BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00042012
         (648 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   243   5e-62
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256...   238   1e-60
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   230   3e-58
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   216   4e-54
ref|XP_004252692.1| PREDICTED: uncharacterized protein LOC101261...   198   1e-48
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   189   8e-46
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           189   8e-46
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   188   1e-45
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   186   7e-45
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   185   9e-45
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...   183   4e-44
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   182   7e-44
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   182   1e-43
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               181   2e-43
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   180   3e-43
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               180   3e-43
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   180   3e-43
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       179   6e-43
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                176   7e-42
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   175   9e-42

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  243 bits (619), Expect = 5e-62
 Identities = 112/207 (54%), Positives = 156/207 (75%)
 Frame = +1

Query: 25   KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
            +ALA I +D APG+DG+NA+F+K+SW  IK++I   +Q+FF   +++R +NC V+TLLPK
Sbjct: 445  EALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPK 504

Query: 205  TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
                  VKE+RPI CCT++YKII+K+L +R + II  ++NEA SGFI GR I DNI+LA+
Sbjct: 505  VQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLAS 564

Query: 385  ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
            EL++ YTRKH+S + I+K+D++KAYDSVE  FLE +L    FP +F+ W+MECV TV+Y+
Sbjct: 565  ELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYS 624

Query: 565  IIVNGETTTLFDASKRLRQGDTISPCL 645
            ++VNG  T  F A K LRQGD +SP L
Sbjct: 625  VLVNGIPTQPFQARKGLRQGDPMSPFL 651


>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
           lycopersicum]
          Length = 421

 Score =  238 bits (606), Expect = 1e-60
 Identities = 114/194 (58%), Positives = 149/194 (76%)
 Frame = +1

Query: 28  ALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKT 207
           AL SI +D APG+DGYNA F+K +W IIK DI   VQ FF+ GKL++  NCT+++L+PK 
Sbjct: 114 ALQSIGNDKAPGIDGYNAFFFKYTWKIIKNDIIEVVQSFFKPGKLFKPFNCTLVSLIPKV 173

Query: 208 ASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATE 387
            SP NVKEYR ITCCT+LYKII+K++ +R   +I  +I ++  GFI GRKI +NI+LA E
Sbjct: 174 QSPKNVKEYRTITCCTVLYKIISKVITNRMHDVIHNVICDSQVGFILGRKISENILLAHE 233

Query: 388 LVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYTI 567
           LV +YTRK+IS +S++KIDLQK YDSVE  FL+ V+ GL FP  F +W+M CV TVNYTI
Sbjct: 234 LVNSYTRKNISPRSMLKIDLQKVYDSVEWPFLKQVMVGLGFPDMFTQWVMHCVKTVNYTI 293

Query: 568 IVNGETTTLFDASK 609
           +VNG+TT  FDA++
Sbjct: 294 VVNGQTTQRFDAAR 307


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  230 bits (586), Expect = 3e-58
 Identities = 107/207 (51%), Positives = 153/207 (73%)
 Frame = +1

Query: 25   KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
            +ALA I D  APG+DG+N+ F+K+SW +IK++I   + DFF+ G +++ +NCT +TL+PK
Sbjct: 448  QALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPK 507

Query: 205  TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
                 + K+YRPI CC+ LYKII+KIL  R Q +I  +++ A +GFI  R I DNI+LAT
Sbjct: 508  IDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLAT 567

Query: 385  ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
            EL++ Y R+H+S + +IK+D++KAYDSVE +FLE +LK L FP  FI+W+M CV TV+Y+
Sbjct: 568  ELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYS 627

Query: 565  IIVNGETTTLFDASKRLRQGDTISPCL 645
            I++NG  +  FDA K LRQGD +SP L
Sbjct: 628  ILLNGIPSIPFDAQKGLRQGDPLSPFL 654


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  216 bits (551), Expect = 4e-54
 Identities = 104/205 (50%), Positives = 146/205 (71%)
 Frame = +1

Query: 31  LASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKTA 210
           L S+    APG+DGYN HF+K SW+II + +  A+ DFF+TG + + +NCT +TLLPK  
Sbjct: 130 LFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEV 189

