BLASTX nr result
ID: Atropa21_contig00037730
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00037730
(557 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein A... 69 5e-18
ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581... 55 4e-17
ref|XP_004252203.1| PREDICTED: uncharacterized protein LOC101264... 49 3e-16
ref|XP_004250861.1| PREDICTED: uncharacterized protein LOC101265... 48 6e-16
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 52 2e-15
ref|XP_004233578.1| PREDICTED: putative ribonuclease H protein A... 45 5e-14
ref|XP_004253436.1| PREDICTED: uncharacterized protein LOC101262... 47 2e-13
ref|XP_004253277.1| PREDICTED: uncharacterized protein LOC101244... 48 4e-13
gb|EOY02236.1| Uncharacterized protein TCM_011923 [Theobroma cacao] 45 5e-12
ref|XP_004301904.1| PREDICTED: uncharacterized protein LOC101292... 45 6e-12
gb|EOX96782.1| Uncharacterized protein TCM_005953 [Theobroma cacao] 47 8e-12
ref|XP_004239567.1| PREDICTED: uncharacterized protein LOC101262... 57 2e-11
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 44 8e-11
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga... 39 5e-10
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers... 42 1e-09
ref|XP_004250606.1| PREDICTED: uncharacterized protein LOC101247... 50 1e-09
ref|XP_004248595.1| PREDICTED: uncharacterized protein LOC101261... 50 3e-09
ref|XP_004244918.1| PREDICTED: putative ribonuclease H protein A... 47 4e-09
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript... 40 4e-09
ref|XP_004231462.1| PREDICTED: uncharacterized protein LOC101258... 52 5e-09
>ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 885
Score = 69.3 bits (168), Expect(2) = 5e-18
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
LVLIPKKE++++F DLRPISLS F NKIISR+L++R+VKVL IIS Q
Sbjct: 20 LVLIPKKEVVDSFGDLRPISLSTFINKIISRLLHDRLVKVLPTIISQNQ 68
Score = 47.4 bits (111), Expect(2) = 5e-18
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +3
Query: 432 EIQITEKIHNVMIKLYIDKACDRVSWIFLSQVLKTFGFSKVI 557
+I K HNV++KL + KA DRVSWIFL++VL++FG S+ I
Sbjct: 90 DINRRNKNHNVVVKLDMAKAYDRVSWIFLTKVLRSFGCSERI 131
>ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
Length = 1946
Score = 54.7 bits (130), Expect(3) = 4e-17
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
+VT EQN+ L LP+ E K V+ +N S+ GPD G F+Q +I D + + ++A+
Sbjct: 194 MVTEEQNQNLKALPTKEESKQVVYSMNPNSAPGPDGFGGKFYQACWDIIQDELLEAVLAY 253
Query: 182 FYRQELPKFNTHT 220
F +PKF +H+
Sbjct: 254 FSGHIMPKFMSHS 266
Score = 44.7 bits (104), Expect(3) = 4e-17
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
LV++PK E N F + RPISL+ F +KIIS++L R+ +L +IS Q
Sbjct: 268 LVVLPKVEHPNRFNEFRPISLTNFTSKIISKILCLRLAPILPHLISENQ 316
Score = 33.9 bits (76), Expect(3) = 4e-17
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +3
Query: 459 NVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
NV+IKL + KA D VSW F VL GF +V
Sbjct: 347 NVVIKLDMAKAYDSVSWSFTCLVLSAMGFGEV 378
>ref|XP_004252203.1| PREDICTED: uncharacterized protein LOC101264798 [Solanum
lycopersicum]
Length = 547
Score = 49.3 bits (116), Expect(3) = 3e-16
