BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00042936
         (493 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript...    66   5e-09
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    64   2e-08
gb|ABK28243.1| unknown [Arabidopsis thaliana]                          64   2e-08
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali...    64   2e-08
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part...    62   6e-08
ref|XP_006365287.1| PREDICTED: uncharacterized protein LOC102597...    62   8e-08
ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein A...    60   4e-07
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    59   5e-07
ref|XP_004306191.1| PREDICTED: putative ribonuclease H protein A...    57   3e-06
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...    55   7e-06
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop...    55   7e-06
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678...    55   7e-06
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               55   1e-05
dbj|BAD66732.1| orf147a [Beta vulgaris subsp. vulgaris] gi|54606...    55   1e-05

>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 320

 Score = 65.9 bits (159), Expect = 5e-09
 Identities = 28/58 (48%), Positives = 38/58 (65%)
 Frame = +2

Query: 200 PWYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQDD*CLLSGASVETVAHVF 373
           PWY+ +W K  +PKH+FICW+   NRL T+DRL   G+S    CLL  +  E+ AH+F
Sbjct: 150 PWYKAVWFKNHVPKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLF 207


>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 27/58 (46%), Positives = 38/58 (65%)
 Frame = +2

Query: 200 PWYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQDD*CLLSGASVETVAHVF 373
           PW++ +W K  +PKH+FICW+   NRL T+DRL   G+S    CLL  A  ++ AH+F
Sbjct: 128 PWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLF 185


>gb|ABK28243.1| unknown [Arabidopsis thaliana]
          Length = 297

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 27/58 (46%), Positives = 38/58 (65%)
 Frame = +2

Query: 200 PWYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQDD*CLLSGASVETVAHVF 373
           PW++ +W K  +PKH+FICW+   NRL T+DRL   G+S    CLL  A  ++ AH+F
Sbjct: 128 PWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLF 185


>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
          Length = 296

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 27/58 (46%), Positives = 38/58 (65%)
 Frame = +2

Query: 200 PWYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQDD*CLLSGASVETVAHVF 373
           PW++ +W K  +PKH+FICW+   NRL T+DRL   G+S    CLL  A  ++ AH+F
Sbjct: 128 PWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLF 185


>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
           gi|482569649|gb|EOA33837.1| hypothetical protein
           CARUB_v10021318mg, partial [Capsella rubella]
          Length = 290

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 26/58 (44%), Positives = 38/58 (65%)
 Frame = +2

Query: 200 PWYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQDD*CLLSGASVETVAHVF 373
           PW++ +W K  IPKH+FI W+ + NRL T+DRL   G++    CLL  +S E+  H+F
Sbjct: 112 PWFKSVWFKERIPKHAFISWVVIRNRLTTRDRLRGWGMNVPSECLLCTSSAESRLHLF 169


>ref|XP_006365287.1| PREDICTED: uncharacterized protein LOC102597191 [Solanum tuberosum]
          Length = 305

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
 Frame = +2

Query: 128 WLTQAGKYTIASGYRR---RRGKIDQWPWYRWMWSKRTIPKHSFICWLALLNRLLTKDRL 298
           W  Q G YT+  GY++   R   I  WPW + +W  +  PK  F  W+AL    LT+D +
Sbjct: 112 WGHQKGVYTVKEGYQQLCSRNPVIANWPW-KLIWRTKLPPKVVFFTWIALYEACLTQDNI 170

Query: 299 HKMGISQDD*CLLSGASVETVAHVFLCLSILSEMFAGSLCLAWKRNTT 442
            K  I   + C +     ET  H+ L   + SE+++   CL+    TT
Sbjct: 171 KKRKIQFPNRCYMCKKEAETPRHLLLHCEVASELWSMFFCLSGINWTT 218


>ref|XP_004173856.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 342

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 32/91 (35%), Positives = 46/91 (50%)
 Frame = +2

Query: 149 YTIASGYRRRRGKIDQWPWYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQDD* 328
           ++I S +   R    +  W   +W    IPKHSF  WLA+ +RL T+DRL +   S    
Sbjct: 181 FSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDRLSTRDRLSRWDRSIPLS 240

Query: 329 CLLSGASVETVAHVFLCLSILSEMFAGSLCL 421
           CLL G + E+  H+F  + +      GS CL
Sbjct: 241 CLLCGGNYESRNHLFFLVILGGRFGRGSFCL 271


