BLASTX nr result
ID: Atropa21_contig00038252
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00038252
(572 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 242 6e-62
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope... 237 1e-60
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 84 2e-14
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 84 2e-14
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 82 1e-13
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 81 2e-13
ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu... 81 2e-13
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 81 2e-13
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus... 80 4e-13
gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative... 77 2e-12
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative... 77 2e-12
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 76 3e-12
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 76 3e-12
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera] 75 1e-11
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps... 75 2e-11
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 74 2e-11
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 73 2e-11
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 70 3e-10
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 70 3e-10
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 70 3e-10
>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1 [Solanum lycopersicum]
Length = 1632
Score = 242 bits (617), Expect = 6e-62
Identities = 132/227 (58%), Positives = 153/227 (67%), Gaps = 44/227 (19%)
Frame = +3
Query: 3 DARDVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRV 182
D RDVYSFLHLVR++SAQEVEGT CLGAE+DELEEDEDMGLYLSPNRDSGS+MP FEDR
Sbjct: 1245 DTRDVYSFLHLVRNTSAQEVEGTSCLGAEIDELEEDEDMGLYLSPNRDSGSEMPTFEDRA 1304
Query: 183 EFDYNENLDEGNLSGSAWEKAS--SEKCSGSWDVAGKTQNGAEKGVNQSDSWSAWGKKVD 356
EFDYNENLDEG SGSAWEKAS S K GSWD+AGKTQNGAE+GVNQSDSWSAWGKKVD
Sbjct: 1305 EFDYNENLDEGKPSGSAWEKASSGSVKSGGSWDMAGKTQNGAEEGVNQSDSWSAWGKKVD 1364
Query: 357 EAVSD---PGNGEQSGSWSAWGEKAKE------------ADSNPQQSGVGEQSGSAVSMG 491
E ++ G+GEQSGSWS+WG+K ++ ++S+ ++ G GSA + G
Sbjct: 1365 EPENNRQQSGSGEQSGSWSSWGKKVEKDGGSWDEPKQLNSESSWGKAPNGGGLGSATAEG 1424
Query: 492 EK-------------------------IGKRWW--FFLGAKG*KRWW 551
K + K+WW FF KRWW
Sbjct: 1425 NKRLDQSVNDWSSSVSRDGQKXTNTXXLYKKWWLEFF------KRWW 1465
>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1127
Score = 237 bits (605), Expect = 1e-60
Identities = 129/219 (58%), Positives = 150/219 (68%), Gaps = 36/219 (16%)
Frame = +3
Query: 3 DARDVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRV 182
D RDVYSFLHLVR++SAQEVEGT CLGAE+DELEEDEDMGLYLSPNRDSGS+MP FEDR
Sbjct: 796 DTRDVYSFLHLVRNTSAQEVEGTSCLGAEIDELEEDEDMGLYLSPNRDSGSEMPTFEDRA 855