Query: 211 SPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATEL 390
           +  +VK +RPI CC+++YKII+KIL SR Q ++  +++E  S F+ GR I DNIIL+ EL
Sbjct: 190 NVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHEL 249

Query: 391 VKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYTII 570
           VK+Y+RK IS + ++KIDLQKAY+SVE  F++ ++  L F  KF+ W+M C+ T +YT  
Sbjct: 250 VKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFN 309

Query: 571 VNGETTTLFDASKRLRQGDTISPCL 645
           +NG+ T  F A K LRQGD ISP L
Sbjct: 310 INGDLTRPFAAKKGLRQGDPISPYL 334


>ref|XP_004252692.1| PREDICTED: uncharacterized protein LOC101261795 [Solanum
           lycopersicum]
          Length = 413

 Score =  198 bits (504), Expect = 1e-48
 Identities = 97/166 (58%), Positives = 124/166 (74%)
 Frame = +1

Query: 31  LASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKTA 210
           L S  +D APG+DGYNA F+K +W IIK+D+  AV++FF TGKL++  NCT+++L+PK  
Sbjct: 248 LQSYGNDKAPGIDGYNALFFKHTWKIIKKDVIEAVKNFFTTGKLFKPFNCTLVSLIPKVQ 307

Query: 211 SPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATEL 390
            P  VKEY PI CCT+LYKII+K++  R   +I  +I E+ +GFI GRKI DNIILA EL
Sbjct: 308 CPKTVKEYTPIACCTVLYKIISKVITRRMHDVIHDVICESQAGFIPGRKIADNIILAHEL 367

Query: 391 VKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIK 528
           VK YTRK+IS + I+KIDL KAYDSVE  FLE V+ GL FP  FI+
Sbjct: 368 VKTYTRKNISPRIILKIDLHKAYDSVEWPFLEQVMVGLGFPEMFIQ 413


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score =  189 bits (479), Expect = 8e-46
 Identities = 85/206 (41%), Positives = 137/206 (66%)
 Frame = +1

Query: 28  ALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKT 207
           A  S+  +   G DGY+  F++ +WSII  ++  A+ +FF +G+L +Q N T L L+PKT
Sbjct: 315 AFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKT 374

Query: 208 ASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATE 387
           ++   + E+RPI+C   LYK+I+K+L SR Q ++  +I  + S F+ GR + +N++LATE
Sbjct: 375 SNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATE 434

Query: 388 LVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYTI 567
           +V  Y R +IS + ++K+DL+KA+DSV+  F+   L+ L  P ++I W+ +C+ T ++TI
Sbjct: 435 MVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTI 494

Query: 568 IVNGETTTLFDASKRLRQGDTISPCL 645
            VNG T   F ++K LRQGD +SP L
Sbjct: 495 SVNGATGGFFRSTKGLRQGDPLSPYL 520


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  189 bits (479), Expect = 8e-46
 Identities = 85/206 (41%), Positives = 137/206 (66%)
 Frame = +1

Query: 28  ALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKT 207
           A  S+  +   G DGY+  F++ +WSII  ++  A+ +FF +G+L +Q N T L L+PKT
Sbjct: 315 AFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKT 374

Query: 208 ASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATE 387
           ++   + E+RPI+C   LYK+I+K+L SR Q ++  +I  + S F+ GR + +N++LATE
Sbjct: 375 SNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATE 434

Query: 388 LVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYTI 567
           +V  Y R +IS + ++K+DL+KA+DSV+  F+   L+ L  P ++I W+ +C+ T ++TI
Sbjct: 435 MVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTI 494

Query: 568 IVNGETTTLFDASKRLRQGDTISPCL 645
            VNG T   F ++K LRQGD +SP L
Sbjct: 495 SVNGATGGFFRSTKGLRQGDPLSPYL 520


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score =  188 bits (478), Expect = 1e-45
 Identities = 93/207 (44%), Positives = 137/207 (66%)
 Frame = +1

Query: 25  KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
           K + S+  D +PG DGY + FYK SW II +++  A+Q FF  G L + VN T+L L+PK
Sbjct: 181 KVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPK 240

