BLASTX nr result
ID: Atropa21_contig00038266
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00038266
(717 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT39281.2| Integrase core domain containing protein [Solanum... 130 1e-38
emb|CBI21397.3| unnamed protein product [Vitis vinifera] 135 7e-38
emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera] 155 1e-35
emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera] 107 2e-32
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera] 141 2e-31
emb|CAN70473.1| hypothetical protein VITISV_037490 [Vitis vinifera] 81 9e-31
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 109 1e-30
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha... 138 2e-30
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 102 4e-30
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 103 1e-29
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana] 133 5e-29
dbj|BAA78427.1| polyprotein [Arabidopsis thaliana] 133 5e-29
dbj|BAM44531.1| polyprotein [Arabidopsis thaliana] 133 5e-29
dbj|BAM44530.1| polyprotein [Arabidopsis thaliana] 133 5e-29
dbj|BAM44529.1| polyprotein [Arabidopsis thaliana] 133 5e-29
dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana] 133 5e-29
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [... 99 6e-29
dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|... 133 7e-29
dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana] 133 7e-29
dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|... 133 7e-29
>gb|AAT39281.2| Integrase core domain containing protein [Solanum demissum]
Length = 1760
Score = 130 bits (327), Expect(2) = 1e-38
Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Frame = -2
Query: 677 CVPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLP-NSSPP 501
C +IK+NL+ V KFC+ N+ SIEFF + VKDL+T + +G+N+D +Y P S+
Sbjct: 370 CSHSIKNNLLSVSKFCRDNHTSIEFFPFSYCVKDLSTGAPLFRGQNRDGLYEWPLGSAHH 429
Query: 500 TFHSTIKVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLPFS 321
T + VP+ WHR LGHP+ R L+ +I SC NK+HRLPFS
Sbjct: 430 TPQCNVVVPLHLWHRRLGHPNHRTLN-MIFHQFSLPVSHSRTASICNSCYSNKMHRLPFS 488
Query: 320 QSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMAL 183
+++L+S PL+++++D+W P+PV SID +YY +FV YS YM L
Sbjct: 489 ENSLQSQRPLQIIYTDLWGPSPVLSIDNKRYYALFVDQYS-KYMCL 533
Score = 56.6 bits (135), Expect(2) = 1e-38
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
KY+ L+ +K K +V ++F L+E+ F I +L+TDGG + L + GI L
Sbjct: 529 KYMCLFTIKSKKEVLDVFQALHPLLERRFQTKIMSLYTDGGGEFQGLSSYLKIQGIEHLV 588
Query: 19 SPPYTP 2
+PPYTP
Sbjct: 589 TPPYTP 594
>emb|CBI21397.3| unnamed protein product [Vitis vinifera]
Length = 390
Score = 135 bits (340), Expect(2) = 7e-38
Identities = 71/173 (41%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Frame = -2
Query: 707 PQTHYTFTMSCVPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDV 528
P + + CVP++K NLIYV +F TNNVSIEFF + F +KDL T +L +KD V
Sbjct: 22 PHSFLLHDVFCVPSMKHNLIYVSQFFLTNNVSIEFFPRSFLMKDLRTGATLLIDNSKDGV 81
Query: 527 Y----VLPNSSPPTFHSTIKVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXX 360
Y + S P ++IK +WH HLGHPS ++L H++ +
Sbjct: 82 YKWLTIHEKSKPLLIFASIKASTSNWHHHLGHPSTKVLSHLMSSQLIHLSFTSIRNFSYN 141
Query: 359 SCACNKIHRLPFSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS 201
SC CNK H+L F S+ S+S L+LL+SDVW +PV+S + KYY+IF+ H++
Sbjct: 142 SCHCNKSHKLHFFASSPTSTSSLQLLYSDVWC-SPVESFNDNKYYVIFIDHFT 193
Score = 48.9 bits (115), Expect(2) = 7e-38
Identities = 28/66 (42%), Positives = 36/66 (54%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
KYIW Y DV ++F FK LVEK F + I L+T+ L L F A HG+S T