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 27/69 (39%), Positives = 41/69 (59%)
 Frame = +2

Query: 200 PWYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQDD*CLLSGASVETVAHVFLC 379
           PW + +W K  IPKH+FICW+A   RL T+DRL + G++    C+L     ET  H+F  
Sbjct: 153 PWQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQ 212

Query: 380 LSILSEMFA 406
               +E+++
Sbjct: 213 CQFSNEIWS 221


>ref|XP_004306191.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 755

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
 Frame = +2

Query: 137 QAGKYTIASGYRRRRGKIDQWPW-------------YRWMWSKRTIPKHSFICWLALLNR 277
           Q+G YT+ SGY   +  +   P              ++W+W+ +T+PK     W A+ N 
Sbjct: 478 QSGSYTVRSGYHLAQATMTSIPKLKASSSHSVTSAVWKWIWNLQTLPKIKIFIWKAVSNF 537

Query: 278 LLTKDRLHKMGISQDD*CLLSGASVETVAHV-FLCLSILSEMFA 406
           + TK  LH   ISQ   C +  A  ET+ HV F C  ++   FA
Sbjct: 538 VATKGNLHFRHISQSSLCPICNAFPETIEHVLFTCPWVVCVWFA 581


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/87 (31%), Positives = 45/87 (51%)
 Frame = +2

Query: 143 GKYTIASGYRRRRGKIDQWPWYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQD 322
           G ++    +++ R   ++  WYR +W   + PK+SF+ WLA  NRL T DRL+K      
Sbjct: 259 GSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEAR 318

Query: 323 D*CLLSGASVETVAHVFLCLSILSEMF 403
             C+     +ET  H+F      S+++
Sbjct: 319 ATCVFCDEELETRDHLFFSCPYSSQIW 345


>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
          Length = 278

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/87 (31%), Positives = 45/87 (51%)
 Frame = +2

Query: 143 GKYTIASGYRRRRGKIDQWPWYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQD 322
           G ++    +++ R   ++  WYR +W   + PK+SF+ WLA  NRL T DRL+K      
Sbjct: 91  GSFSSPKTWQQIRTISNECEWYRGVWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEAR 150

Query: 323 D*CLLSGASVETVAHVFLCLSILSEMF 403
             C+     +ET  H+F      S+++
Sbjct: 151 ATCVFCDEELETRDHLFFSCPYSSQIW 177


>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
           putative protein [Arabidopsis thaliana]
          Length = 473

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 24/67 (35%), Positives = 39/67 (58%)
 Frame = +2

Query: 203 WYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQDD*CLLSGASVETVAHVFLCL 382
           WY+ +W  + IPKH+F  WLA+ NRL T DR+    +  D  C+L   ++E+  H+F   
Sbjct: 305 WYKGVWFAQAIPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSC 364

Query: 383 SILSEMF 403
              +E++
Sbjct: 365 PFATEIW 371


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 25/68 (36%), Positives = 39/68 (57%)
 Frame = +2

Query: 203  WYRWMWSKRTIPKHSFICWLALLNRLLTKDRLHKMGISQDD*CLLSGASVETVAHVFLCL 382
            W++ +W K  +PK +FICW+   NRL T+DRL + G S    C+L     E+  H+F   
Sbjct: 986  WHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRC 1045

Query: 383  SILSEMFA 406
               SE+++
Sbjct: 1046 QFSSEIWS 1053


>dbj|BAD66732.1| orf147a [Beta vulgaris subsp. vulgaris] gi|54606753|dbj|BAD66776.1|
           orf147a [Beta vulgaris subsp. vulgaris]
          Length = 147

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 30/80 (37%), Positives = 42/80 (52%)
 Frame = +2

Query: 236 PKHSFICWLALLNRLLTKDRLHKMGISQDD*CLLSGASVETVAHVFLCLSILSEMFAGSL 415
           PK +FI WL +L+RL T DRL K GI  D  C+L G   ET  H+F       E+++  L
Sbjct: 12  PKCTFITWLTILDRLATCDRLQKFGIVCDQLCVLCGNVDETRDHLFFVCEFSYEIWSSLL 71

Query: 416 CLAWKRNTTDGYSGDLEKGN 475
           C    + T   + G L+  +
Sbjct: 72  CWLGIQRTAGDWQGVLQSAH 91