Identities = 25/73 (34%), Positives = 43/73 (58%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
+V + QN L LP+ +K VF +N S++GPD G+FFQ NI + + +++ A
Sbjct: 160 MVNHNQNTQLTKLPNIKGLKEVVFSMNTNSAAGPDGMNGYFFQKCWNIIKEYLMEVLHAL 219
Query: 182 FYRQELPKFNTHT 220
F + +PK+ +H+
Sbjct: 220 FNGKIIPKYFSHS 232
Score = 47.4 bits (111), Expect(3) = 3e-16
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
+VL+PK N F + RPISLS F +KIIS+++ +R+ ++L +IS+ Q
Sbjct: 234 IVLLPKVNNPNKFTEFRPISLSNFTSKIISKLVSKRLSRILPSLISNNQ 282
Score = 33.9 bits (76), Expect(3) = 3e-16
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 459 NVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
NV+IKL + KA D VSW ++ VL+ GF++V
Sbjct: 313 NVIIKLDMAKAYDWVSWSYICLVLRKMGFNEV 344
>ref|XP_004250861.1| PREDICTED: uncharacterized protein LOC101265889 [Solanum
lycopersicum]
Length = 754
Score = 48.1 bits (113), Expect(3) = 6e-16
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
LV +PK + N D RPISLS F NKIIS++L R+V +L I+S Q
Sbjct: 118 LVFLPKVDHPNKLKDYRPISLSNFTNKIISKILSTRLVVILPDIVSENQ 166
Score = 44.7 bits (104), Expect(3) = 6e-16
Identities = 20/72 (27%), Positives = 41/72 (56%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
+++Y++N L +PS +E++ + +N S+ GPD G F+Q +I +++ + +F
Sbjct: 44 MISYDKNSDLYRIPSEDELRRIIMIMNPNSAPGPDCIGGKFYQECFDIIKEDLMAAVTSF 103
Query: 182 FYRQELPKFNTH 217
F +P+ TH
Sbjct: 104 FNGNIMPRHMTH 115
Score = 36.6 bits (83), Expect(3) = 6e-16
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +3
Query: 435 IQITEKIHNVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
I++ ++ NV+IKL + KA DRVSW + VL+ GFS++
Sbjct: 189 IKVPKEGMNVVIKLDMVKAYDRVSWAYTCIVLRKMGFSEL 228
>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 528
Score = 52.0 bits (123), Expect(3) = 2e-15
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 20 NK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAFFYR-QE 196
N L +PSN+E+K AVF LN +S+ GPD F+Q + +I ++V K ++ FF
Sbjct: 109 NHALTMIPSNDEIKQAVFSLNNDSAPGPDGFGSCFYQIYWDIVKEDVIKAVLQFFNTGWI 168
Query: 197 LPKFNTHT 220
LP FN +T
Sbjct: 169 LPNFNANT 176
Score = 40.8 bits (94), Expect(3) = 2e-15
Identities = 18/49 (36%), Positives = 33/49 (67%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
L+LIPK + ++ RPI+++ F KIIS++L +R+ +++ I+S Q
Sbjct: 177 LILIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQ 225
Score = 35.0 bits (79), Expect(3) = 2e-15
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 459 NVMIKLYIDKACDRVSWIFLSQVLKTFGFSK 551
N+ K+ I KA D ++W FL +VLK FGFS+
Sbjct: 256 NLAFKVDISKAFDTLNWKFLLKVLKQFGFSE 286
>ref|XP_004233578.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 955
Score = 45.1 bits (105), Expect(3) = 5e-14
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +2
Query: 38 LPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAFFYRQELPKFNTH 217
+P+ +E++ V +N S+ GPD G F+QT +I D++ + AFF ++PK TH
Sbjct: 1 MPNIDELRNVVMNMNPHSAPGPDGIGGKFYQTCFDIRKDDLLAAVQAFFNGYDMPKHMTH 60
Score = 44.7 bits (104), Expect(3) = 5e-14
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
L+L+PK + N + RPISLS F NKIIS+++ R+ +L +IS Q
Sbjct: 63 LILLPKVDNPNKMKEFRPISLSNFTNKIISKIMSTRLAPILPLLISENQ 111