Query: 183 EFDYNENLDEGNLSGSAWEKAS--SEKCSGSWDVAGKTQNGAEKGVNQSDSWSAWGKKVD 356
EFDYNENLDEG SGSAWE+AS S K GSWD+AGKTQNGAE+GVNQSDSWS+WGKKVD
Sbjct: 856 EFDYNENLDEGKPSGSAWEEASSGSVKSGGSWDMAGKTQNGAEEGVNQSDSWSSWGKKVD 915
Query: 357 EAVSD---PGNGEQSGSWSAWGEKAKE------------ADSNPQQSGVGEQSGSAVSMG 491
E ++ G+GEQSGSWS WG + K+ ++S+ ++ G GSA + G
Sbjct: 916 EPENNRQQSGSGEQSGSWSPWGRRWKKMVVLGDEPKQLNSESSWGKAPNGGGLGSATAEG 975
Query: 492 EK-----------------IGKRWW--FFLGAKG*KRWW 551
+ K+WW FF KRWW
Sbjct: 976 NRRLDQSVNDWSSSVSRDGQYKKWWLEFF------KRWW 1008
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 84.3 bits (207), Expect = 2e-14
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 10/156 (6%)
Frame = +3
Query: 3 DARDVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMG-LYLSPNRDSGSDMPIFEDR 179
D DVY+FLH+VRS ++E + CLG E++++ +++ G L LSP S S+ P+FED
Sbjct: 1240 DVVDVYNFLHMVRSGKSEEPT-SACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDS 1298
Query: 180 VEFDYNENLDEGNLSGSAWEKASS----EKCSGSWDVAGKTQNGAEKGVNQSDSWSAWGK 347
EF++ + G S WEKA S G W+ +NG + + WS WG+
Sbjct: 1299 AEFEHCLDNYPGE---SKWEKAPSLGAVSTGGGQWE---SNENGKATNSSDGNDWSGWGR 1352
Query: 348 KV--DEAVSDPGNGEQSGSW---SAWGEKAKEADSN 440
K D V++ + +W S+WG KA + ++
Sbjct: 1353 KAEPDVTVTNAQENTSNSAWDTTSSWGNKATNSSND 1388
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 84.3 bits (207), Expect = 2e-14
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 10/156 (6%)
Frame = +3
Query: 3 DARDVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMG-LYLSPNRDSGSDMPIFEDR 179
D DVY+FLH+VRS ++E + CLG E++++ +++ G L LSP S S+ P+FED
Sbjct: 1300 DVVDVYNFLHMVRSGKSEEPT-SACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDS 1358
Query: 180 VEFDYNENLDEGNLSGSAWEKASS----EKCSGSWDVAGKTQNGAEKGVNQSDSWSAWGK 347
EF++ + G S WEKA S G W+ +NG + + WS WG+
Sbjct: 1359 AEFEHCLDNYPGE---SKWEKAPSLGAVSTGGGQWE---SNENGKATNSSDGNDWSGWGR 1412
Query: 348 KV--DEAVSDPGNGEQSGSW---SAWGEKAKEADSN 440
K D V++ + +W S+WG KA + ++
Sbjct: 1413 KAEPDVTVTNAQENTSNSAWDTTSSWGNKATNSSND 1448
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 81.6 bits (200), Expect = 1e-13
Identities = 60/156 (38%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDELE-EDEDMGLYLSPNRDSGSDMPIFEDRVEF 188
DVYSFL++VRS++ E T CLGAEVD+L EDED LSP +S SD P FED EF
Sbjct: 1249 DVYSFLNMVRSTAGGEESVTACLGAEVDDLMLEDEDWN--LSPEHNSSSDKPTFEDSAEF 1306
Query: 189 DYNENLDEGNLSGSAWEKASS----EKCSGSWDVAGKT-----------QNGAEKGVNQS 323
++ + S WEK SS + SG+WDV N AE S
Sbjct: 1307 ---QDFLGNQPAESNWEKISSLKDRSRSSGNWDVDKNDGAVKEKPWSLGMNTAEANDVAS 1363
Query: 324 DSW-SAWGKKVDEAVSDPGNGEQSGSWSAWGEKAKE 428
W +A + + + + N QS S+S W K E
Sbjct: 1364 SGWDTAAARTTNNSWNSENNVAQSNSFSGWATKKPE 1399
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 81.3 bits (199), Expect = 2e-13
Identities = 67/198 (33%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Frame = +3
Query: 3 DARDVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRV 182
