BLASTX nr result
ID: Atropa21_contig00039288
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00039288
(712 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006605005.1| PREDICTED: uncharacterized protein LOC102669... 57 4e-12
ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578... 64 1e-11
ref|XP_004250583.1| PREDICTED: uncharacterized protein LOC101261... 50 3e-11
ref|XP_006584407.1| PREDICTED: uncharacterized protein LOC102670... 59 7e-11
gb|AEJ07955.1| putative polyprotein [Sorghum propinquum] 49 1e-10
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp... 56 2e-09
ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773... 49 3e-09
ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777... 45 5e-09
gb|AAC28209.1| contains similarity to reverse transcriptases [Ar... 49 4e-08
ref|XP_004963982.1| PREDICTED: uncharacterized protein LOC101777... 45 7e-08
ref|XP_004231642.1| PREDICTED: uncharacterized protein LOC101267... 57 2e-07
gb|ABA99152.1| retrotransposon protein, putative, unclassified [... 48 2e-06
gb|AAU10819.1| putative polyprotein [Oryza sativa Japonica Group... 47 3e-06
gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja... 43 3e-06
gb|AAN34944.1| Putative retroelement [Oryza sativa Japonica Group] 43 3e-06
gb|ABB47203.2| retrotransposon protein, putative, unclassified [... 43 3e-06
>ref|XP_006605005.1| PREDICTED: uncharacterized protein LOC102669234 [Glycine max]
Length = 922
Score = 57.4 bits (137), Expect(2) = 4e-12
Identities = 32/85 (37%), Positives = 41/85 (48%)
Frame = +3
Query: 333 YMDTSAIXXXXXXXXXXXXXXXXXTPLSIMIENGHRIPIQGVVHTLTXXXXXXFSLQNIL 512
YMDT A I++ NG IPI G T +L+N+L
Sbjct: 307 YMDTGATSHMTSTSGNLTSYFNMSNHRGIIVGNGQSIPIHGYSQTNLPSPHPPLALKNVL 366
Query: 513 YASNIIKNLISVRKFATDNSVFLNF 587
+A +IKNL+SVRKF TDNSV + F
Sbjct: 367 HAPKLIKNLVSVRKFTTDNSVTVEF 391
Score = 40.4 bits (93), Expect(2) = 4e-12
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFYPFLSSSTANVNPPT 706
F FGFF+ D +TG L RC S+G YP S+T + T
Sbjct: 391 FDPFGFFVKDFQTGMPLMRCESQGALYPITESTTPATSSST 431
>ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578284 [Solanum tuberosum]
Length = 614
Score = 63.5 bits (153), Expect(2) = 1e-11
Identities = 34/96 (35%), Positives = 45/96 (46%)
Frame = +3
Query: 300 TMNLQQLDGACYMDTSAIXXXXXXXXXXXXXXXXXTPLSIMIENGHRIPIQGVVHTLTXX 479
T+ + D YMDT A IM+ NG IPI G HT
Sbjct: 370 TLGITPPDANWYMDTGATSHMTSAQGNLTSYFNISNKCGIMVGNGQPIPIHGYGHTKLSF 429
Query: 480 XXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
L N+L+A +++KNL+S+RKF TDNSV + F
Sbjct: 430 PCPPLQLNNVLHAPHLVKNLVSIRKFTTDNSVSVEF 465
Score = 32.3 bits (72), Expect(2) = 1e-11
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFYP 667
F FGF + D +TG+ + RC S G YP
Sbjct: 465 FDPFGFPVKDFQTGRPVMRCESRGKLYP 492
>ref|XP_004250583.1| PREDICTED: uncharacterized protein LOC101261089 [Solanum
lycopersicum]
Length = 1140
Score = 50.4 bits (119), Expect(2) = 3e-11