Score = 33.1 bits (74), Expect(3) = 5e-14
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +3
Query: 435 IQITEKIHNVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
I++ ++ NV++KL + KA DRVSW + V++ GF ++
Sbjct: 134 IKLPKEGKNVVLKLDMVKAYDRVSWSYTCLVVRKMGFGEL 173
>ref|XP_004253436.1| PREDICTED: uncharacterized protein LOC101262707 [Solanum
lycopersicum]
Length = 764
Score = 47.4 bits (111), Expect(3) = 2e-13
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
LVL+PK + N D RPISLS F NKIIS++L R+ +L I+S Q
Sbjct: 50 LVLLPKVDHPNQHKDYRPISLSNFTNKIISKILSTRLASILPHIVSMNQ 98
Score = 36.6 bits (83), Expect(3) = 2e-13
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 77 LNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAFFYRQELPKFNTH 217
+N S+ GPD G F+Q +I D++ ++++FF + +P++ TH
Sbjct: 1 MNPNSAPGPDGIRGKFYQVCFDIIKDDLMAVVLSFFNGKVMPRYMTH 47
Score = 36.6 bits (83), Expect(3) = 2e-13
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 435 IQITEKIHNVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
I+ ++ NV+IKL + KA DRVSW + +L+ GFS++
Sbjct: 121 IKAPKEGRNVVIKLDMVKAYDRVSWAYTCLILRKMGFSEI 160
>ref|XP_004253277.1| PREDICTED: uncharacterized protein LOC101244169 [Solanum
lycopersicum]
Length = 764
Score = 47.8 bits (112), Expect(3) = 4e-13
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
LVL+PK + N D RPISLS F NKIIS++L R+ +L I+S Q
Sbjct: 50 LVLLPKVDHPNQLKDYRPISLSNFTNKIISKILSTRLASILPHIVSMNQ 98
Score = 36.6 bits (83), Expect(3) = 4e-13
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 77 LNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAFFYRQELPKFNTH 217
+N S+ GPD G F+Q +I D++ ++++FF + +P++ TH
Sbjct: 1 MNPNSAPGPDGIGGKFYQVCFDIIKDDLMAVVLSFFNGKVMPRYMTH 47
Score = 35.4 bits (80), Expect(3) = 4e-13
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 435 IQITEKIHNVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
I+ ++ N++IKL + KA DRVSW + +L+ GFS++
Sbjct: 121 IKAPKEGRNLVIKLDMVKAYDRVSWAYTCLILRKMGFSEI 160
>gb|EOY02236.1| Uncharacterized protein TCM_011923 [Theobroma cacao]
Length = 1954
Score = 44.7 bits (104), Expect(3) = 5e-12
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
LVL+PKK ++D RPISL NKI+++ L R+ K+L IIS Q
Sbjct: 1078 LVLLPKKPNSCQWSDFRPISLCTVLNKIVTKTLANRLSKILPSIISENQ 1126
Score = 36.6 bits (83), Expect(3) = 5e-12
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +2
Query: 5 VTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAFF 184
++ N+ L PS E+K VF ++ +S +GPD F+Q +I ++ + ++ FF
Sbjct: 1005 ISITDNEFLCAAPSLKEIKEVVFNIDKDSVAGPDGFSSLFYQHCWDIIKQDLLEAVLDFF 1064
Query: 185 YRQELPKFNTHT 220
+P+ T T
Sbjct: 1065 NGTPMPQGVTST 1076
Score = 34.7 bits (78), Expect(3) = 5e-12
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +3
Query: 459 NVMIKLYIDKACDRVSWIFLSQVLKTFGFS 548
NV++KL + KA DR++W FL ++K FGF+
Sbjct: 1157 NVVLKLDMAKAYDRLNWDFLYLMMKQFGFN 1186
>ref|XP_004301904.1| PREDICTED: uncharacterized protein LOC101292910 [Fragaria vesca
subsp. vesca]
Length = 851
Score = 44.7 bits (104), Expect(3) = 6e-12
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
+VT E+N L T+PS E+ AV ++ +S+ GPD GHFF + +I G +V + F