Query: 205 TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
                 +K+YRPI+CC +LYK I+KILA+R ++I+P  I    S F+  R +I+N++LAT
Sbjct: 241 KKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLAT 300

Query: 385 ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
           ELVK Y +  IS +  +KID+ KA+DS++  FL  VL  + FP +FI W+  C+ T +++
Sbjct: 301 ELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFS 360

Query: 565 IIVNGETTTLFDASKRLRQGDTISPCL 645
           I VNGE    F +++ LRQG ++SP L
Sbjct: 361 IQVNGELAGYFRSARGLRQGCSLSPYL 387


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  186 bits (471), Expect = 7e-45
 Identities = 92/207 (44%), Positives = 134/207 (64%)
 Frame = +1

Query: 25   KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
            K L  +  D +PG DGY + F+K +W II ++   AVQ FF  G L + +N T+L L+PK
Sbjct: 460  KVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPK 519

Query: 205  TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
                  +K+YRPI+CC +LYK+I+KI+A+R + ++P  I    S F+  R +I+N++LAT
Sbjct: 520  KTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLAT 579

Query: 385  ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
            ELVK Y +  IS +  IKID+ KA+DSV+  FL  V   L FPR+FI W+  C+ T +++
Sbjct: 580  ELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFS 639

Query: 565  IIVNGETTTLFDASKRLRQGDTISPCL 645
            + VNGE    F +S+ LRQG  +SP L
Sbjct: 640  VQVNGELAGYFQSSRGLRQGCALSPYL 666


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  185 bits (470), Expect = 9e-45
 Identities = 87/207 (42%), Positives = 139/207 (67%)
 Frame = +1

Query: 25  KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
           K + S+ +D +PG DGY A FYK +W+II  +   A+Q FF  G L + +N T+L L+PK
Sbjct: 348 KVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPK 407

Query: 205 TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
                 +K+YRPI+CC +LYK+I+KI+A+R + ++P  I    S F+  R +I+N++LAT
Sbjct: 408 KKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLAT 467

Query: 385 ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
           E+VK Y +  +S++  +KID+ KA+DSV+  FL  VL+ + FP +F  W+  C+ T +++
Sbjct: 468 EIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFS 527

Query: 565 IIVNGETTTLFDASKRLRQGDTISPCL 645
           + VNGE   +F +++ LRQG ++SP L
Sbjct: 528 VQVNGELAGVFSSARELRQGCSLSPYL 554


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score =  183 bits (464), Expect = 4e-44
 Identities = 88/194 (45%), Positives = 131/194 (67%)
 Frame = +1

Query: 28   ALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKT 207
            AL S+ +D +PG DGY + FYKR+W II  +   AV+ FF+ G L + VN T+L L+PK 
Sbjct: 876  ALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKK 935

Query: 208  ASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATE 387
                 +K+YRPI+CC ++YK+I+KI+A+R + ++P  I    S F+  R +I+N++LATE
Sbjct: 936  LEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATE 995

Query: 388  LVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYTI 567
            LVK Y +  IS +  IKID+ KA+DSV+  FL+ VL  L FP +F+ W+M CV T ++++
Sbjct: 996  LVKDYHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDFPPEFVHWVMLCVTTASFSV 1055

Query: 568  IVNGETTTLFDASK 609
             VNGE    F +S+
Sbjct: 1056 QVNGELAGYFQSSR 1069


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  182 bits (462), Expect = 7e-44
 Identities = 86/207 (41%), Positives = 135/207 (65%)
 Frame = +1

Query: 25   KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
            K L ++ ++ +PG DGY + F+K +WS+   D   A+Q FF  G L + +N T+L L+PK
Sbjct: 757  KVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPK 816

Query: 205  TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
                I +K+YRPI+CC +LYK+I+KILA+R + ++P  I +  S F+  R +++N++LAT
Sbjct: 817  KDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLAT 876

Query: 385  ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
            ELVK Y ++ ++ +  +KID+ KA+DSV+  FL   L+ L FP  F  W+  C+ T  ++
Sbjct: 877  ELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFS 936

