BLASTX nr result
ID: Atropa21_contig00041401
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00041401
(604 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 62 1e-07
ref|XP_004966626.1| PREDICTED: putative ribonuclease H protein A... 60 4e-07
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 60 4e-07
ref|XP_004966665.1| PREDICTED: uncharacterized protein LOC101779... 60 5e-07
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 59 8e-07
gb|EMT07574.1| Myosin-2 heavy chain [Aegilops tauschii] 58 2e-06
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ... 58 2e-06
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 58 2e-06
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 58 2e-06
ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, part... 57 4e-06
gb|EMJ20613.1| hypothetical protein PRUPE_ppa021915mg, partial [... 57 4e-06
ref|NP_001065370.1| Os10g0559400 [Oryza sativa Japonica Group] g... 56 9e-06
gb|AAP54997.2| retrotransposon protein, putative, unclassified, ... 56 9e-06
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 62.0 bits (149), Expect = 1e-07
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 5/146 (3%)
Frame = +3
Query: 78 DFGHCWIWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYC-HTTEFLEHIFL 254
D H WIW+ C KIK F++ ++ L + + ++ CP C E L+H+F
Sbjct: 1034 DRSHDWIWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFR 1093
Query: 255 TCPKEAQTWNHLGINSTFQDT----LPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWH 422
C W+ TFQ + + +W+K +S +G S ++ ++ P LW+
Sbjct: 1094 RCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACSS----QQKDGYSTNWSLIFPYILWN 1149
Query: 423 IWLNRNRNTLDKTQHTTSVTHIINHA 500
+W RNR D + T+ + I+N +
Sbjct: 1150 LWKARNRLVFD--NNITAPSDILNRS 1173
>ref|XP_004966626.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Setaria
italica]
Length = 561
Score = 60.5 bits (145), Expect = 4e-07
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = +3
Query: 93 WIWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYC-HTTEFLEHIFLTCPKE 269
+IW+ +++FF++LL+ E++ L K NI++ C C H E +HI TCP
Sbjct: 427 FIWRNRAPPRVQFFIWLLVQERIQCRHNLRKKNIVQDASCELCGHHDETADHIIFTCPTA 486
Query: 270 AQTWNHLGINSTFQDTLPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIWLNRNRNT 449
+ W +G S +K + +P T+P + L WHIW +RN
Sbjct: 487 SAFWRRIGATSLDGAQ----VKELWNTPLPSTLPQLHRTVFLFL--CCCWHIWKHRNSVV 540
Query: 450 LD 455
D
Sbjct: 541 FD 542
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 60.5 bits (145), Expect = 4e-07
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Frame = +3
Query: 78 DFGHCWIWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYC-HTTEFLEHIFL 254
D H WIW+ C KIK F++ ++ L + + ++ CP C E L+H+F
Sbjct: 1034 DRSHDWIWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFR 1093
Query: 255 TCPKEAQTWNHLGINSTFQDT----LPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWH 422
C W+ TFQ + + +W+K +S +G ++ ++ P LW+
Sbjct: 1094 RCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACSS----QQKDGYGTNWSLIFPYILWN 1149
Query: 423 IWLNRNRNTLDKTQHTTSVTHIINHA 500
+W RNR D + T+ + I+N +
Sbjct: 1150 LWKARNRLVFD--NNITAPSDILNRS 1173
>ref|XP_004966665.1| PREDICTED: uncharacterized protein LOC101779074 [Setaria italica]
Length = 170
Score = 60.1 bits (144), Expect = 5e-07
Identities = 42/137 (30%), Positives = 63/137 (45%)
Frame = +3
Query: 72 PPDFGHCWIWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYCHTTEFLEHIF 251
