BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00037454
         (628 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004239522.1| PREDICTED: uncharacterized protein LOC101244...   126   1e-47
gb|ADU56212.1| gag-pol polyprotein [Solanum lycopersicum]             128   1e-46
gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]     112   1e-42
gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]   111   3e-42
ref|XP_006340520.1| PREDICTED: uncharacterized protein LOC102599...   112   1e-34
ref|XP_004248966.1| PREDICTED: uncharacterized protein LOC101245...    89   6e-33
ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581...    79   9e-30
gb|EOY21478.1| DNA/RNA polymerases superfamily protein [Theobrom...    77   4e-28
gb|EOY19264.1| Uncharacterized protein TCM_044274 [Theobroma cacao]    77   4e-28
gb|EOY08678.1| DNA/RNA polymerases superfamily protein [Theobrom...    76   5e-28
gb|EOY26451.1| DNA/RNA polymerases superfamily protein [Theobrom...    75   8e-28
gb|EOY03075.1| CCHC-type integrase [Theobroma cacao]                   75   8e-28
gb|EOY08659.1| DNA/RNA polymerases superfamily protein [Theobrom...    75   2e-27
gb|EOX94130.1| DNA/RNA polymerases superfamily protein [Theobrom...    74   5e-27
gb|EOY08454.1| DNA/RNA polymerases superfamily protein [Theobrom...    74   1e-26
gb|EOY20325.1| Retrotransposon protein, Ty3-gypsy subclass, puta...    75   1e-26
emb|CAJ65807.1| polyprotein [Citrus sinensis]                          80   3e-26
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...    85   4e-26
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...    85   4e-26
ref|XP_004234875.1| PREDICTED: uncharacterized protein LOC101266...    92   6e-26

>ref|XP_004239522.1| PREDICTED: uncharacterized protein LOC101244956 [Solanum
            lycopersicum]
          Length = 933

 Score =  126 bits (317), Expect(2) = 1e-47
 Identities = 67/121 (55%), Positives = 85/121 (70%)
 Frame = -3

Query: 626  KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
            +LL DY+MTI YHP K N++ADA S KA SMG LA L    H    +V+SLANRFVRLD 
Sbjct: 687  ELLNDYEMTILYHPGKENVVADASSWKAASMGSLAMLQGSEHPLAKDVQSLANRFVRLDY 746

Query: 446  LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
               C++LA +E RSS+L+ I+  Q+DD  LCKIRDKV+ GE   +++D EGVLRIK  + 
Sbjct: 747  SEFCKVLAYMEARSSMLEHIRAQQFDDGDLCKIRDKVLKGETNASILDSEGVLRIKCHIC 806

Query: 266  V 264
            V
Sbjct: 807  V 807



 Score = 89.7 bits (221), Expect(2) = 1e-47
 Identities = 50/84 (59%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
 Frame = -1

Query: 253  DLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFVL-V*NYQQVKYENQR 77
            DL RLIM EA+  R  IH G   +YRDL+ HYWW RM R IV+ V    N QQVKYE+Q+
Sbjct: 812  DLTRLIMEEAH--RVSIHLGDTNLYRDLKQHYWWCRMKRDIVDIVSHCLNCQQVKYEHQK 869

Query: 76   PSDVSQSMSIPE*KKERIAMDFIV 5
            P  V+Q MSIPE K ERI+MDF+V
Sbjct: 870  PGGVTQRMSIPEWKWERISMDFVV 893


>gb|ADU56212.1| gag-pol polyprotein [Solanum lycopersicum]
          Length = 624

 Score =  128 bits (321), Expect(2) = 1e-46
 Identities = 71/121 (58%), Positives = 86/121 (71%)
 Frame = -3

Query: 626 KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
           +LLKDYD+TI YHP K N++A ALSRKA SMG LAHL    H    EV+ LAN  +RL++
Sbjct: 426 ELLKDYDITILYHPGKANVVAVALSRKAGSMGSLAHLQASRHPLAREVQILANDLMRLEV 485