Query: 565  IIVNGETTTLFDASKRLRQGDTISPCL 645
            + VNGE    F +S+ LRQG  +SP L
Sbjct: 937  VQVNGELAGFFGSSRGLRQGCALSPYL 963


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  182 bits (461), Expect = 1e-43
 Identities = 81/203 (39%), Positives = 138/203 (67%)
 Frame = +1

Query: 37   SIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKTASP 216
            ++  + +PG DGY + F+K++WSI+   +  AVQ+FF++G+L  Q N T +T++PK  + 
Sbjct: 457  ALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNA 516

Query: 217  INVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATELVK 396
              + E+RPI+CC  +YK+I+K+LA R + I+P  I+ + S F+ GR + +N++LATELV+
Sbjct: 517  DRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQ 576

Query: 397  AYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYTIIVN 576
             + + +IS++ ++K+DL+KA+DSV   F+   LK    P +F+ W+ +C+ + +++I V+
Sbjct: 577  GFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVS 636

Query: 577  GETTTLFDASKRLRQGDTISPCL 645
            G     F  SK LRQGD +SP L
Sbjct: 637  GSLCGYFKGSKGLRQGDPLSPSL 659


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  181 bits (458), Expect = 2e-43
 Identities = 88/205 (42%), Positives = 133/205 (64%)
 Frame = +1

Query: 31  LASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKTA 210
           L S+  D +PG DGY + FYK +W II ++    VQ FFQ G L + +N  +L L+PK  
Sbjct: 109 LFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSIILALIPKKL 168

Query: 211 SPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATEL 390
           +   +++YRPI+CC +LYK+I+KI+A+R + ++P  I E  S F+  R +I+N++LATEL
Sbjct: 169 AAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATEL 228

Query: 391 VKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYTII 570
           VK Y +  ISA+  IKID+ KA+DSV+  FL   L  + F   FI W+  C+ T ++++ 
Sbjct: 229 VKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQ 288

Query: 571 VNGETTTLFDASKRLRQGDTISPCL 645
           VNG+    F + + LRQG ++SP L
Sbjct: 289 VNGDLVGYFQSKRGLRQGCSLSPYL 313


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  180 bits (457), Expect = 3e-43
 Identities = 81/207 (39%), Positives = 140/207 (67%)
 Frame = +1

Query: 25   KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
            +A  S+  + A G DGY++ F+K  W ++  ++  AVQ+FF++G+L +Q N T L L+PK
Sbjct: 455  EAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPK 514

Query: 205  TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
              +   + ++RPI+C   LYK+IAK+L SR ++++  +I+ + S F+ GR + +N++LAT
Sbjct: 515  ITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLAT 574

Query: 385  ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
            E+V  Y  K+IS++ ++K+DL+KA+DSV   F+    + L  P KF+ W+ +C+ T  ++
Sbjct: 575  EIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFS 634

Query: 565  IIVNGETTTLFDASKRLRQGDTISPCL 645
            ++VNG ++  F ++K LRQGD +SP L
Sbjct: 635  VMVNGSSSGFFKSNKGLRQGDPLSPYL 661


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  180 bits (457), Expect = 3e-43
 Identities = 89/207 (42%), Positives = 132/207 (63%)
 Frame = +1

Query: 25  KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
           K L S+ +D +PG DG+ + F+K SW I+  +   A+Q FF  G L + VN T+L L+PK
Sbjct: 13  KVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNSTILALIPK 72

Query: 205 TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
                 +K+YRPI+CC ++YK+I+KILA+R + ++P  I    S F+  R +I+N++LAT
Sbjct: 73  KLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLIENVLLAT 132

Query: 385 ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
           +LVK Y +  IS +  IKID+ KA DSV+  FL   L  + FP  FI W+  C+ T +++
Sbjct: 133 DLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFS 192

Query: 565 IIVNGETTTLFDASKRLRQGDTISPCL 645
           + VNGE    F +S+ LRQG  +SP L
Sbjct: 193 VQVNGELAGFFQSSRGLRQGCALSPYL 219


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  180 bits (457), Expect = 3e-43
 Identities = 81/207 (39%), Positives = 140/207 (67%)
 Frame = +1