P D IW + + K FL+LL ++L SA L +I+ES LC YC E HI
Sbjct: 5 PADAFAASIWHNAAIPRCKQFLWLLHRDRLPSAALLHHRHIVESPLCAYCGEHEDQHHIL 64
Query: 252 LTCPKEAQTWNHLGINSTFQDTLPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIWL 431
L CP W +G + L ++ + + +P P ++ I+ I LW+IW
Sbjct: 65 LQCPPAKLVWRAIGWPAA--PDLLDFRELWALPALPDETP--PAVRSAIITAI-LWNIWK 119
Query: 432 NRNRNTLDKTQHTTSVT 482
RN D + H+ + T
Sbjct: 120 ARNSWIFDSSLHSAATT 136
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 59.3 bits (142), Expect = 8e-07
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 5/143 (3%)
Frame = +3
Query: 87 HCWIWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYC-HTTEFLEHIFLTCP 263
H WIW+ C KIK F++ ++ L + + ++ CP C E L+H+F C
Sbjct: 1569 HDWIWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCL 1628
Query: 264 KEAQTWNHLGINSTFQDT----LPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIWL 431
W+ TFQ + + +W+K +S +G ++ ++ P LW++W
Sbjct: 1629 LAEACWDSAVPPLTFQTSNHLHMHSWMKAACSS----QQKDGYGTNWSLIFPYILWNLWK 1684
Query: 432 NRNRNTLDKTQHTTSVTHIINHA 500
RNR D + T+ + I+N +
Sbjct: 1685 ARNRLVFD--NNITAPSDILNRS 1705
>gb|EMT07574.1| Myosin-2 heavy chain [Aegilops tauschii]
Length = 1709
Score = 58.2 bits (139), Expect = 2e-06
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Frame = +3
Query: 96 IWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYC-HTTEFLEHIFLTCPKEA 272
IW K+K F +LL ++L + LA +I++S++CP C +E H+F+TCP
Sbjct: 1562 IWSAKVSRKLKVFAWLLFKDRLNTRVNLAHKHIIDSDICPRCARLSEDSSHLFITCPFAN 1621
Query: 273 QTWNHLGINSTFQDTLPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIWLNRNRNTL 452
+ W L + D W T T P+ S+ ++ LW IW RN
Sbjct: 1622 RIWQRLELLPQTNDITDLWDVT--------TPPHLSTTAWPSALLALLWMIWAARNDMVF 1673
Query: 453 DKTQHTTSVT 482
++ +T
Sbjct: 1674 RTVDQSSVIT 1683
>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
gi|332641254|gb|AEE74775.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 484
Score = 58.2 bits (139), Expect = 2e-06
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Frame = +3
Query: 96 IWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYCH-TTEFLEHIFLTCPKEA 272
IW P + K+K FL+ L++ L + E L + CP CH E + H TCP
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFAT 221
Query: 273 QTWNHLGINSTFQDTLPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIWLNRNRNTL 452
W + + N + + ++++ + S + +LP +W IW RN
Sbjct: 222 MAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVF 281
Query: 453 DKTQHTTSVT 482
+K + + S T
Sbjct: 282 NKFRESPSKT 291
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 58.2 bits (139), Expect = 2e-06
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Frame = +3
Query: 96 IWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYCH-TTEFLEHIFLTCPKEA 272
IW P + K+K FL+ L++ L + E L + +CP CH E + H TCP
Sbjct: 1202 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFAT 1261
Query: 273 QTWNHLGINSTFQDTLPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIWLNRNRNTL 452
W + + N + + ++++ + S + +LP +W IW RN
Sbjct: 1262 MAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVF 1321
Query: 453 DKTQHTTSVT 482
+K + + S T
Sbjct: 1322 NKFRESPSKT 1331
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 58.2 bits (139), Expect = 2e-06
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Frame = +3
Query: 96 IWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYCH-TTEFLEHIFLTCPKEA 272