D DVY FLH+VRSS+ E TGCLG EVD LE++ D LSP + SD P+FED V
Sbjct: 1243 DGVDVYDFLHMVRSSTGIEESDTGCLGEEVDGLEDEFDWS--LSPEHNLCSDKPVFEDLV 1300
Query: 183 E-----------FDYNENLDEGNLSGSAWEK--ASSEKCSGSWDVAG----KTQNGAEKG 311
E +++ D S WEK S EK S W G + + EK
Sbjct: 1301 EDQSWLENKQENANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKA 1360
Query: 312 VNQSDSWSAWGKKVDEAVSDPGNGEQSG-----SWSAWGEKA---KEADSNPQQSGVGEQ 467
+ S S WG + S E G S+S WG +A K P+ +
Sbjct: 1361 GSPSRKPSGWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAK 1420
Query: 468 S----GSAVSMGEKIGKR 509
+ GS S G+ G R
Sbjct: 1421 TSSGWGSEASWGKSSGDR 1438
>ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa]
gi|550346662|gb|EEE84012.2| hypothetical protein
POPTR_0001s06460g [Populus trichocarpa]
Length = 888
Score = 81.3 bits (199), Expect = 2e-13
Identities = 69/198 (34%), Positives = 93/198 (46%), Gaps = 18/198 (9%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDEL-EEDEDMGLYLSPNRDSGSDMPIFEDRVEF 188
D YSFL++VRS++ E T CLGAEVD+L EDED LSP S SD P FED EF
Sbjct: 217 DAYSFLNMVRSTAGGEESVTACLGAEVDDLILEDEDWN--LSPEHHSSSDKPTFEDSAEF 274
Query: 189 DYNENLDEGNLSGSAWEKASSEK----CSGSWDVAGKTQNGAEK----GVNQSDS----W 332
++ + S W KASS K +G+WDV G EK G++ +++ W
Sbjct: 275 ---QDFLGNQPAESNWGKASSLKDGSWSAGNWDVDKNDSAGKEKPWSLGMSSAETNDVGW 331
Query: 333 -SAWGKKVDEAVSDPGNGEQSGSWSAWGEKAKEADSNPQQSGVGEQSGSAVSMGEKIGKR 509
+A +K++ + + + QS S S W K E + Q A S +G
Sbjct: 332 DTAATRKINSSWNSENDVTQSNSLSGWATKKSETHNG---FATKVQEKPARSNDWDVGTA 388
Query: 510 WWFFLG----AKG*KRWW 551
W G A K WW
Sbjct: 389 WGRKAGDNKFANVTKSWW 406
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 80.9 bits (198), Expect = 2e-13
Identities = 73/199 (36%), Positives = 88/199 (44%), Gaps = 30/199 (15%)
Frame = +3
Query: 3 DARDVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRV 182
D DVY FLH+VRSS+ E TGCLG EVD LE++ D LSP + SD PIFED V
Sbjct: 1244 DGVDVYDFLHMVRSSTGIEELDTGCLGEEVDGLEDEFDWS--LSPEHNLCSDKPIFEDLV 1301
Query: 183 E-------FDYNENLDE----GNLSGSAWEK--ASSEKCSGSWDVAG----KTQNGAEKG 311
E NEN D S WEK S EK S W G + + EK
Sbjct: 1302 EDQSWLENKQENENWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKA 1361
Query: 312 VNQSDSWSAWGKKVDEAVSDPGNGEQSG-----SWSAWGEKA---KEADSNPQ--QSGVG 461
+ S S WG + S E G S+S WG +A K P+ +S
Sbjct: 1362 GSPSRKPSGWGTEASWGESSSDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVRSPAA 1421
Query: 462 EQS---GSAVSMGEKIGKR 509
+ S GS S G+ G R
Sbjct: 1422 KTSSGWGSEASWGKSPGDR 1440
>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 80.1 bits (196), Expect = 4e-13
Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Frame = +3
Query: 3 DARDVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRV 182
+ DVYSFLH+V+ + +E E CLG ++D+L E+E++ L +SP R+SG + +FE+
Sbjct: 1239 EGMDVYSFLHMVKGRTDREEETDACLGEDIDDLLEEENLDLEMSPPRNSGFE-AVFEENP 1297