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +3
Query: 414 SIMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
+I + NG +IPI+G H L+N+L+ IIKNLISVRKF TDN V + F
Sbjct: 374 AITVGNGSKIPIKGYGHECLNQNT--LQLKNVLHVPKIIKNLISVRKFTTDNHVSVEF 429
Score = 44.3 bits (103), Expect(2) = 3e-11
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFYPFLS 676
F FGF + DL+TG + RCNS GD YPFL+
Sbjct: 429 FDPFGFSVKDLQTGSKIVRCNSSGDLYPFLT 459
>ref|XP_006584407.1| PREDICTED: uncharacterized protein LOC102670170 [Glycine max]
Length = 466
Score = 58.9 bits (141), Expect(2) = 7e-11
Identities = 36/96 (37%), Positives = 45/96 (46%)
Frame = +3
Query: 300 TMNLQQLDGACYMDTSAIXXXXXXXXXXXXXXXXXTPLSIMIENGHRIPIQGVVHTLTXX 479
T+N+ D YMDT A I I NG IPI+G
Sbjct: 39 TLNITSPDPNWYMDTGATSHMMSTSGNLTSYFNMNNHRGITIGNGQSIPIRGYGQINLPS 98
Query: 480 XXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
+L+N L+AS +IKNL+SVRKF TDNSV + F
Sbjct: 99 PHPPLALKNSLHASKLIKNLVSVRKFTTDNSVTVEF 134
Score = 34.7 bits (78), Expect(2) = 7e-11
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFYPFLSSSTANVNPPT 706
F FGFF+ D +TG L RC S P + S+T + T
Sbjct: 134 FDSFGFFVKDFQTGMPLMRCESRDVLNPIIESTTPATSSST 174
>gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]
Length = 826
Score = 49.3 bits (116), Expect(2) = 1e-10
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3
Query: 405 TPLSIMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLN 584
TP SI++ NG +P+ + + L +L + +IIKNLIS+R+F TDN+ F+
Sbjct: 489 TPSSIIVGNGALLPVTTIGSRIFSFPHRNLVLNKVLVSPHIIKNLISIRRFTTDNNCFIE 548
Query: 585 F 587
F
Sbjct: 549 F 549
Score = 43.1 bits (100), Expect(2) = 1e-10
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 572 CIP*FHLFGFFITDLRTGKLLTRCNSEGDFYPFL---SSSTANVNPPTSL 712
C F FG + DL+T ++ RCNS GD YPF +S+TA + P SL
Sbjct: 545 CFIEFDPFGLSVKDLQTRNVIARCNSSGDLYPFFPPATSATALLAAPASL 594
>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
Length = 1296
Score = 55.8 bits (133), Expect(2) = 2e-09
Identities = 32/96 (33%), Positives = 45/96 (46%)
Frame = +3
Query: 300 TMNLQQLDGACYMDTSAIXXXXXXXXXXXXXXXXXTPLSIMIENGHRIPIQGVVHTLTXX 479
TM LQ+ D YMD++A T + + NG P++ + H
Sbjct: 352 TMTLQEPDPNWYMDSAATSHITSNIGNLQSTFNTSTMPLVTVGNGSLAPVETIGHGTLSY 411
Query: 480 XXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
FSL+N+L I+KNL+SVRKF TDN + F
Sbjct: 412 PSRSFSLRNVLVCPAIVKNLVSVRKFVTDNWCTIEF 447
Score = 32.7 bits (73), Expect(2) = 2e-09
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 569 FCIP*FHLFGFFITDLRTGKLLTRCNSEGDFYPFLSSS 682
+C F FGF + DL+T L RC+S G Y SS
Sbjct: 442 WCTIEFDPFGFSVKDLKTRNKLLRCDSSGPLYSVTPSS 479
>ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773259 [Setaria italica]
Length = 1950
Score = 48.5 bits (114), Expect(2) = 3e-09
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +3
Query: 414 SIMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
SI + NG IP+ H++ F+L NIL A +I++NL+SVR+F DNS F