IW P + K+K FL+ L++ L + E L + CP CH E + H TCP
Sbjct: 1428 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFAT 1487
Query: 273 QTWNHLGINSTFQDTLPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIWLNRNRNTL 452
W + + N + + ++++ + S + +LP +W IW RN
Sbjct: 1488 MAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVF 1547
Query: 453 DKTQHTTSVT 482
+K + + S T
Sbjct: 1548 NKFRESPSKT 1557
>ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, partial [Capsella rubella]
gi|482554155|gb|EOA18348.1| hypothetical protein
CARUB_v10006875mg, partial [Capsella rubella]
Length = 438
Score = 57.0 bits (136), Expect = 4e-06
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Frame = +3
Query: 96 IWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYCHTT-EFLEHIFLTCPKEA 272
IW+ K+K FL+ L + + A+ L + NI + C +C + E EHIF TCP+
Sbjct: 108 IWQLNIAPKLKHFLWRLASRAIGVADNLRRRNININPYCSWCCSDFESSEHIFFTCPRVH 167
Query: 273 QTWNHLGI--------NSTFQDTLPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIW 428
W +G+ N + +D L + H+ S +P I P + LW +W
Sbjct: 168 PIWRMVGVPLTLLGDPNISLEDKLRYLFRLHNDSSLP--------IFKRTSPFLVLWRLW 219
Query: 429 LNRNRNTLDKTQHTT 473
RN ++ TT
Sbjct: 220 KTRNNLVFNRKSTTT 234
>gb|EMJ20613.1| hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
Length = 509
Score = 57.0 bits (136), Expect = 4e-06
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Frame = +3
Query: 72 PPDFGHC-----W--IWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYC-HT 227
PP H W +WK L KIKFF + +L+ + + L K I +S +CP C +
Sbjct: 226 PPQTSHVVSTQVWKGLWKLKSLPKIKFFCWRILSNAIATKLNLFKRKISQSPMCPVCENN 285
Query: 228 TEFLEHIFLTCPKEAQTWNHLGINSTFQD----TLPNWIKTHSTSLIPYTIPNGSSISY* 395
E +EH+FL CP A W +N + T NW+ + + + ++
Sbjct: 286 EESVEHLFLLCPWTAAVWFGSPLNYRVHNQSITTFDNWLNSMFQLNLTSILDRNRLMT-- 343
Query: 396 ILPPIALWHIWLNRNRNTLDKTQ-HTTSVTH 485
+ LW IW R + ++ Q H V H
Sbjct: 344 -IISFILWEIWKARCKFVIEGRQLHPIHVLH 373
>ref|NP_001065370.1| Os10g0559400 [Oryza sativa Japonica Group]
gi|110289565|gb|ABG66255.1| retrotransposon protein,
putative, unclassified, expressed [Oryza sativa Japonica
Group] gi|113639902|dbj|BAF27207.1| Os10g0559400 [Oryza
sativa Japonica Group] gi|215693820|dbj|BAG89019.1|
unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 55.8 bits (133), Expect = 9e-06
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +3
Query: 96 IWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYCHT-TEFLEHIFLTCPKEA 272
IWK K+K F +LL+ ++L++ + L K I+++ +C C E +H+ TCP
Sbjct: 113 IWKCRAPLKVKLFAWLLVRDRLSTKQNLLKKKIVQNGVCDVCQQGDETADHMCFTCPFVQ 172
Query: 273 QTWNHLGINSTFQDTLPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIWLNRN 440
W + +N T QD W+ H PN + + + + +W IW +R+
Sbjct: 173 SFWERIRVNPTIQDV---WL-LHQLK----PSPNVPELHHHVFFLLCMWAIWNHRH 220
>gb|AAP54997.2| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group] gi|215686780|dbj|BAG89630.1|
unnamed protein product [Oryza sativa Japonica Group]
Length = 274
Score = 55.8 bits (133), Expect = 9e-06
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +3
Query: 96 IWKQPCLNKIKFFLYLLLNEKLTSAEYLAKINILESNLCPYCHT-TEFLEHIFLTCPKEA 272
IWK K+K F +LL+ ++L++ + L K I+++ +C C E +H+ TCP
Sbjct: 113 IWKCRAPLKVKLFAWLLVRDRLSTKQNLLKKKIVQNGVCDVCQQGDETADHMCFTCPFVQ 172
Query: 273 QTWNHLGINSTFQDTLPNWIKTHSTSLIPYTIPNGSSISY*ILPPIALWHIWLNRN 440
W + +N T QD W+ H PN + + + + +W IW +R+
Sbjct: 173 SFWERIRVNPTIQDV---WL-LHQLK----PSPNVPELHHHVFFLLCMWAIWNHRH 220