Query: 446 LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
                 LACVE RSS LD+I+  Q++D KL +IRDKV+ GE K+A ID EGVLRIKG V 
Sbjct: 486 NEKGGFLACVEARSSSLDKIKGKQFNDEKLIRIRDKVLRGEAKEAQIDEEGVLRIKGRVC 545

Query: 266 V 264
           V
Sbjct: 546 V 546



 Score = 85.1 bits (209), Expect(2) = 1e-46
 Identities = 44/77 (57%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
 Frame = -1

Query: 262 RFCDLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFVL-V*NYQQVKYE 86
           R  DL+  I+ EA+ SRY IH GA KMYRDL+ H+WW RM R IV F+    N QQVKYE
Sbjct: 548 RVDDLINTILTEAHSSRYSIHPGATKMYRDLKQHFWWSRMKRDIVNFIAKCPNCQQVKYE 607

Query: 85  NQRPSDVSQSMSIPE*K 35
           +QRP    Q M IPE K
Sbjct: 608 HQRPGGTLQRMPIPEWK 624


>gb|AAT66771.2| Putative polyprotein, identical [Solanum demissum]
          Length = 1771

 Score =  112 bits (280), Expect(2) = 1e-42
 Identities = 60/121 (49%), Positives = 87/121 (71%)
 Frame = -3

Query: 626  KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
            +LLKDYD++I YHP K N++ADALSRKAVSMG LA L +      L+++SLAN  VRLDI
Sbjct: 1217 ELLKDYDLSILYHPGKANVVADALSRKAVSMGSLAFLSVEERPLALDIQSLANSMVRLDI 1276

Query: 446  LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
             +S  +LA + V+SSLLD+I+  Q++D  L  +RD+V++ +  +A +D +GVL+  G + 
Sbjct: 1277 SDSRCVLAFMRVQSSLLDRIRGCQFEDDTLVALRDRVLADDGGQATLDPDGVLKFAGRIC 1336

Query: 266  V 264
            V
Sbjct: 1337 V 1337



 Score = 87.4 bits (215), Expect(2) = 1e-42
 Identities = 48/87 (55%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = -1

Query: 262  RFCDLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV-LV*NYQQVKYE 86
            R  DL++LI+ EA++SRY IH G  KMYRDLR HYWW  M R I +FV      QQVK E
Sbjct: 1339 RVGDLIQLILSEAHESRYSIHPGTAKMYRDLRQHYWWSGMRRDIADFVSRCLCCQQVKAE 1398

Query: 85   NQRPSDVSQSMSIPE*KKERIAMDFIV 5
            + RP    Q + IPE K ERI MDF+V
Sbjct: 1399 HLRPGGEFQRLPIPEWKWERITMDFVV 1425


>gb|ABI34339.1| Polyprotein, 3'-partial, putative [Solanum demissum]
          Length = 1475

 Score =  111 bits (278), Expect(2) = 3e-42
 Identities = 60/121 (49%), Positives = 87/121 (71%)
 Frame = -3

Query: 626  KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
            +LLKDYD++I YHP K N++ADALSRKAVSMG LA L +      ++++ LAN  VRLDI
Sbjct: 1061 ELLKDYDLSILYHPGKANVVADALSRKAVSMGSLAFLSVEERPLAMDIQFLANSMVRLDI 1120

Query: 446  LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
             +S R+LA + V+SSLLD+I+  Q++D  L  +RD+V++G+  +A +  +GVLR  G + 
Sbjct: 1121 SDSRRVLAHMGVQSSLLDRIRGCQFEDEALVALRDRVLAGDGGQASLYPDGVLRFAGRIC 1180

Query: 266  V 264
            V
Sbjct: 1181 V 1181



 Score = 87.0 bits (214), Expect(2) = 3e-42
 Identities = 48/87 (55%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = -1