Sbjct: 1023 SITVGNGTTIPVTSRGHSVLPTPTTNFALNNILVAPSIVRNLLSVRQFTRDNSCSFEF 1080
Score = 39.3 bits (90), Expect(2) = 3e-09
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFY 664
F GF + DLRTG+++ RCNS+GD Y
Sbjct: 1080 FDAHGFSVKDLRTGRVILRCNSDGDLY 1106
>ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777861 [Setaria italica]
Length = 2179
Score = 45.4 bits (106), Expect(2) = 5e-09
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +3
Query: 405 TPLSIMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLN 584
+P SI++ NG +P+ + L N+L + NIIKNLISVR+F DN+ +
Sbjct: 463 SPSSIIVCNGASLPVTSIGSHSFPTTRRPLVLSNVLVSPNIIKNLISVRRFTIDNNCSIE 522
Query: 585 F 587
F
Sbjct: 523 F 523
Score = 41.6 bits (96), Expect(2) = 5e-09
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFYPFL---SSSTANVNPPTS 709
F FG + DL+T ++ RCNS GD YPF SS+TA + TS
Sbjct: 523 FDPFGLSVKDLQTRSVIARCNSTGDLYPFFPAPSSTTAALTTATS 567
>gb|AAC28209.1| contains similarity to reverse transcriptases [Arabidopsis
thaliana] gi|7267168|emb|CAB77880.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 467
Score = 48.9 bits (115), Expect(2) = 4e-08
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +3
Query: 321 DGACYMDTSAIXXXXXXXXXXXXXXXXXTPLSIMIENGHRIPIQGVVHTLTXXXXXXFSL 500
D + YMDT A + S+++ NG +P + + ++ L
Sbjct: 297 DASWYMDTGATTHLTAQPGTLHSLFNSSSSPSVVVGNGSSVPTKAIGYSFLPSKIRPLHL 356
Query: 501 QNILYASNIIKNLISVRKFATDNSVFLNF 587
N+L +IIKNL+SVR+F DN V + F
Sbjct: 357 HNVLVCPSIIKNLVSVRQFTKDNYVSVEF 385
Score = 35.0 bits (79), Expect(2) = 4e-08
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFYPFLS---SSTANVNPP 703
F FGF I D T L RCNS+G Y S SS+++ +PP
Sbjct: 385 FDPFGFSIKDFNTWTNLLRCNSDGPLYSITSPPLSSSSSSSPP 427
>ref|XP_004963982.1| PREDICTED: uncharacterized protein LOC101777276 [Setaria italica]
Length = 1188
Score = 45.4 bits (106), Expect(2) = 7e-08
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = +3
Query: 408 PLSIMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
P SI++ NG P+ V + L N+L A IIKNLISVR+F DN+ + F
Sbjct: 393 PSSIIVGNGASFPVTSVGSSSFVTPRRSLVLSNVLVAPGIIKNLISVRRFTIDNNCSIEF 452
Score = 37.7 bits (86), Expect(2) = 7e-08
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFYPFL---SSSTANVNPPTS 709
F FG + DL+T ++ RCNS GD YPF ++ST + TS
Sbjct: 452 FDPFGLSMKDLQTRSVIARCNSSGDLYPFFVAPATSTTALAATTS 496
>ref|XP_004231642.1| PREDICTED: uncharacterized protein LOC101267661 [Solanum
lycopersicum]
Length = 693
Score = 56.6 bits (135), Expect(2) = 2e-07
Identities = 29/58 (50%), Positives = 36/58 (62%)
Frame = +3
Query: 414 SIMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
+I++ NGH+IPI HT SL N+ +A IIKNLISVRKF DNSV + F
Sbjct: 290 NIVVGNGHKIPILHYGHTCLPSYNPTLSLYNVFHAPKIIKNLISVRKFTIDNSVTVAF 347
Score = 25.4 bits (54), Expect(2) = 2e-07
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTR 640
F FGF I D +TGK +TR
Sbjct: 347 FDPFGFSIKDFQTGKQITR 365
>gb|ABA99152.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 989