Sbjct: 194 KYIWFY---LNYDVLDIFIHFKLLVEKKFNKQIIHLYTNNCEECLALNFFLAHHGVSHFT 250
Query: 19 SPPYTP 2
+ +TP
Sbjct: 251 THSHTP 256
>emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]
Length = 1427
Score = 155 bits (392), Expect = 1e-35
Identities = 83/192 (43%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Frame = -2
Query: 707 PQTHYTFTMS---CVPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENK 537
P T +F +S C P+IK NLI V KFCKTNN SIEFF F +KDL T + QG +K
Sbjct: 359 PATSKSFCLSNVLCXPSIKQNLISVSKFCKTNNTSIEFFPSSFVIKDLKTGARLTQGRSK 418
Query: 536 DDVYVLP--------NSSPPTFHSTIKVPVVDWHRHLGHPSDRILHHIICT-DXXXXXXX 384
DDVY P +SP ++K + +WH LGHPS RI +I +
Sbjct: 419 DDVYEWPWPNKGNTLGTSPKQACVSVKTSLANWHHRLGHPSSRIFQFLIRKHNLQIYPTE 478
Query: 383 XXXXXXXXSCACNKIHRLPFSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHY 204
SC CNK H+LPF S+LRS L+L++SDVW P+P++SIDGF+YYLIF+ ++
Sbjct: 479 SFHNFFCESCLCNKSHKLPFGVSSLRSRGXLDLVYSDVWGPSPIESIDGFRYYLIFIDYF 538
Query: 203 S*VYMALPVEEK 168
+ P+ K
Sbjct: 539 TKYVWLFPMAYK 550
Score = 87.4 bits (215), Expect = 4e-15
Identities = 37/66 (56%), Positives = 48/66 (72%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
KY+WL+P+ KSDV +FPK+KS+VEK+F + TL+TDGGT Y LK +F + GI
Sbjct: 540 KYVWLFPMAYKSDVYTIFPKYKSMVEKYFNASLVTLYTDGGTEYKSLKSYFISQGIQHQV 599
Query: 19 SPPYTP 2
SPPYTP
Sbjct: 600 SPPYTP 605
>emb|CAN82221.1| hypothetical protein VITISV_015226 [Vitis vinifera]
Length = 1007
Score = 107 bits (267), Expect(2) = 2e-32
Identities = 65/178 (36%), Positives = 92/178 (51%), Gaps = 17/178 (9%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNS---SP 504
VP I +NLI V +FC NN EF ++F VKD T+ ++LQG + +Y P SP
Sbjct: 92 VPDIATNLISVSQFCADNNTFFEFHPRFFFVKDQVTKKILLQGSLEHGLYRFPARFVPSP 151
Query: 503 PTF-------HSTIKVPVVD--WHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCA 351
F S I + + WH LGHP+D IL HI+ + CA
Sbjct: 152 TAFVSSSYDRSSNISLTTITTLWHSRLGHPADNILKHILTS----CNISHQCHKNNVCCA 207
Query: 350 CN--KIHRLPFSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFV---AHYS*VY 192
C K H+LPF+ S R+S P LL +D+W PT + S G +Y+++FV +H+S +Y
Sbjct: 208 CQFAKSHKLPFNVSVSRASHPFALLHADLWGPTSIPSTTGARYFILFVDDFSHFSWIY 265
Score = 58.5 bits (140), Expect(2) = 2e-32
Identities = 28/65 (43%), Positives = 35/65 (53%)
Frame = -3
Query: 196 YIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLTS 17
+ W+YPL K + F KFKSLVE F I+ L +D G + + ATHGI S
Sbjct: 261 FSWIYPLHSKDQALSXFIKFKSLVENQFNSRIQCLRSDNGGEFKAFSSYLATHGIKSQFS 320
Query: 16 PPYTP 2
PYTP
Sbjct: 321 CPYTP 325
>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
Length = 1172
Score = 141 bits (355), Expect = 2e-31
Identities = 73/169 (43%), Positives = 100/169 (59%)
Frame = -2
Query: 677 CVPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT 498
CVP +K NLI + K +NNVSI F F VKDL T +L+G+ KD VY SSP
Sbjct: 294 CVPGMKKNLISISKLXISNNVSITFLPSSFLVKDLRTGATLLKGKTKDGVYEWLVSSPLL 353
Query: 497 FHSTIKVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLPFSQ 318
S++K +WH LGHP+ IL H+I T+ +C CNK H+L FS
Sbjct: 354 AFSSVKTSSSEWHHRLGHPAFPILKHVISTNNLALSSSSLLHFSCNTCHCNKSHKLSFSN 413
Query: 317 STLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEE 171
ST+ SS PL++L+SDVW +P+ S DGFKYY+IFV +++ P+++
Sbjct: 414 STINSSRPLQILYSDVWT-SPIISYDGFKYYVIFVDYFTKYIWFYPLKQ 461
Score = 86.7 bits (213), Expect = 7e-15
Identities = 38/66 (57%), Positives = 49/66 (74%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
KYIW YPLK+ S V ++F +FK++VEKHF Q I TL++D G Y+ L F A HGIS LT
Sbjct: 452 KYIWFYPLKQISQVKDIFIRFKAIVEKHFNQNIHTLYSDNGGEYISLSNFLALHGISHLT 511
Query: 19 SPPYTP 2
+PP+TP
Sbjct: 512 TPPHTP 517
>emb|CAN70473.1| hypothetical protein VITISV_037490 [Vitis vinifera]
