BLASTX nr result
ID: Atropa21_contig00038025
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00038025
(660 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABI34321.1| RNase H family protein [Solanum demissum] 76 1e-11
ref|XP_006358721.1| PREDICTED: uncharacterized protein LOC102596... 50 6e-09
ref|XP_004234855.1| PREDICTED: putative ribonuclease H protein A... 40 7e-07
ref|XP_004253277.1| PREDICTED: uncharacterized protein LOC101244... 41 2e-06
ref|XP_004242524.1| PREDICTED: uncharacterized protein LOC101258... 49 2e-06
ref|XP_004248595.1| PREDICTED: uncharacterized protein LOC101261... 50 3e-06
>gb|ABI34321.1| RNase H family protein [Solanum demissum]
Length = 945
Score = 75.9 bits (185), Expect = 1e-11
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Frame = +1
Query: 115 YYKYSVKDYIVNGEWNSPELSNILTPELIQQILTVPIGDS*HKRLCC-MEFN*GWILFK* 291
Y K +VKD+I EW+ +LS+IL P+++ QI+++PIGD + G K
Sbjct: 493 YNKDNVKDFIHKREWDFDKLSDILPPQVVNQIVSIPIGDPNQSDYAIWIPSENGHFTTKS 552
Query: 292 IILELYQDFRKRNTDTSMV*HNCLPFKIFFIDWRXXXXXXXXXXXXSE----LTAKCKCC 459
++ + R++N + + H PFK+ F+ WR + + + C CC
Sbjct: 553 AYVDC-SNTREKNDMRNKIWHGKFPFKMSFLTWRLVQNKLPFYDTVGKFVDNIDSNCVCC 611
Query: 460 TNSQYETMSHVFLEGDAAQMVWK 528
N + ET++HVFL D A +WK
Sbjct: 612 KNMKTETINHVFLNSDVASYLWK 634
>ref|XP_006358721.1| PREDICTED: uncharacterized protein LOC102596481 [Solanum tuberosum]
Length = 1135
Score = 50.1 bits (118), Expect(2) = 6e-09
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Frame = +1
Query: 121 KYSVKDYIVNGEWNSPELSNILTPEL---IQQILTVPIGDS*HKRLCCMEFN*GWILFK* 291
K VK + G W+ +L N ++ E+ I + + P+ + + M G K
Sbjct: 825 KIEVKYFTHQGAWDREKLLNKISEEMTDYIMESIKPPLEEYINDVAWWMGSTQGIFTVK- 883
Query: 292 IILELYQDFRKRNTDTSMV*HNCLPFKIFFIDWRXXXXXXXXXXXXS----ELTAKCKCC 459
EL + ++R TD ++ +PFK+ F WR ++ ++C CC
Sbjct: 884 SAWELMRHKQERRTDYQLIWTKDVPFKMNFFLWRLWKRRIATDDNLKRMKIQIVSRCWCC 943
Query: 460 TNSQYETMSHVFLEGDAAQMVWK 528
+ ++ ETM+H+FL A +W+
Sbjct: 944 SETEEETMTHIFLTAPIANRLWR 966
Score = 36.6 bits (83), Expect(2) = 6e-09
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 8 VEQNIVWHIQTDNINFW*DNWSGMGAI 88
VE NI W I+ N +FW DNW+ GA+
Sbjct: 787 VEHNIWWQIKAGNSSFWFDNWTKQGAL 813
>ref|XP_004234855.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 440
Score = 40.4 bits (93), Expect(2) = 7e-07
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 8 VEQNIVWHIQTDNINFW*DNWSGMGAIARLT 100
VEQ+I W++Q N +FW DNW G G +A+ T
Sbjct: 218 VEQHIHWNLQAGNCSFWWDNWLGTGPLAQHT 248
Score = 39.3 bits (90), Expect(2) = 7e-07
Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 16/166 (9%)
Frame = +1
Query: 79 GCYSQTHSGRRTYYKYSVKDYIVNGEWNSPELSNILTPELIQQILTVPIGDS*HK----- 243
G +Q + + +V +++ NGEW +L + IL I H+
Sbjct: 242 GPLAQHTTSSNRFNNITVAEFLENGEWKWSKLMKHAPVTQLSSILATRIPQHQHRPDQAI 301
Query: 244 -------RLCCMEFN*GWILFK*IILELYQDFRKRNTDTSMV*HNCLPFKIFFIDWRXXX 402
R C W E + + +N S++ H +PFK F+ WR
