Sbjct: 310 VESINMFQMNKQLTKHIWPLED 331
Score = 76.6 bits (187), Expect = 2e-12
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Frame = +1
Query: 10 GEDDSSNGSAQEEDNRKEILEXXXXXXXXRSGGFTKPCALSPELEEIVGEAE--LARTEV 183
G+ DS + +++ +KE+L P LS L + +G+ E L+R +V
Sbjct: 353 GDTDSEEPNEKDKKQKKEVLA---------------PLPLSDALVKFLGDGENSLSRADV 397
Query: 184 VKRIWVYIRENNLQNPNDRRKILCDEKLYSLFQVKSIDMFKMSQALTKH 330
VKR+W YI N+LQ+P+D+R+++CDEKL LF+V S + +S+ LT H
Sbjct: 398 VKRLWEYINHNDLQDPSDKRRVICDEKLKELFEVDSFEDTSVSKLLTNH 446