BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00041541
         (588 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK29467.1| polyprotein-like [Solanum chilense]                     64   3e-08
ref|XP_002314389.1| predicted protein [Populus trichocarpa]            62   8e-08
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]            62   1e-07
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    59   9e-07
ref|XP_002333859.1| predicted protein [Populus trichocarpa]            58   2e-06
ref|XP_002298300.1| predicted protein [Populus trichocarpa]            57   3e-06
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]          57   3e-06
emb|CAN77158.1| hypothetical protein VITISV_019025 [Vitis vinifera]    56   6e-06

>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 63.9 bits (154), Expect = 3e-08
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
 Frame = -2

Query: 587 YHCVKSDHIKRFCKVLKXXXXXXXXXXXXTKAAVMMV--EDVALIMCE---CNYIGDSDT 423
           Y+C +  H KR C   K               A M+   +DV L++ E   C ++  +++
Sbjct: 234 YNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTES 293

Query: 422 EWVTDSTTFYHCVPHKELFTIYKVGDFSRINMGNSTRATIVGFGD 288
           EWV D+   YH  P ++LF  Y  GD+  + MGN++ + I G GD
Sbjct: 294 EWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGD 338


>ref|XP_002314389.1| predicted protein [Populus trichocarpa]
          Length = 341

 Score = 62.4 bits (150), Expect = 8e-08
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
 Frame = -2

Query: 587 YHCVKSDHIKRFCKVLKXXXXXXXXXXXXTK--AAVMMVEDVALIMCE-CNYIGDSDTEW 417
           Y+C K  HI++ C+  K                AAV+   DVA++  + C  +   DT W
Sbjct: 241 YYCDKPGHIQKDCRKYKRDKKGRDEDKNEENGTAAVVFDGDVAIVCDDSCVNLACQDTTW 300

Query: 416 VTDSTTFYHCVPHKELFTIYKVGDFSRINMGNSTRATIVG 297
           V DS   YH  P ++ +T Y   DF ++ MGN + A +VG
Sbjct: 301 VADSAASYHVTPRRDFYTSYTACDFGQVRMGNQSMANVVG 340


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
 Frame = -2

Query: 587 YHCVKSDHIKRFCKVLKXXXXXXXXXXXXTKAAVMMVEDVALIMCECNYIGDSDT----- 423
           ++C K  HIKRFC+  +             + +    +D      E N + D D      
Sbjct: 231 HYCKKKGHIKRFCRQFQNDQKKNKGKKVKPEESS---DDETNSFGEFNVVYDDDIINLTT 287

Query: 422 ---EWVTDSTTFYHCVPHKELFTIYKVGDFSRINMGNSTRATIVGFGD 288
               WV DS    H  P +ELF+ Y +GDF R+ MGN+  +T+VG GD
Sbjct: 288 QEMTWVIDSGATIHATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGD 335


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = -2

Query: 587 YHCVKSDHIKRFCKVLKXXXXXXXXXXXXTKAAVMMVEDVALIMC-----ECNYIGDSDT 423
           Y+C +  H KR C   +               A M+  +  +++      EC ++   ++
Sbjct: 233 YNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPES 292

Query: 422 EWVTDSTTFYHCVPHKELFTIYKVGDFSRINMGNSTRATIVGFGD 288
           EWV D+   +H  P ++LF  Y  GDF  + MGN++ + I G GD
Sbjct: 293 EWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGD 337


>ref|XP_002333859.1| predicted protein [Populus trichocarpa]
          Length = 207

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -2

Query: 587 YHCVKSDHIKRFCKVLKXXXXXXXXXXXXTK--AAVMMVEDVALIMCE-CNYIGDSDTEW 417
           Y+C K  H+++ C+  K                AAV+   DVA++  + C  +   DT W
Sbjct: 108 YYCDKPGHMQKDCRKYKRDKKGRDEDKNEENGTAAVVFDGDVAIVCDDGCVNLACQDTTW 167

Query: 416 VTDSTTFYHCVPHKELFTIYKVGDFSRINMGN 321
           V DS   YH  P ++ +T Y  GDF ++ MGN
Sbjct: 168 VADSAASYHVTPRRDFYTSYTAGDFGQVRMGN 199


>ref|XP_002298300.1| predicted protein [Populus trichocarpa]
          Length = 325

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = -2

Query: 428 DTEWVTDSTTFYHCVPHKELFTIYKVGDFSRINMGNSTRATIVGFGD 288
           DT WVT+ST  YH +P ++ +T Y  GDF ++ MGN   A +VG GD
Sbjct: 203 DTIWVTNSTASYHVMPRRDFYTSYTTGDFVQVRMGNQGMANVVGIGD 249


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = -2

Query: 587 YHCVKSDHIKRFCKVLKXXXXXXXXXXXXTKAAVMMVEDVALIMCECNYIGDS--DTEWV 414
           ++C K  HIK++    K                  +  D+ L+ C+ N I  +  +T W+
Sbjct: 232 HYCGKKSHIKKYSFKWKREKKQDNKDGDTGNQVATVRADL-LVACDDNVINVACHETTWI 290

Query: 413 TDSTTFYHCVPHKELFTIYKVGDFSRINMGNSTRATIVGFG 291
            DS   YH  P KE FT Y  GDF  + MGN  +  + G G
Sbjct: 291 VDSGAAYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTG 331


>emb|CAN77158.1| hypothetical protein VITISV_019025 [Vitis vinifera]
          Length = 788

 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
 Frame = -2

Query: 584 HCVKSDHIKRFCKVLKXXXXXXXXXXXXTK---AAVMMVEDVALIMCE--CNYIGDSDTE 420
           +C K  HIKR C+  K                 AAV    D   I+C+  C  +   D+ 
Sbjct: 102 YCDKPGHIKRECRKFKREQFKRKGEEQKDDKDIAAVASNGDTINIVCDDACVNLACQDST 161

Query: 419 WVTDSTTFYHCVPHKELFTIYKVGDFSRINMGNSTRATIVGFGD 288
           WV D+TT +H    ++ F+ Y  G F  + MGN  +  I+G  D
Sbjct: 162 WVVDTTTSFHITARRDFFSSYTSGSFGWVKMGNEAKCEIIGMRD 205