Query: 262  RFCDLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV-LV*NYQQVKYE 86
            R  DL++LI+ E ++SRY IH G  KMYRDLR HYWW  M R I +FV      QQVK E
Sbjct: 1183 RVGDLIQLILSEGHESRYSIHPGTTKMYRDLRQHYWWSGMRRDIADFVSRCLCCQQVKAE 1242

Query: 85   NQRPSDVSQSMSIPE*KKERIAMDFIV 5
            + RP  V + + IPE K ERI MDFIV
Sbjct: 1243 HLRPGGVFKRLPIPEWKWERITMDFIV 1269


>ref|XP_006340520.1| PREDICTED: uncharacterized protein LOC102599426 [Solanum tuberosum]
          Length = 1228

 Score =  112 bits (279), Expect(2) = 1e-34
 Identities = 65/119 (54%), Positives = 80/119 (67%)
 Frame = -3

Query: 620 LKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDILN 441
           LK++   ++   CK NM+ADALS +AVSMG LA L +   L   + KSLAN FV LD   
Sbjct: 416 LKNWRHYLYGVDCKANMVADALSLEAVSMGSLAMLQVGECLLARDFKSLANSFVSLDNSE 475

Query: 440 SCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVYV 264
           S ++LA VE RSSLL+QI T Q+DD  LCKIRDKV  GE   A++D E VLRIKG + V
Sbjct: 476 SGKVLAYVEARSSLLEQIWTQQFDDGDLCKIRDKVSKGEAMDAILDSERVLRIKGRICV 534



 Score = 60.8 bits (146), Expect(2) = 1e-34
 Identities = 28/44 (63%), Positives = 31/44 (70%)
 Frame = -1

Query: 253 DLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEF 122
           DL RLIM EAY  RY IH  A KMY DL+ HYWW RM + IV+F
Sbjct: 539 DLTRLIMEEAYSLRYSIHHEATKMYCDLKQHYWWSRMKKEIVDF 582


>ref|XP_004248966.1| PREDICTED: uncharacterized protein LOC101245305 [Solanum
           lycopersicum]
          Length = 256

 Score = 89.0 bits (219), Expect(2) = 6e-33
 Identities = 48/84 (57%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
 Frame = -1

Query: 253 DLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV-LV*NYQQVKYENQR 77
           DL +LIM EA+ SRY I   A KMY DL+ +YWW RM R IV+FV    N QQVKYE+Q+
Sbjct: 96  DLTKLIMEEAHSSRYSIPPRATKMYHDLKQYYWWCRMKRDIVDFVSRCFNCQQVKYEHQK 155

Query: 76  PSDVSQSMSIPE*KKERIAMDFIV 5
           P  ++Q M I E K ERIAM+F+V
Sbjct: 156 PGGITQRMPIAEWKWERIAMNFVV 179



 Score = 78.6 bits (192), Expect(2) = 6e-33
 Identities = 45/91 (49%), Positives = 60/91 (65%)
 Frame = -3

Query: 536 MGYLAHLIIF*HLFTLEVKSLANRFVRLDILNSCRILACVEVRSSLLDQIQTHQYDDIKL 357
           MG LA L +       +V+SLAN F+R DI    ++LA +E RS+LL+QI+  Q+DD  L
Sbjct: 1   MGSLAMLQVDERPLARDVQSLANSFLRPDISEPGKVLAYMEARSTLLEQIRAQQFDDGDL 60

Query: 356 CKIRDKVMSGEIKKAMIDGEGVLRIKGSVYV 264
            KI  KV+ GE K A++D EGVLRIKG + V
Sbjct: 61  FKIIYKVLKGEAKAAILDNEGVLRIKGRICV 91


>ref|XP_006364939.1| PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
          Length = 1946

 Score = 79.0 bits (193), Expect(2) = 9e-30
 Identities = 45/95 (47%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
 Frame = -1

Query: 271  YMSRFC-----DLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFVL-V* 110
            Y  R C      L   I+ EA+ S Y IH G+ KMYRDLR  YWWG M + I +FV    
Sbjct: 1506 YQGRLCVPCVDGLREKILEEAHNSSYSIHPGSTKMYRDLRDVYWWGGMKKDIAKFVSGCH 1565