Sbjct: 370 MVTEEENIFLTTIPSPEEILKAVKAMDLDSALGPDGFNGHFFASCWDIVGVDVVNAVQYF 429
Query: 182 FYRQEL 199
F +L
Sbjct: 430 FVNGQL 435
Score = 35.8 bits (81), Expect(3) = 6e-12
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +1
Query: 178 FFLSSGTSKVQYSH*LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGII 357
FF++ S S ++LIPK E ++ RPI+L+ F KII ++L R+ V II
Sbjct: 429 FFVNGQLSASFNSGLIILIPKVEHADSTKQFRPIALTDFVFKIIPKILALRLSSVSARII 488
Query: 358 SHTQ 369
S Q
Sbjct: 489 SPQQ 492
Score = 35.0 bits (79), Expect(3) = 6e-12
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 459 NVMIKLYIDKACDRVSWIFLSQVLKTFGFS 548
NV +K+ I KA D +SW FL VL+ FGF+
Sbjct: 523 NVAVKVDITKAFDTLSWDFLLHVLQAFGFN 552
>gb|EOX96782.1| Uncharacterized protein TCM_005953 [Theobroma cacao]
Length = 1659
Score = 47.0 bits (110), Expect(3) = 8e-12
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
LVL+PKK ++D RPISL NKI+++ML R+ K+L IIS Q
Sbjct: 975 LVLLPKKPNSCQWSDFRPISLCTVLNKIVTKMLANRLSKILPSIISENQ 1023
Score = 34.7 bits (78), Expect(3) = 8e-12
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +3
Query: 459 NVMIKLYIDKACDRVSWIFLSQVLKTFGFS 548
NV++KL + KA DR++W FL ++K FGF+
Sbjct: 1054 NVVLKLDMAKAYDRLNWDFLYLMMKQFGFN 1083
Score = 33.5 bits (75), Expect(3) = 8e-12
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 5 VTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAFF 184
++ N+ L PS E+ VF ++ +S GPD F+Q +I ++ + ++ FF
Sbjct: 902 ISITDNEFLCAAPSLKEINEVVFNIDKDSVVGPDGFSSLFYQHCWDIIKQDLLEAVLDFF 961
Query: 185 YRQELPKFNTHT 220
+P+ T T
Sbjct: 962 NGAPMPQGVTST 973
>ref|XP_004239567.1| PREDICTED: uncharacterized protein LOC101262916 [Solanum
lycopersicum]
Length = 895
Score = 56.6 bits (135), Expect(2) = 2e-11
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
+V +QN L LP +E+K VF +N S++GPD G+FFQ NI ++ ++ AF
Sbjct: 333 MVNVDQNTQLTKLPDMDEIKEVVFAMNPNSTAGPDGMNGYFFQKCWNIIKSDLIEVQHAF 392
Query: 182 FYRQELPKFNTHTNWFXXXXXXXXXXXXXXGQ*V*VFLLIRLSQ--GCYMKELLKF*MV* 355
F Q +PK+ +H+ F LI LS + +L+ +
Sbjct: 393 FSGQMIPKYFSHSCIVLLPKVNNPNKLTE-------FRLISLSNFTSKIISKLVSNRL-- 443
Query: 356 SLILKSI-------FV*SRSIMKNMLLAQEII 430
S IL S+ FV RSI +N++LAQEII
Sbjct: 444 SPILPSLISTNQFGFVKGRSISENIMLAQEII 475
Score = 37.7 bits (86), Expect(2) = 2e-11
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +3
Query: 459 NVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
NV+IKL + KA DRVSW ++ VL+ GF+KV
Sbjct: 486 NVIIKLDMAKAYDRVSWSYICLVLRKTGFNKV 517
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 43.9 bits (102), Expect(3) = 8e-11
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
L+T E NK L + S EVK A+F LN + + GPD F+Q + ++ G ++ K++ F
Sbjct: 362 LITEEMNKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNF 421
Query: 182 ----FYRQELPKFN 211
F+ + L + N
Sbjct: 422 HSTGFFDERLNETN 435
Score = 40.4 bits (93), Expect(3) = 8e-11
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
+ LIPK E A+ RPISL + K+IS++L R+ ++L +IS TQ
Sbjct: 436 ICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQ 484
Score = 27.3 bits (59), Expect(3) = 8e-11
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 468 IKLYIDKACDRVSWIFLSQVLKTFGFSK 551
IK + KA DRV W FL ++ GF++