Length = 786
Score = 80.9 bits (198), Expect(2) = 9e-31
Identities = 34/66 (51%), Positives = 49/66 (74%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
KYIW Y ++KS+V ++F +FK++VE HF I TL++D G YL L+ F ATHGI+ L+
Sbjct: 249 KYIWFYSFQQKSEVKDVFIRFKAIVETHFQNKIHTLYSDNGGEYLALRTFLATHGITHLS 308
Query: 19 SPPYTP 2
+PP+TP
Sbjct: 309 TPPHTP 314
Score = 79.7 bits (195), Expect(2) = 9e-31
Identities = 43/103 (41%), Positives = 57/103 (55%)
Frame = -2
Query: 509 SPPTFHSTIKVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRL 330
+P S++K +WH LGHP IL HI+ C NK H+L
Sbjct: 147 APLVAFSSVKTSSFEWHHRLGHPVFPILKHIVSHYQLDLSSSLISDFLCNVCHYNKNHKL 206
Query: 329 PFSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS 201
PFS ST+ SS PLE++FSDVW + V S +GFK Y+IFV H++
Sbjct: 207 PFSTSTVVSSQPLEIIFSDVWT-SLVISHNGFKNYVIFVDHFT 248
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 109 bits (272), Expect(2) = 1e-30
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPTF 495
VP+ NLI V + N+V IEF S +F +KD T+ V+L G+ +D +Y LP
Sbjct: 385 VPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDLRL 444
Query: 494 ---HSTIKVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLPF 324
S+ +VP+ WH+ LGHPS I+H +I + +C K H+LP+
Sbjct: 445 KHNFSSTRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPY 504
Query: 323 SQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS 201
+ S +SS+PL L+FSDV+ P +DS +KYY+ F+ YS
Sbjct: 505 TISMSQSSAPLMLIFSDVFGPA-IDSFGRYKYYVSFIDDYS 544
Score = 50.8 bits (120), Expect(2) = 1e-30
Identities = 27/65 (41%), Positives = 36/65 (55%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
K+ W+Y L+ KSDV F +F+ LVE+ F + I +D G Y KL F T GI
Sbjct: 545 KFTWIYLLRHKSDVYKSFCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIGIHHQV 604
Query: 19 SPPYT 5
S P+T
Sbjct: 605 SCPHT 609
>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
gi|225898008|dbj|BAH30336.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1459
Score = 138 bits (348), Expect = 2e-30
Identities = 74/173 (42%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I+ NLI V + C TN VS+EFF F VKDLNT ++LQG KDD+Y P ++PP
Sbjct: 399 VPDIRKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDDLYEWPVTNPPAT 458
Query: 497 --FHS-TIKVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S + K + WH LGHPS IL+ ++ C NK H+LP
Sbjct: 459 ALFTSPSPKTTLSSWHSRLGHPSASILNTLLSKFSLPVSVASSNKTSCSDCLINKSHKLP 518
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
F+ S++ SSSPLE +F+DVW +P+ S D +KYYL+ V HY+ P+++K
Sbjct: 519 FATSSIHSSSPLEYIFTDVWT-SPIISHDNYKYYLVLVDHYTRYTWLYPLQQK 570
Score = 75.9 bits (185), Expect = 1e-11
Identities = 33/66 (50%), Positives = 47/66 (71%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPL++KS V F FK+LVE F I+TL++D G ++ L++F ++GIS LT
Sbjct: 560 RYTWLYPLQQKSQVKATFIAFKALVENRFQAKIRTLYSDNGGEFIALRDFLVSNGISHLT 619
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 620 SPPHTP 625
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 102 bits (253), Expect(2) = 4e-30
Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 2/172 (1%)
Frame = -2
Query: 710 PPQTHYTFTMSCVPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDD 531
P + Y + VP K NLI + N+ +E ++F++KD T+ +L+G +
Sbjct: 365 PTRNLYLRNILHVPRTKKNLISAHRLAVDNHAFVEVHPRFFAIKDQITKNTLLRGPCCNG 424
Query: 530 VYVLP--NSSPPTFHSTIKVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXS 357
+Y LP SS IK V WH LGHPS +I+ ++ + +
Sbjct: 425 LYPLPASTSSSKQVLGAIKPTVSIWHSRLGHPSWQIVQKVVSHNNLPCLGESKELGVCDA 484
Query: 356 CACNKIHRLPFSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS 201
C K H+LPF +ST S+ PLEL+FSDVW P P DS+ G KYY+ F+ +S