Query: 109  NYQQVKYENQRPSDVSQSMSIPE*KKERIAMDFIV 5
            + QQVK E+QRP  ++Q + IP  K E I MDF+V
Sbjct: 1566 SCQQVKAEHQRPGGLTQDIEIPTWKWEEINMDFVV 1600



 Score = 77.8 bits (190), Expect(2) = 9e-30
 Identities = 48/121 (39%), Positives = 71/121 (58%)
 Frame = -3

Query: 626  KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
            + LKDYDM++ YHP K N++ADALSR  VSMG LAH+ I       EV  LA   VRL+ 
Sbjct: 1394 EFLKDYDMSVHYHPGKANVVADALSR--VSMGSLAHVDIGDREMAREVHRLARLGVRLEE 1451

Query: 446  LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
            + +  ++     RSSL+D++   Q  D  L +++  V  G+++     G+G LR +G + 
Sbjct: 1452 VGNGGVVVVDGARSSLVDEVIAKQDLDSSLLELKALVKEGKVEVFSQGGDGALRYQGRLC 1511

Query: 266  V 264
            V
Sbjct: 1512 V 1512


>gb|EOY21478.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 878

 Score = 76.6 bits (187), Expect(2) = 4e-28
 Identities = 50/121 (41%), Positives = 68/121 (56%)
 Frame = -3

Query: 626 KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
           +LLKDYD TI YHP K N++ADALSRK  SMG LAH+ I       E+ SL +  VRL++
Sbjct: 508 ELLKDYDCTILYHPGKANVVADALSRK--SMGSLAHIFIGRRSLVREIHSLGDIGVRLEV 565

Query: 446 LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
             +  +LA   VR  L+D+I+  Q  D  + K  +     + K      +GVLR    +Y
Sbjct: 566 AETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLY 625

Query: 266 V 264
           V
Sbjct: 626 V 626



 Score = 74.7 bits (182), Expect(2) = 4e-28
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = -1

Query: 250 LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYENQ 80
           L R I+ EA+ + Y++H GA KMY+DL+  YWW  + R + EFV   LV   QQVK E+Q
Sbjct: 632 LRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLV--CQQVKAEHQ 689

Query: 79  RPSDVSQSMSIPE*KKERIAMDFI 8
           +P+ + Q + +PE K E IAMDF+
Sbjct: 690 KPAGLLQPLPVPEWKWEHIAMDFV 713


>gb|EOY19264.1| Uncharacterized protein TCM_044274 [Theobroma cacao]
          Length = 860

 Score = 76.6 bits (187), Expect(2) = 4e-28
 Identities = 50/121 (41%), Positives = 68/121 (56%)
 Frame = -3

Query: 626 KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
           +LLKDYD TI YHP K N++ADALSRK  SMG LAH+ I       E+ SL +  VRL++
Sbjct: 342 ELLKDYDCTILYHPGKANVVADALSRK--SMGSLAHISIGRRSLVREIHSLGDIGVRLEV 399

Query: 446 LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
             +  +LA   VR  L+D+I+  Q  D  + K  +     + K      +GVLR    +Y
Sbjct: 400 AETSALLAHFRVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLY 459

Query: 266 V 264
           V
Sbjct: 460 V 460



 Score = 74.7 bits (182), Expect(2) = 4e-28
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = -1

Query: 250 LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYENQ 80
           L R I+ EA+ + Y++H GA KMY+DL+  YWW  + R + EFV   LV   QQVK E+Q
Sbjct: 466 LRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLV--CQQVKAEHQ 523

Query: 79  RPSDVSQSMSIPE*KKERIAMDFI 8
           +P+ + Q + +PE K E IAMDF+
Sbjct: 524 KPAGLLQPLPVPEWKWEHIAMDFV 547


>gb|EOY08678.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 666

 Score = 75.9 bits (185), Expect(2) = 5e-28
 Identities = 50/121 (41%), