BLASTX nr result

ID: Atropa21_contig00039292 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00039292
         (494 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006364143.1| PREDICTED: probable DEAD-box ATP-dependent R...    74   1e-23
ref|XP_004252645.1| PREDICTED: probable DEAD-box ATP-dependent R...    69   4e-22

>ref|XP_006364143.1| PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48-like
           [Solanum tuberosum]
          Length = 832

 Score = 74.3 bits (181), Expect(2) = 1e-23
 Identities = 35/51 (68%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
 Frame = -1

Query: 203 YRCYSTDMKNGDRLRKFDFTKN-SSTSEGKSNPEGLVVKGDDRKARWPRFR 54
           +RCYS D  NG+RLRK DFT+N SS SE KS   GLVVKGD+RK +WPRFR
Sbjct: 221 FRCYSVDRMNGNRLRKLDFTRNESSESEDKSRSVGLVVKGDERKTKWPRFR 271



 Score = 60.8 bits (146), Expect(2) = 1e-23
 Identities = 32/91 (35%), Positives = 50/91 (54%)
 Frame = -2

Query: 469 NDIVDNSNFRDARYSDVLRNYNFEKARHCCTNVDAKSRDVSRIYNFQRERYFSANVRNDI 290
           ++ +D    RD ++SDV R+Y+F++ARH CTNV     ++ R  N               
Sbjct: 140 SESIDLRKLRDTKFSDVPRSYSFQQARHFCTNVRDVIAEICRTRN------------PAC 187

Query: 289 AENWRNRIPTYFLMFGWRMVNTENRXYRNID 197
           +++W  +    FLMFGWR+ NTENR   N++
Sbjct: 188 SDSWSRQ--NKFLMFGWRLGNTENRNVNNLN 216


>ref|XP_004252645.1| PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48-like,
           partial [Solanum lycopersicum]
          Length = 825

 Score = 68.9 bits (167), Expect(2) = 4e-22
 Identities = 35/54 (64%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
 Frame = -1

Query: 203 YRCYSTDMKNGDRLRKFDFTKN-SSTSEGKSNPEGLVVKGDDRKARWPRFRHNP 45
           YRCYS D  NG++LRK DFT+N SS SE K    GLVVKG+ RKA+WPRFR  P
Sbjct: 215 YRCYSVDRMNGNKLRKLDFTRNESSQSEDKLRSVGLVVKGE-RKAKWPRFRPKP 267



 Score = 61.2 bits (147), Expect(2) = 4e-22
 Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
 Frame = -2

Query: 370 DAKSRDVSRIYNFQRERYFSANVRNDIAENWRNRIPTY---------FLMFGWRMVNTEN 218
           D K  DV R Y+FQ+ R F  N+ +  AEN R R PT+         FLMFGWR+VN EN
Sbjct: 144 DTKFNDVPRSYSFQKARNFCTNISDVFAENCRTRNPTFSDSWSRQNKFLMFGWRLVNIEN 203

Query: 217 RXYRNID 197
           R   N++
Sbjct: 204 RNVNNLN 210


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