Sbjct: 520 IKTDMSKAYDRVEWSFLRALMLKMGFAQ 547
>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1362
Score = 38.5 bits (88), Expect(3) = 5e-10
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 5 VTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMI 172
V+ + N L+ LPS +EVK A+F ++ + G D FFQ F +I G +V +
Sbjct: 419 VSTDMNTALLMLPSGDEVKEALFAMHPNKAPGIDGLHALFFQKFWHILGSDVISFV 474
Score = 37.4 bits (85), Expect(3) = 5e-10
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
+VLIPK + + D RPISL KI+S+ L R+ +L IIS Q
Sbjct: 492 IVLIPKCDHPQSMKDFRPISLCTVLYKILSKTLANRLKVILPAIISPNQ 540
Score = 33.1 bits (74), Expect(3) = 5e-10
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 468 IKLYIDKACDRVSWIFLSQVLKTFGF 545
+KL + KA DRV W FL +V+K GF
Sbjct: 576 LKLDMSKAYDRVEWCFLERVMKKMGF 601
>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 42.0 bits (97), Expect(3) = 1e-09
Identities = 23/63 (36%), Positives = 35/63 (55%)
Frame = +2
Query: 14 EQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAFFYRQ 193
+ N+ LI S+ E+K AVF ++ S+ G D G FFQ + I GD+VT+ + F
Sbjct: 307 QMNERLIRPVSSEEIKDAVFSIDPSSAPGSDGMSGLFFQHYWAIVGDHVTREVKMVFQTG 366
Query: 194 ELP 202
+P
Sbjct: 367 VMP 369
Score = 39.3 bits (90), Expect(3) = 1e-09
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +1
Query: 211 YSH*LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
Y+H L LIPK +DLRPISL KI+S++L +R+ +L I+S TQ
Sbjct: 374 YTH-LCLIPKVTHPVLMSDLRPISLCSVLYKIVSKVLVKRLKPLLSLIVSDTQ 425
Score = 26.6 bits (57), Expect(3) = 1e-09
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 468 IKLYIDKACDRVSWIFLSQVLKTFGF 545
+K + KA DRV W +L +L GF
Sbjct: 461 VKTDMSKAYDRVEWCYLRALLLALGF 486
>ref|XP_004250606.1| PREDICTED: uncharacterized protein LOC101247390 [Solanum
lycopersicum]
Length = 612
Score = 49.7 bits (117), Expect(2) = 1e-09
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
+V +QN L LP +E+K VF +N S++GPD G+FF+ NI +++ +++ F
Sbjct: 395 MVNKDQNTQLTKLPDMDELKEVVFSMNPNSAAGPDGMNGYFFKKCLNIIKNDLVEVLHPF 454
Query: 182 FYRQELPKFNTHT---------NWFXXXXXXXXXXXXXXGQ*V*VFLLIRLSQGCYMKEL 334
F Q +PK+ +H+ N + + + RLS
Sbjct: 455 FSGQMIPKYFSHSCIVLLPKVNNTNKLTEFRPISLSNFTSKIISKLVSNRLSP------- 507
Query: 335 LKF*MV*SLIL--KSIFV*SRSIMKNMLLAQEII 430
++ SLI +S FV RSI +N++ AQEII
Sbjct: 508 ----ILLSLISTNQSGFVKGRSISENIMHAQEII 537
Score = 38.5 bits (88), Expect(2) = 1e-09
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 459 NVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
NV+IKL ++KA DRVSW ++ VL+ GF++V
Sbjct: 548 NVIIKLDMEKAYDRVSWSYICLVLRKMGFNEV 579
>ref|XP_004248595.1| PREDICTED: uncharacterized protein LOC101261371 [Solanum
lycopersicum]
Length = 1246
Score = 50.1 bits (118), Expect(2) = 3e-09
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 21/164 (12%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
++T E+N L LP +E++G + +N S+ GPD G F+Q +I +++ + F
Sbjct: 323 IITQERNDSLDRLPDMDELRGVIMSMNPHSAPGPDGFGGKFYQVCFDIIKEDLLAAVKYF 382
Query: 182 FYRQELPKFNTHTNWFXXXXXXXXXXXXXXGQ*V*VFLLIRLSQGCYMKEL--------- 334
+ +P++ TH + + LL + C +K+
Sbjct: 383 YIGNSMPRYLTHAS---------------------LILLPKTDHPCRLKDFRPISLSNFA 421