Query: 183 EFDYNENLDEGNLSGSAWEKASSEKCSGSWDVAGKTQNGAEKGVNQSD--SWSAWGKKVD 356
E N + + W+ SS+ S + +G N AE +SD S+WGK V
Sbjct: 1298 EV-------LNNSTSNGWDVNSSQTESKTNGWSGWVSNKAETNEGRSDRAQESSWGKTVT 1350
Query: 357 EAVSDPGN----------GEQSGSWSAWGEKAKE---ADSNPQQSGVGEQSGSAVSMGEK 497
+ S + +S WSAWG K E S + G V+ +
Sbjct: 1351 QEDSSKSSAWNTNTTGHTNTKSNEWSAWGSKKSEIQAGGSEKVEGSWGSGKTKDVTQKDN 1410
Query: 498 IGKRWW 515
G W
Sbjct: 1411 FGSGAW 1416
>gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
[Theobroma cacao]
Length = 1675
Score = 77.4 bits (189), Expect = 2e-12
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLY-LSPNRDSGSDMPIFEDRVEF 188
DVY+FLH++ S+S T CLG EVD+L + ++M + LSP +G D P+FED +F
Sbjct: 1244 DVYNFLHMLSSASGPS-STTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADF 1302
Query: 189 DYNENLDEGNLSGSAWEKASSEKCSGSWDVAGKTQNGAEKG----------VNQSDSWSA 338
EN + + S+WEK S SW+V+ AE G QSD W
Sbjct: 1303 ---ENDLDFQPAESSWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSD-WCD 1358
Query: 339 WG---KKVDEAVSDPGNGEQSGSWSAWG-EKAKEADSNPQQSGVGEQS 470
WG K +A + + + W WG K+K + +G EQ+
Sbjct: 1359 WGTSKSKTQDAAAAATSTTKKTEWCDWGTSKSKTQEVAATVTGTAEQN 1406
>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 77.4 bits (189), Expect = 2e-12
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLY-LSPNRDSGSDMPIFEDRVEF 188
DVY+FLH++ S+S T CLG EVD+L + ++M + LSP +G D P+FED +F
Sbjct: 1244 DVYNFLHMLSSASGPS-STTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADF 1302
Query: 189 DYNENLDEGNLSGSAWEKASSEKCSGSWDVAGKTQNGAEKG----------VNQSDSWSA 338
EN + + S+WEK S SW+V+ AE G QSD W
Sbjct: 1303 ---ENDLDFQPAESSWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSD-WCD 1358
Query: 339 WG---KKVDEAVSDPGNGEQSGSWSAWG-EKAKEADSNPQQSGVGEQS 470
WG K +A + + + W WG K+K + +G EQ+
Sbjct: 1359 WGTSKSKTQDAAAAATSTTKKTEWCDWGTSKSKTQEVAATVTGTAEQN 1406
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 76.3 bits (186), Expect(2) = 3e-12
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDEL-EEDEDMGLYLSPNRDSGSDMPIFEDRVEF 188
D+YSFLHLVRS S + T CLGAEV++L EDE++ L +SP S + P+FED EF
Sbjct: 1308 DIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEF 1367
Query: 189 DYNENLDEGNLSGSAWEKASSEKCSGSWDVAGKTQNGAEKGVNQSDSWSAWG-----KKV 353
+N E ++ GS G W V + A + +WS+WG K
Sbjct: 1368 ---QNTWENHVPGS----------GGDWAVNQNKETTA--STLKPSAWSSWGTDKVTMKD 1412
Query: 354 DEAVSDPGNGEQSGSW---SAWG-EKAKEA------DSNPQQSGVGE 464
+ +P +S W WG +KA+ + +P+ SG E
Sbjct: 1413 TFSTREPDESSRSAGWDDKGTWGTDKAQNTAFRRTHEDSPRSSGRDE 1459
Score = 21.2 bits (43), Expect(2) = 3e-12
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1
Query: 481 SAWGKKSERDGGSSWGQ 531
SAWGKK + + W +
Sbjct: 1471 SAWGKKIDEADKTGWNK 1487
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 76.3 bits (186), Expect(2) = 3e-12
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDEL-EEDEDMGLYLSPNRDSGSDMPIFEDRVEF 188
