BLASTX nr result
ID: Atropa21_contig00042130
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00042130
(590 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum] 65 1e-10
gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum] 62 3e-09
gb|AAV31186.2| Gag-pol polyprotein, putative [Solanum tuberosum] 62 4e-08
gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum] 55 1e-07
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola... 52 3e-07
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ... 52 3e-07
gb|AAV31185.2| Gag-pol polyprotein, putative [Solanum tuberosum] 50 7e-06
>gb|AAT39297.2| Gag-pol protein, putative [Solanum demissum]
Length = 1554
Score = 65.1 bits (157), Expect(2) = 1e-10
Identities = 40/106 (37%), Positives = 55/106 (51%)
Frame = -1
Query: 320 MCHIGMDIIYGCV*QGQFQRYCPSMRHDTRDNVAQSTNLVAPCNSQAQSGCGAAKTGTTG 141
+C G + C G F R CP R N AQS+++V P + A G T +TG
Sbjct: 469 ICREGSIGCFKCGQNGHFMRECPKNRQGNGGNRAQSSSVV-PLDMTAPRGA----TSSTG 523
Query: 140 EDLNRLYALVDRQELEVHADIFIGILTVFTFDVYALMDSEFTLSYV 3
NRLYA+ R E E ++ ++ VF FDVYAL+D +LS+V
Sbjct: 524 GGANRLYAITSRHEPENSPNVVTRMIKVFAFDVYALLDPGVSLSFV 569
Score = 26.9 bits (58), Expect(2) = 1e-10
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 436 NNQRR*NFKATSSQSQSNLGQKTYDNSICSKCGKRH 329
N Q +FKA +QS ++ Q + +KCG+ H
Sbjct: 431 NGQNSKDFKARPAQSSGSVAQGSSKPPAYAKCGRNH 466
>gb|ABI34354.1| Retrotransposon gag protein [Solanum demissum]
Length = 4543
Score = 61.6 bits (148), Expect(2) = 3e-09
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = -1
Query: 317 CHIGMDIIYGCV*QGQFQRYCPSMRHDTRD--NVAQSTNLVAPCNSQAQSGCGAAKTGTT 144
C G + C +G F + CP + + + AQS++ ++P + A G T +T
Sbjct: 1801 CRQGQTCCFRCGQEGHFMKECPKNKQSSEKLGSRAQSSS-ISPLDRMASRGA----TSST 1855
Query: 143 GEDLNRLYALVDRQELEVHADIFIGILTVFTFDVYALMDSEFTLSYV 3
G NRLYA+ R E E ++ G++ VF F+VYAL+D +LS+V
Sbjct: 1856 GGGANRLYAITSRHEQENSPNVVTGMIKVFVFNVYALLDPGASLSFV 1902
Score = 61.6 bits (148), Expect(2) = 3e-09
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = -1
Query: 317 CHIGMDIIYGCV*QGQFQRYCPSMRHDTRD--NVAQSTNLVAPCNSQAQSGCGAAKTGTT 144
C G + C +G F + CP + + + AQS++ ++P + A G T +T
Sbjct: 3311 CRQGQTCCFRCGQEGHFMKECPKNKQSSEKLGSRAQSSS-ISPLDRMASRGA----TSST 3365
Query: 143 GEDLNRLYALVDRQELEVHADIFIGILTVFTFDVYALMDSEFTLSYV 3
G NRLYA+ R E E ++ G++ VF F+VYAL+D +LS+V
Sbjct: 3366 GGGANRLYAITSRHEQENSPNVVTGMIKVFVFNVYALLDPGASLSFV 3412
Score = 25.8 bits (55), Expect(2) = 3e-09
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 436 NNQRR*NFKATSSQSQSNLGQKTYDNSICSKCGKRH 329
N Q +FK T +QS ++ + C+KCG+ H
Sbjct: 1762 NVQNSKDFKVTPAQSSGSVVRGGSSFPACAKCGRVH 1797
Score = 25.8 bits (55), Expect(2) = 3e-09
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 436 NNQRR*NFKATSSQSQSNLGQKTYDNSICSKCGKRH 329
N Q +FK T +QS ++ + C+KCG+ H
Sbjct: 3272 NVQNSKDFKVTPAQSSGSVVRGGSSFPACAKCGRVH 3307
Score = 60.8 bits (146), Expect(2) = 4e-09
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = -1
Query: 317 CHIGMDIIYGCV*QGQFQRYCPSMRHDTRD--NVAQSTNLVAPCNSQAQSGCGAAKTGTT 144
C G + C +G F + CP + + + AQS++ ++P + A G T +T
Sbjct: 291 CRQGQTCCFRCGQEGHFMKECPKNKQSSEKLGSRAQSSS-ISPPDRMASRGA----TSST 345
Query: 143 GEDLNRLYALVDRQELEVHADIFIGILTVFTFDVYALMDSEFTLSYV 3
G NRLYA+ R E E ++ G++ VF F+VYAL+D +LS+V
Sbjct: 346 GGGANRLYAITSRHEQENSPNVVTGMIKVFVFNVYALLDPGASLSFV 392
Score = 25.8 bits (55), Expect(2) = 4e-09
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 436 NNQRR*NFKATSSQSQSNLGQKTYDNSICSKCGKRH 329
N Q +FK T +QS ++ + C+KCG+ H
Sbjct: 252 NVQNSKDFKVTPAQSSGSVVRGGSSFPACAKCGRVH 287
>gb|AAV31186.2| Gag-pol polyprotein, putative [Solanum tuberosum]
Length = 401
