BLASTX nr result

ID: Atropa21_contig00038407 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00038407
         (543 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006343061.1| PREDICTED: uncharacterized protein LOC102585...   123   3e-26
ref|XP_004242214.1| PREDICTED: putative ATP-dependent RNA helica...    89   9e-16
ref|XP_006356158.1| PREDICTED: uncharacterized protein LOC102579...    78   2e-12

>ref|XP_006343061.1| PREDICTED: uncharacterized protein LOC102585680 [Solanum tuberosum]
          Length = 229

 Score =  123 bits (308), Expect = 3e-26
 Identities = 58/72 (80%), Positives = 63/72 (87%)
 Frame = -2

Query: 218 EPQMLLKKTIQKTKNFLHKTPHNLKSFLFGGHHKLRKAAHQFNPFFSVSKRVSCSKRISK 39
           EPQMLLKK IQKTKNFL+KTPHNLKSFLFGGHHKL K A  FNPF SVSKR S SKRI K
Sbjct: 9   EPQMLLKKAIQKTKNFLYKTPHNLKSFLFGGHHKLPKTARHFNPFLSVSKRFSSSKRIPK 68

Query: 38  STIQEIDDLYRD 3
           +T++E+DDLYRD
Sbjct: 69  TTVKELDDLYRD 80


>ref|XP_004242214.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein
            8-like [Solanum lycopersicum]
          Length = 1100

 Score = 88.6 bits (218), Expect = 9e-16
 Identities = 51/93 (54%), Positives = 59/93 (63%), Gaps = 6/93 (6%)
 Frame = -2

Query: 263  IAVSLAAQIRENKME------EPQMLLKKTIQKTKNFLHKTPHNLKSFLFGGHHKLRKAA 102
            +A+S+A +I ++K        +PQMLLKKT QKTKN   KT HNL SFLF  HHKL K  
Sbjct: 904  VALSVAKKIEKDKSHMGMLYRKPQMLLKKTFQKTKNLFFKTLHNLNSFLFKSHHKLPKVC 963

Query: 101  HQFNPFFSVSKRVSCSKRISKSTIQEIDDLYRD 3
            H FNPFF      S S RI  S IQE+DD YRD
Sbjct: 964  H-FNPFF------SRSNRIPNSIIQELDDYYRD 989


>ref|XP_006356158.1| PREDICTED: uncharacterized protein LOC102579339 [Solanum tuberosum]
          Length = 173

 Score = 77.8 bits (190), Expect = 2e-12
 Identities = 43/69 (62%), Positives = 44/69 (63%)
 Frame = -2

Query: 209 MLLKKTIQKTKNFLHKTPHNLKSFLFGGHHKLRKAAHQFNPFFSVSKRVSCSKRISKSTI 30
           ML KKT QKTKN   KT HNL SFLF  HHKL K  H FNPFF      S S RI  S I
Sbjct: 1   MLFKKTFQKTKNLFLKTLHNLNSFLFKSHHKLPKVCH-FNPFF------SRSNRIPNSII 53

Query: 29  QEIDDLYRD 3
           QE+DD YRD
Sbjct: 54  QELDDFYRD 62


Top