Score = 48.1 bits (113), Expect(2) = 2e-06
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +3
Query: 405 TPLSIMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLN 584
TP SI++ NG +PI T T SL N+L + +IKNLISVR+F TDN+ +
Sbjct: 195 TPSSIVVGNGSLLPI-----TATGTTTLTDSLNNVLVSPRLIKNLISVRQFTTDNNCAVE 249
Query: 585 F 587
F
Sbjct: 250 F 250
Score = 30.4 bits (67), Expect(2) = 2e-06
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 572 CIP*FHLFGFFITDLRTGKLLTRCNSEGDFYPFLSSSTA 688
C F G + DL + K++ RCNS G YP S A
Sbjct: 246 CAVEFDPAGCSVKDLESQKVIIRCNSSGPLYPLHLPSAA 284
>gb|AAU10819.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53981353|gb|AAV24907.1| hypothetical protein [Oryza
sativa Japonica Group]
Length = 1679
Score = 47.4 bits (111), Expect(2) = 3e-06
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +3
Query: 405 TPLSIMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLN 584
+P I++ NG IP+ + H+ F+L++IL + IIKNLISVR+F DN +
Sbjct: 587 SPSHIVVGNGSTIPVTSIGHSKICHPNCSFTLRDILCSPAIIKNLISVRRFVIDNWCSVE 646
Query: 585 F 587
F
Sbjct: 647 F 647
Score = 30.4 bits (67), Expect(2) = 3e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 569 FCIP*FHLFGFFITDLRTGKLLTRCNSEGDFY 664
+C F FGF + DLRT ++ R NS G Y
Sbjct: 642 WCSVEFDPFGFSVKDLRTRTVIARFNSSGPLY 673
>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
Length = 1250
Score = 43.1 bits (100), Expect(2) = 3e-06
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 417 IMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
I + NGH IP+ + F L+NIL A ++++NL+S+R+F DN+ + F
Sbjct: 387 ITVGNGHTIPVICHGTSFLPIGTTKFDLKNILVAPSLVRNLLSIRQFTRDNNCSIEF 443
Score = 34.7 bits (78), Expect(2) = 3e-06
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFY 664
F FGF + LRT +++ RCNS GD Y
Sbjct: 443 FDEFGFSVKGLRTRRVILRCNSRGDLY 469
>gb|AAN34944.1| Putative retroelement [Oryza sativa Japonica Group]
Length = 1146
Score = 43.1 bits (100), Expect(2) = 3e-06
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 417 IMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
I + NGH IP+ + F L+NIL A ++++NL+S+R+F DN+ + F
Sbjct: 406 ITVGNGHTIPVICHGTSFLPIGTTKFDLKNILVAPSLVRNLLSIRQFTRDNNCSIEF 462
Score = 34.7 bits (78), Expect(2) = 3e-06
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFY 664
F FGF + LRT +++ RCNS GD Y
Sbjct: 462 FDEFGFSVKGLRTRRVILRCNSRGDLY 488
>gb|ABB47203.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1050
Score = 43.1 bits (100), Expect(2) = 3e-06
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 417 IMIENGHRIPIQGVVHTLTXXXXXXFSLQNILYASNIIKNLISVRKFATDNSVFLNF 587
I + NGH IP+ + F L+NIL A ++++NL+S+R+F DN+ + F
Sbjct: 310 ITVGNGHTIPVICHGTSFLPIGTTKFDLKNILVAPSLVRNLLSIRQFTRDNNCSIEF 366
Score = 34.7 bits (78), Expect(2) = 3e-06
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 584 FHLFGFFITDLRTGKLLTRCNSEGDFY 664
F FGF + LRT +++ RCNS GD Y
Sbjct: 366 FDEFGFSVKGLRTRRVILRCNSRGDLY 392