Score = 62.4 bits (150), Expect(2) = 4e-08
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = -1
Query: 317 CHIGMDIIYGCV*QGQFQRYCPSMR--HDTRDNVAQSTNLVAPCNSQAQSGCGAAKTGTT 144
C G + + C +G F + CP R + R N AQS+++ P + + T
Sbjct: 205 CRDGSNGCFKCDQEGHFMKECPRNRQGNGNRGNRAQSSSVAPPDRATPRGA-----TLGI 259
Query: 143 GEDLNRLYALVDRQELEVHADIFIGILTVFTFDVYALMDSEFTLSYV 3
G+ NRLYA+ RQE + D+ G++ VFTFDVYA ++ +LS+V
Sbjct: 260 GKGANRLYAITSRQEQKNSPDVVTGMIKVFTFDVYAFLNPGASLSFV 306
Score = 21.2 bits (43), Expect(2) = 4e-08
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -2
Query: 352 CSKCGKRH 329
C+KCGK H
Sbjct: 194 CAKCGKNH 201
>gb|AAV31171.1| Putative polyprotein, identical [Solanum tuberosum]
Length = 1487
Score = 55.1 bits (131), Expect(2) = 1e-07
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Frame = -1
Query: 323 IMCHIGMDIIYGCV*QGQFQRYCPSMRHDTRD--NVAQSTNLVAPCNSQAQSGCGAAKTG 150
+ C G + C +G F + CP + + + + AQS+++ P + + T
Sbjct: 333 VKCRDGQTGCFECGKEGHFMKECPKNKQGSGNLGSRAQSSSVAPPRTAPRGA------TS 386
Query: 149 TTGEDLNRLYALVDRQELEVHADIFIGILTVFTFDVYALMDSEFTLSYV 3
+TG NRLYA+ E E+ ++ ++ VF FDVYAL+D +LS+V
Sbjct: 387 STGGGGNRLYAITSPHEQEISPNVVTCMIKVFAFDVYALLDPGASLSFV 435
Score = 26.9 bits (58), Expect(2) = 1e-07
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 436 NNQRR*NFKATSSQSQSNLGQKTYDNSICSKCGKRH 329
N Q +FKA +QS ++ Q C++CG+ H
Sbjct: 296 NGQNSKDFKARPTQSSGSVAQGGSLFPACARCGRTH 331
>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
Length = 1602
Score = 52.0 bits (123), Expect(2) = 3e-07
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = -1
Query: 317 CHIGMDIIYGCV*QGQFQRYCPSMRHDTRDNVAQS-TNLVAPCNSQAQSGCGAAKTGTTG 141
C G + C +G F + CP + +++ ++ VAP + G T +TG
Sbjct: 393 CRDGQTGCFKCGQEGHFVKECPKNNQGSGSLGSRTQSSSVAPPDRMTPRGA----TSSTG 448
Query: 140 EDLNRLYALVDRQELEVHADIFIGILTVFTFDVYALMDSEFTLSYV 3
NRLYA+ R E E ++ ++ VF F VYAL+D +LS+V
Sbjct: 449 GGANRLYAITSRHEQENSPNVVTAMIKVFAFYVYALLDPGASLSFV 494
Score = 28.5 bits (62), Expect(2) = 3e-07
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 436 NNQRR*NFKATSSQSQSNLGQKTYDNSICSKCGKRH 329
N Q +FKA QS ++ Q++ C++CG+ H
Sbjct: 354 NGQNSKDFKARPVQSSGSVAQRSSLFPACARCGRTH 389
>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1515
Score = 52.0 bits (123), Expect(2) = 3e-07
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = -1
Query: 317 CHIGMDIIYGCV*QGQFQRYCPSMRHDTRDNVAQS-TNLVAPCNSQAQSGCGAAKTGTTG 141
C G + C +G F + CP + +++ ++ VAP + G T +TG
Sbjct: 387 CRDGQTGCFKCGQEGHFVKECPKNNQGSGSLGSRTQSSSVAPPDRMTPRGA----TSSTG 442
Query: 140 EDLNRLYALVDRQELEVHADIFIGILTVFTFDVYALMDSEFTLSYV 3
NRLYA+ R E E ++ ++ VF F VYAL+D +LS+V
Sbjct: 443 GGANRLYAITSRHEQENSPNVVTAMIKVFAFYVYALLDPGASLSFV 488
Score = 28.5 bits (62), Expect(2) = 3e-07
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 436 NNQRR*NFKATSSQSQSNLGQKTYDNSICSKCGKRH 329
N Q +FKA QS ++ Q++ C++CG+ H
Sbjct: 348 NGQNSKDFKARPVQSSGSVAQRSSLFPACARCGRTH 383
>gb|AAV31185.2| Gag-pol polyprotein, putative [Solanum tuberosum]
Length = 271
Score = 50.4 bits (119), Expect(2) = 7e-06
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = -1
Query: 293 YGCV*QGQFQRYCPSMRHDTRDNVAQS-TNLVAPCNSQAQSGCGAAKTGTTGEDLNRLYA 117
+ C +G F + CP + + V ++ + VAP + G ++ G T NRLY
Sbjct: 119 FKCGQEGHFMQECPKNKQGNGNGVNRAHLSSVAPPDKALPRGAISSAGGGT----NRLYD 174
Query: 116 LVDRQELEVHADIFIGILTVFTFDVYALMDSEFTLSYV 3
+ RQE E D+ G++ F VYAL+D E LS+V
Sbjct: 175 IKSRQEQENSRDVVAGMIQFFDITVYALLDPEANLSFV 212
Score = 25.4 bits (54), Expect(2) = 7e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 436 NNQRR*NFKATSSQSQSNLGQKTYDNSICSKCG 338
N Q NF+A + SQ + Q C++CG
Sbjct: 85 NGQNSQNFRARPAHSQGSKAQGGTKTPACARCG 117