D+YSFLHLVRS S + T CLGAEV++L EDE++ L +SP S + P+FED EF
Sbjct: 1248 DIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEF 1307
Query: 189 DYNENLDEGNLSGSAWEKASSEKCSGSWDVAGKTQNGAEKGVNQSDSWSAWG-----KKV 353
+N E ++ GS G W V + A + +WS+WG K
Sbjct: 1308 ---QNTWENHVPGS----------GGDWAVNQNKETTA--STLKPSAWSSWGTDKVTMKD 1352
Query: 354 DEAVSDPGNGEQSGSW---SAWG-EKAKEA------DSNPQQSGVGE 464
+ +P +S W WG +KA+ + +P+ SG E
Sbjct: 1353 TFSTREPDESSRSAGWDDKGTWGTDKAQNTAFRRTHEDSPRSSGRDE 1399
Score = 21.2 bits (43), Expect(2) = 3e-12
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1
Query: 481 SAWGKKSERDGGSSWGQ 531
SAWGKK + + W +
Sbjct: 1411 SAWGKKIDEADKTGWNK 1427
>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
Length = 1081
Score = 75.1 bits (183), Expect = 1e-11
Identities = 61/180 (33%), Positives = 81/180 (45%), Gaps = 39/180 (21%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDEL-EEDEDMGLYLSPNRDSGSDMPIFEDRVEF 188
D+YSFLHLVRS S + T CLGAEV++L EDE++ L +SP S + P+FED EF
Sbjct: 440 DIYSFLHLVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEF 499
Query: 189 -----------------DYNENLDEGNLSGSAWEKASSEKC----------------SGS 269
+ N+ L SAW ++K S
Sbjct: 500 QNTWENHVPDSGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPEESSRSAG 559
Query: 270 WDVAG-----KTQNGAEKGVNQSDSWSAWGKKVDEAVSDPGNGEQSGSWSAWGEKAKEAD 434
WD G K QN A + ++ DS + G+ DE D G + SAWG+K EAD
Sbjct: 560 WDDKGTWGTDKAQNTAFRRTHE-DSPRSSGR--DETFRD---GRPQFASSAWGKKIDEAD 613
>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
gi|482562261|gb|EOA26451.1| hypothetical protein
CARUB_v10022497mg [Capsella rubella]
Length = 1959
Score = 74.7 bits (182), Expect = 2e-11
Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRVEFD 191
DVYSFL +VRS+++ + + + ++ E+E SP RDS P FED EF
Sbjct: 1245 DVYSFLQMVRSTTSSDA----FVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSAEF- 1299
Query: 192 YNENL-DEGNLSGSAWEKASS--EKCSG--SWDVA------GKTQNGAEK--GVNQSDSW 332
+NL D+G S S WEK+SS CSG W V+ T++ EK V + D+W
Sbjct: 1300 --QNLHDDGKQSESNWEKSSSWDNGCSGGSEWGVSKSTGGESNTESNWEKTTSVEKEDAW 1357
Query: 333 SAWGKKVDEAVSDPGNGEQSGSWSAWGEKAKEADSN 440
S W K D S +S S AWG K K+ D+N
Sbjct: 1358 SGWNTKKDAQES-----SKSDSGGAWGIKTKDDDAN 1388
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 74.3 bits (181), Expect = 2e-11
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 10/152 (6%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMG-LYLSPNRDSGSDMPIFEDRVEF 188
DV++FLH+V +++ +E+ T LG E+D+L D + G + LSP +S SD P+FED VEF
Sbjct: 1251 DVFNFLHMVNAANGEELT-TAALGTEIDDLVPDYENGDVSLSPEHNSSSDKPVFEDIVEF 1309
Query: 189 DYN-ENLDEGNLSGSAWEKASSEKCSG-SWDVAGKTQNGAEKGVN---QSDSWSAWGKKV 353
N EN+ S+W+ + G W G + G + G++ Q+DS SAWG K
Sbjct: 1310 PDNFENVP----GKSSWDSIYTASTGGKDW---GAVKIGTQDGISAETQADSTSAWGIKT 1362
Query: 354 --DEAVSDPGNGEQS--GSWSAWGEKAKEADS 437
++ S G + + + SAWG K + D+