Sbjct: 485 CQKGKSHQLPFLKSTSASNFPLELVFSDVWGPAP-DSVGGRKYYVSFIDDFS 535
Score = 56.2 bits (134), Expect(2) = 4e-30
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
K+ W+Y LK+KS+V + F +F+ LVE+ F + I + TD G Y KL +FF GIS
Sbjct: 536 KFTWIYLLKQKSEVFHKFHEFQQLVERIFYRKIIAMQTDWGGEYEKLHDFFTKIGISHHV 595
Query: 19 SPPYT 5
S P+T
Sbjct: 596 SCPHT 600
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 103 bits (258), Expect(2) = 1e-29
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSP--- 504
VP NL+ + N+ +E +S+YF++KDL T+ ++ +G + +Y LP+SSP
Sbjct: 381 VPNANKNLVSANRLVSDNSAYMELYSKYFNLKDLATKKLLFRGPCRGRLYALPSSSPHER 440
Query: 503 ----PTFHSTIKVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIH 336
IK WH LGHP+ I+ +I + +C K H
Sbjct: 441 PRPLKEAFGAIKPSFERWHSRLGHPASPIVEKVISKNNLPCLAESNKQSVCDACQQGKSH 500
Query: 335 RLPFSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS 201
+LP+S+S+ SS PLEL++SDVW P + S+ G +YY+ F+ YS
Sbjct: 501 QLPYSRSSSMSSHPLELIYSDVWGPA-LTSVGGKQYYVSFIGDYS 544
Score = 52.8 bits (125), Expect(2) = 1e-29
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
K+ WLY +K KS+V F +F++LVE+ F + I + +D G Y KL FF GI+
Sbjct: 545 KFTWLYLIKHKSEVIQKFHEFQALVERLFNRKIIAMQSDWGGEYEKLHSFFTKIGITHHV 604
Query: 19 SPPYT 5
S P+T
Sbjct: 605 SCPHT 609
>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 133 bits (335), Expect = 5e-29
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I NLI V + C TN VS+EFF F VKDLNT V +LQG+ KD++Y P +S
Sbjct: 391 VPNINKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAV 450
Query: 497 --FHSTI-KVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S K WH LGHPS IL+ +I C NK H++P
Sbjct: 451 SMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 510
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
FS ST+ SS PLE ++SDVW+ +P+ SID ++YY+IFV H++ P+++K
Sbjct: 511 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 562
Score = 75.9 bits (185), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPLK+KS V + F FKSLVE F I TL++D G ++ L+++ + HGIS T
Sbjct: 552 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFT 611
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 612 SPPHTP 617
>dbj|BAA78427.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 133 bits (335), Expect = 5e-29
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I NLI V + C TN VS+EFF F VKDLNT V +LQG+ KD++Y P +S
Sbjct: 391 VPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAV 450
Query: 497 --FHSTI-KVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S K WH LGHPS IL+ +I C NK H++P
Sbjct: 451 SMFASPCSKATHCSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 510
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
FS ST+ SS PLE ++SDVW+ +P+ SID ++YY+IFV H++ P+++K
Sbjct: 511 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 562
Score = 75.9 bits (185), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPLK+KS V + F FKSLVE F I TL++D G ++ L+++ + HGIS T
Sbjct: 552 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFT 611
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 612 SPPHTP 617
>dbj|BAM44531.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 133 bits (335), Expect = 5e-29
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I NLI V + C TN VS+EFF F VKDLNT V +LQG+ KD++Y P +S
Sbjct: 391 VPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAV 450
Query: 497 --FHSTI-KVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S K WH LGHPS IL+ +I C NK H++P
Sbjct: 451 SMFASPCSKATHCSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 510
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