Query: 25   KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
            +A  S+  + A G DGY++ F+K  W ++  ++  AVQ+FF++G+L +Q N T L L+PK
Sbjct: 455  EAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPK 514

Query: 205  TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
              +   + ++RPI+C   LYK+IAK+L SR ++++  +I+ + S F+ GR + +N++LAT
Sbjct: 515  ITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLAT 574

Query: 385  ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
            E+V  Y  K+IS++ ++K+DL+KA+DSV   F+    + L  P KF+ W+ +C+ T  ++
Sbjct: 575  EIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFS 634

Query: 565  IIVNGETTTLFDASKRLRQGDTISPCL 645
            ++VNG ++  F ++K LRQGD +SP L
Sbjct: 635  VMVNGSSSGFFKSNKGLRQGDPLSPYL 661


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  179 bits (454), Expect = 6e-43
 Identities = 82/206 (39%), Positives = 133/206 (64%)
 Frame = +1

Query: 28   ALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKT 207
            AL S+  + + G DG+ A F+  SWSI+  ++  A+++FF +G L +Q N T + L+PK 
Sbjct: 455  ALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKI 514

Query: 208  ASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATE 387
             +P    ++RPI+C   LYK+IA++L  R Q+++  +I+ A S F+ GR + +N++LAT+
Sbjct: 515  VNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATD 574

Query: 388  LVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYTI 567
            LV  Y   +IS + ++K+DL+KA+DSV   F+   L+ L  P KFI W+ +C+ T  +T+
Sbjct: 575  LVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTV 634

Query: 568  IVNGETTTLFDASKRLRQGDTISPCL 645
             +NG     F ++K LRQGD +SP L
Sbjct: 635  SINGGNGGFFKSTKGLRQGDPLSPYL 660


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  176 bits (445), Expect = 7e-42
 Identities = 84/207 (40%), Positives = 131/207 (63%)
 Frame = +1

Query: 25  KALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPK 204
           K L ++  +  PG DGY + F+K +WSI  +D   A++ FF  G L + +N T+L L+PK
Sbjct: 33  KVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKGLNATILALIPK 92

Query: 205 TASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILAT 384
                 +++YRPI+CC ++YK+I+KI+A+R + ++P  I +  S F+  R +I+N++LAT
Sbjct: 93  KDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLIENVLLAT 152

Query: 385 ELVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYT 564
           ELVK Y +  IS +  +KID+ KA+DSV+  FL   L+ L FP  F  W+  C+ T  ++
Sbjct: 153 ELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFS 212

Query: 565 IIVNGETTTLFDASKRLRQGDTISPCL 645
           + VNGE    F + + LRQG  +SP L
Sbjct: 213 VQVNGELAGFFGSKRGLRQGCALSPYL 239


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score =  175 bits (444), Expect = 9e-42
 Identities = 82/206 (39%), Positives = 134/206 (65%)
 Frame = +1

Query: 28  ALASIADDNAPGVDGYNAHFYKRSWSIIKEDIQGAVQDFFQTGKLYRQVNCTVLTLLPKT 207
           A  S+  + A G DG++  F+   W II  ++  A+ +FF +GKL +Q N T L L+PK 
Sbjct: 352 AFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKI 411

Query: 208 ASPINVKEYRPITCCTILYKIIAKILASRKQQIIPCIINEAHSGFISGRKIIDNIILATE 387
            +  ++ ++RPI+C   +YK+I+K+L  R +  +P  I+ + S F+ GR  ++N++LATE
Sbjct: 412 TNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATE 471

Query: 388 LVKAYTRKHISAKSIIKIDLQKAYDSVE*IFLE*VLKGLCFPRKFIKWLMECVHTVNYTI 567
           LV  Y +K+I+  S++K+DL+KA+DSV   F+   L+ L  P KF  W++EC+ T ++++
Sbjct: 472 LVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSV 531

Query: 568 IVNGETTTLFDASKRLRQGDTISPCL 645
           I+NG +   F +SK LRQGD +SP L
Sbjct: 532 ILNGHSAGHFWSSKGLRQGDPMSPYL 557