Sbjct: 1363 PREDDTSPWGTAKTATEDAPSAWGTKTVKEDA 1394
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 72.8 bits (177), Expect(2) = 2e-11
Identities = 49/155 (31%), Positives = 83/155 (53%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRVEFD 191
DVY+FLHLV S++ +EV+ G LG +++ E+D M LSP +++ + +FE+ +E
Sbjct: 1045 DVYNFLHLVSSANEEEVDSGG-LGEDIESFEKDVYMEPALSPEQENKA---VFEETLEIG 1100
Query: 192 YNENLDEGNLSGSAWEKASSEKCSGSWDVAGKTQNGAEKGVNQSDSWSAWGKKVDEAVSD 371
+ ++ + S+W+ S SG+ A K G+ WS+WG K D+A +
Sbjct: 1101 VDSDITGAD--ESSWDAFPS---SGTGWNANKIDTGSGSA---EGGWSSWGSKKDQA--N 1150
Query: 372 PGNGEQSGSWSAWGEKAKEADSNPQQSGVGEQSGS 476
P + ++G WS+ G K K + +SG + S S
Sbjct: 1151 PEDSSKTGGWSSGGSKQKPQPEDSSKSGGWDASKS 1185
Score = 21.6 bits (44), Expect(2) = 2e-11
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 484 AWGKKSERDGGSSWGQKVE 540
+WG ++ D WGQ V+
Sbjct: 1185 SWGGSNQGDPSPVWGQPVK 1203
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 70.5 bits (171), Expect = 3e-10
Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRVEFD 191
DVYSFL +V S++ + + + ++ E+E SP RDS P FED +F
Sbjct: 1245 DVYSFLQMVISTTNADA----FVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSADF- 1299
Query: 192 YNENL-DEGNLSGSAWEKASS--EKCSG--SWDVAGKTQNGAE--------KGVNQSDSW 332
+NL DEG SG+ WEK+SS CSG W V+ T A V + D+W
Sbjct: 1300 --QNLHDEGKPSGANWEKSSSWDNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAW 1357
Query: 333 SAWGKKVDEAVSDPGNGEQSGSWSAWGEKAKEADSN 440
S+W + D S +S S AWG K K+AD++
Sbjct: 1358 SSWNTRKDAQES-----SKSDSGGAWGIKTKDADAD 1388
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 70.5 bits (171), Expect = 3e-10
Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRVEFD 191
DVYSFL +V S++ + + + ++ E+E SP RDS P FED +F
Sbjct: 1245 DVYSFLQMVISTTNADA----FVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSADF- 1299
Query: 192 YNENL-DEGNLSGSAWEKASS--EKCSG--SWDVAGKTQNGAE--------KGVNQSDSW 332
+NL DEG SG+ WEK+SS CSG W V+ T A V + D+W
Sbjct: 1300 --QNLHDEGKPSGANWEKSSSWDNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAW 1357
Query: 333 SAWGKKVDEAVSDPGNGEQSGSWSAWGEKAKEADSN 440
S+W + D S +S S AWG K K+AD++
Sbjct: 1358 SSWNTRKDAQES-----SKSDSGGAWGIKTKDADAD 1388
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 70.5 bits (171), Expect = 3e-10
Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Frame = +3
Query: 12 DVYSFLHLVRSSSAQEVEGTGCLGAEVDELEEDEDMGLYLSPNRDSGSDMPIFEDRVEFD 191
DVYSFL +V S++ + + + ++ E+E SP RDS P FED +F
Sbjct: 108 DVYSFLQMVISTTNADA----FVSSPGFDVTEEEMAEWAESPERDSALGEPKFEDSADF- 162
Query: 192 YNENL-DEGNLSGSAWEKASS--EKCSG--SWDVAGKTQNGAE--------KGVNQSDSW 332
+NL DEG SG+ WEK+SS CSG W V+ T A V + D+W
Sbjct: 163 --QNLHDEGKPSGANWEKSSSWDNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAW 220
Query: 333 SAWGKKVDEAVSDPGNGEQSGSWSAWGEKAKEADSN 440
S+W + D S +S S AWG K K+AD++
Sbjct: 221 SSWNTRKDAQES-----SKSDSGGAWGIKTKDADAD 251