FS ST+ SS PLE ++SDVW+ +P+ SID ++YY+IFV H++ P+++K
Sbjct: 511 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 562
Score = 75.9 bits (185), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPLK+KS V + F FKSLVE F I TL++D G ++ L+++ + HGIS T
Sbjct: 552 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFT 611
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 612 SPPHTP 617
>dbj|BAM44530.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 133 bits (335), Expect = 5e-29
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I NLI V + C TN VS+EFF F VKDLNT V +LQG+ KD++Y P +S
Sbjct: 391 VPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAV 450
Query: 497 --FHSTI-KVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S K WH LGHPS IL+ +I C NK H++P
Sbjct: 451 SMFASPCSKATHCSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 510
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
FS ST+ SS PLE ++SDVW+ +P+ SID ++YY+IFV H++ P+++K
Sbjct: 511 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 562
Score = 75.9 bits (185), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPLK+KS V + F FKSLVE F I TL++D G ++ L+++ + HGIS T
Sbjct: 552 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFT 611
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 612 SPPHTP 617
>dbj|BAM44529.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 133 bits (335), Expect = 5e-29
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I NLI V + C TN VS+EFF F VKDLNT V +LQG+ KD++Y P +S
Sbjct: 391 VPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAV 450
Query: 497 --FHSTI-KVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S K WH LGHPS IL+ +I C NK H++P
Sbjct: 451 SMFASPCSKATHCSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 510
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
FS ST+ SS PLE ++SDVW+ +P+ SID ++YY+IFV H++ P+++K
Sbjct: 511 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 562
Score = 75.9 bits (185), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPLK+KS V + F FKSLVE F I TL++D G ++ L+++ + HGIS T
Sbjct: 552 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGKFVVLRDYLSQHGISHFT 611
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 612 SPPHTP 617
>dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 133 bits (335), Expect = 5e-29
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I NLI V + C TN VS+EFF F VKDLNT V +LQG+ KD++Y P +S
Sbjct: 391 VPNINKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAV 450
Query: 497 --FHSTI-KVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S K WH LGHPS IL+ +I C NK H++P
Sbjct: 451 SMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 510
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
FS ST+ SS PLE ++SDVW+ +P+ SID ++YY+IFV H++ P+++K
Sbjct: 511 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 562
Score = 75.9 bits (185), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPLK+KS V + F FKSLVE F I TL++D G ++ L+++ + HGIS T
Sbjct: 552 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFT 611
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 612 SPPHTP 617
>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
Japonica Group] gi|31431217|gb|AAP53032.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1042
Score = 99.4 bits (246), Expect(2) = 6e-29
Identities = 55/157 (35%), Positives = 79/157 (50%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPTF 495
VP NLI K N+V +E S+YF +KD TR VL+G + +Y LP++S
Sbjct: 281 VPQAAKNLISATKLASDNSVFVEIHSKYFLIKDRTTRSTVLKGPRRHGLYPLPSTSSTKQ 340
Query: 494 HSTIKVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLPFSQS 315