Sbjct: 302 WKPNTHGRFSCTS---AW--------EEIRSKKAKNNFNSLIWHKSIPFKTSFLLWRTLK 350
Query: 403 XXXXXXXXXSEL---TAKCKCC-TNSQYETMSHVFLEGDAAQMVWK 528
+ C CC + +T+ H+F G A VW+
Sbjct: 351 GKLPTNEKLFNFGIEPSPCFCCFDRAGMDTVEHIFNSGPFAAKVWR 396
>ref|XP_004253277.1| PREDICTED: uncharacterized protein LOC101244169 [Solanum
lycopersicum]
Length = 764
Score = 40.8 bits (94), Expect(2) = 2e-06
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 13/143 (9%)
Frame = +1
Query: 142 IVNGEWNS----PELSNILTPELIQQILTVPIGDS*HKRLCCMEFN*GWI---LFK*IIL 300
+ NG+WN + IL P ++Q + GD E N W+ K I
Sbjct: 521 LTNGKWNERFIRQHVPAILIPHILQTCINYKEGD---------EDNAIWLPEESGKFSIA 571
Query: 301 ELYQDFR-KRNTD--TSMV*HNCLPFKIFFIDWRXXXXXXXXXXXXS---ELTAKCKCCT 462
+ R K++TD +++ H +PFKI F WR + +C CC
Sbjct: 572 SAWDIIRRKKSTDYINTIIWHKYIPFKISFFIWRAIRGKLPTNDSLQIFGKPAEECYCCY 631
Query: 463 NSQYETMSHVFLEGDAAQMVWKH 531
+ ++H+ G A +WK+
Sbjct: 632 KQGKDDINHILSTGHFANYIWKY 654
Score = 37.4 bits (85), Expect(2) = 2e-06
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +2
Query: 8 VEQNIVWHIQTDNINFW*DNWSGMGAIA 91
VE I W IQ+ N W DNW+G GAIA
Sbjct: 476 VEVQIRWQIQSGTSNLWWDNWTGNGAIA 503
>ref|XP_004242524.1| PREDICTED: uncharacterized protein LOC101258077 [Solanum
lycopersicum]
Length = 1454
Score = 48.9 bits (115), Expect(2) = 2e-06
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Frame = +1
Query: 130 VKDYIVNGEWNSPELSNILTPELIQQILTVPI----GDS*HKRLCCMEFN*GWILFK*II 297
V D+++NG WN L + P+L+ IL I G+ E + I
Sbjct: 1029 VADFLINGNWNERLLRQHVPPQLVPYILQTKINYQAGNIDTSIWTPTESG------QFTI 1082
Query: 298 LELYQDFRK-RNTD--TSMV*HNCLPFKIFFIDWRXXXXXXXXXXXXSEL---TAKCKCC 459
+ RK RN D +++ H +PFK+ F WR + + C CC
Sbjct: 1083 SSAWDSIRKKRNKDPINNIIWHKQIPFKVSFFIWRALRGKLPTNENLQRIGKNLSDCYCC 1142
Query: 460 TNSQYETMSHVFLEGDAAQMVWK 528
N + ++H+ + G+ A+ +WK
Sbjct: 1143 YNKGKDDINHILINGNFAKYIWK 1165
Score = 28.9 bits (63), Expect(2) = 2e-06
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 8 VEQNIVWHIQTDNINFW*DNW 70
VE I WHIQ+ +FW D W
Sbjct: 989 VESLIKWHIQSGTCSFWWDCW 1009
>ref|XP_004248595.1| PREDICTED: uncharacterized protein LOC101261371 [Solanum
lycopersicum]
Length = 1246
Score = 50.4 bits (119), Expect(2) = 3e-06
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Frame = +1
Query: 130 VKDYIVNGEWNSPELSNILTPELIQQILTVPIGDS*HKRLCCMEFN*GWILFK*---IIL 300
V D+I +G+WN + + + P I +IL + S K E N WI + I
Sbjct: 836 VTDFIKDGKWNESLIRHQVNPLFIPKILQTKLNYSTGK-----EDNAIWIPTETGNFTIA 890
Query: 301 ELYQDFR-KRNTDT--SMV*HNCLPFKIFFIDWRXXXXXXXXXXXXSEL---TAKCKCCT 462
++ R KR DT +++ H LPFKI F WR +KC CC
Sbjct: 891 SAWECIRNKRPIDTINTIIWHKHLPFKIAFFIWRALKGKLPTNELLQRFGSAISKCYCCY 950
Query: 463 NSQYETMSHVFLEGDAAQMVWK 528
+ + ++H+ + G+ A+ +WK
Sbjct: 951 SKGKDDINHILINGNFAKHIWK 972
Score = 26.9 bits (58), Expect(2) = 3e-06
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 8 VEQNIVWHIQTDNINFW*DNW 70
VE I W I + +FW DNW
Sbjct: 795 VESLIKWQIHSGTSSFWWDNW 815