Query: 335 ---------LKF*MV*SLIL---KSIFV*SRSIMKNMLLAQEII 430
+F ++ I+ +S FV RSI +N+LLAQEII
Sbjct: 422 NKIISKIISTRFGLILPGIIFENQSGFVKGRSIAENILLAQEII 465
Score = 37.0 bits (84), Expect(2) = 3e-09
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +3
Query: 459 NVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
NV+IKL + KA DRVSW + VL+ GFS+V
Sbjct: 476 NVVIKLDMVKAYDRVSWTYTCLVLRKLGFSEV 507
>ref|XP_004244918.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 1010
Score = 47.0 bits (110), Expect(2) = 4e-09
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
+VT +QN L LP E++ V +N S+ GPD G F+Q +I D++ + F
Sbjct: 44 MVTADQNDVLDKLPDMEELRKVVMSMNPNSAPGPDGIGGKFYQFCFDIIKDDLLAAVQDF 103
Query: 182 FYRQELPKFNTHTNWFXXXXXXXXXXXXXXGQ*V*VFLLIRLSQGCYMKELLKF*MV*SL 361
F + +P++ TH F I LS + +++ V S+
Sbjct: 104 FNGEIMPRYMTHACLVLLPKIEHPNKHKD-------FRPISLSN--FSNKIIS--KVMSM 152
Query: 362 ILKSI-----------FV*SRSIMKNMLLAQEII 430
L SI FV RSI +N+LLAQEII
Sbjct: 153 RLASIIPKLISDNQSGFVKGRSISENILLAQEII 186
Score = 39.7 bits (91), Expect(2) = 4e-09
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +3
Query: 435 IQITEKIHNVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
I++ ++ +NV+IKL + KA DRVSW + VL+ FGF ++
Sbjct: 189 IKLPKEGNNVVIKLDMVKAYDRVSWSYTCMVLRKFGFGEI 228
>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 400
Score = 40.4 bits (93), Expect(3) = 4e-09
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +1
Query: 223 LVLIPKKELINTFADLRPISLSIFANKIISRMLYERIVKVLDGIISHTQ 369
+ LIPK E A+ RPISL + K+IS++L R+ ++L +IS TQ
Sbjct: 70 ICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQ 118
Score = 38.1 bits (87), Expect(3) = 4e-09
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +2
Query: 20 NK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF----FY 187
NK L + S EVK A+F LN + + GPD F+Q + ++ G ++ K++ F F+
Sbjct: 2 NKSLTKVISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFF 61
Query: 188 RQELPKFN 211
+ L + N
Sbjct: 62 DERLNETN 69
Score = 27.3 bits (59), Expect(3) = 4e-09
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 468 IKLYIDKACDRVSWIFLSQVLKTFGFSK 551
IK + KA DRV W FL ++ GF++
Sbjct: 154 IKTDMSKAYDRVEWSFLRALMLKMGFAQ 181
>ref|XP_004231462.1| PREDICTED: uncharacterized protein LOC101258709 [Solanum
lycopersicum]
Length = 845
Score = 51.6 bits (122), Expect(2) = 5e-09
Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Frame = +2
Query: 2 LVTYEQNK*LITLPSNNEVKGAVFGLNGESSSGPDRCFGHFFQTF*NIAGDNVTKMIIAF 181
++T EQN L +P+ +E+K + +N S+ GPD G FFQ +I D++ + F
Sbjct: 50 IITDEQNIKLEQMPNIDELKNVIMNMNPNSAPGPDGIGGKFFQVCFDIIKDDLLAAVQHF 109
Query: 182 FYRQELPKFNTHTNWFXXXXXXXXXXXXXXGQ*V*VFLLIRLSQGCYMKELLKF*MV*SL 361
F ++PK+ TH F I LS + +++ M L
Sbjct: 110 FNGFDMPKYMTHACLVLIPKVEHPNKLKD-------FRPISLSN--FTNKIISKIMSTRL 160
Query: 362 --ILKSI-------FV*SRSIMKNMLLAQEIIRDTN 442
IL SI FV RSI +N++LAQEII N
Sbjct: 161 APILPSIISKNQSGFVKGRSISENIMLAQEIIHRIN 196
Score = 34.7 bits (78), Expect(2) = 5e-09
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 435 IQITEKIHNVMIKLYIDKACDRVSWIFLSQVLKTFGFSKV 554
I + + NV+IKL + KA DRVSW + VL+ GF ++
Sbjct: 195 INLPHEGDNVVIKLDMVKAYDRVSWAYTCLVLRKLGFGEL 234