+ + WH LGHPS I+ +I ++ +C K H+LP+S S
Sbjct: 341 AFAVAPSLERWHSRLGHPSIPIVMKVISSNKLPCLRESNKESVCDACQKAKSHQLPYSNS 400
Query: 314 TLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHY 204
S+ PLEL++SDVW P S G K+Y+ F+ Y
Sbjct: 401 MSVSNKPLELIYSDVWGPAST-SFGGKKFYVSFIDSY 436
Score = 55.1 bits (131), Expect(2) = 6e-29
Identities = 30/65 (46%), Positives = 37/65 (56%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
K+ W+Y LK KSDV F F+ LVE+ F + I + TD G Y KL FF GIS
Sbjct: 438 KFSWIYFLKHKSDVFEKFHDFQQLVERLFDRKIIAMQTDWGGEYQKLNSFFEKIGISHHV 497
Query: 19 SPPYT 5
S P+T
Sbjct: 498 SCPHT 502
>dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] gi|404433798|dbj|BAM44533.1|
polyprotein [Arabidopsis thaliana]
Length = 1330
Score = 133 bits (334), Expect = 7e-29
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I NLI V + C TN VS+EFF F VKDLNT V +LQG+ KD++Y P +S
Sbjct: 246 VPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAV 305
Query: 497 --FHSTI-KVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S K WH LGHPS IL+ +I C NK H++P
Sbjct: 306 SMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 365
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
FS ST+ SS PLE ++SDVW+ +P+ SID ++YY+IFV H++ P+++K
Sbjct: 366 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 417
Score = 75.9 bits (185), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPLK+KS V + F FKSLVE F I TL++D G ++ L+++ + HGIS T
Sbjct: 407 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFT 466
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 467 SPPHTP 472
>dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 133 bits (334), Expect = 7e-29
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I NLI V + C TN VS+EFF F VKDLNT V +LQG+ KD++Y P +S
Sbjct: 391 VPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAV 450
Query: 497 --FHSTI-KVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S K WH LGHPS IL+ +I C NK H++P
Sbjct: 451 SMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 510
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
FS ST+ SS PLE ++SDVW+ +P+ SID ++YY+IFV H++ P+++K
Sbjct: 511 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 562
Score = 75.9 bits (185), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPLK+KS V + F FKSLVE F I TL++D G ++ L+++ + HGIS T
Sbjct: 552 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFT 611
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 612 SPPHTP 617
>dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] gi|403406144|dbj|BAM42648.1|
polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 133 bits (334), Expect = 7e-29
Identities = 74/173 (42%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Frame = -2
Query: 674 VPTIKSNLIYVGKFCKTNNVSIEFFSQYFSVKDLNTRVVVLQGENKDDVYVLPNSSPPT- 498
VP I NLI V + C TN VS+EFF F VKDLNT V +LQG+ KD++Y P +S
Sbjct: 391 VPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAV 450
Query: 497 --FHSTI-KVPVVDWHRHLGHPSDRILHHIICTDXXXXXXXXXXXXXXXSCACNKIHRLP 327
F S K WH LGHPS IL+ +I C NK H++P
Sbjct: 451 SMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVP 510
Query: 326 FSQSTLRSSSPLELLFSDVWAPTPVDSIDGFKYYLIFVAHYS*VYMALPVEEK 168
FS ST+ SS PLE ++SDVW+ +P+ SID ++YY+IFV H++ P+++K
Sbjct: 511 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 562
Score = 75.9 bits (185), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = -3
Query: 199 KYIWLYPLKRKSDVTNLFPKFKSLVEKHFAQPIKTLFTDGGTAYLKLKEFFATHGISQLT 20
+Y WLYPLK+KS V + F FKSLVE F I TL++D G ++ L+++ + HGIS T
Sbjct: 552 RYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFT 611
Query: 19 SPPYTP 2
SPP+TP
Sbjct: 612 SPPHTP 617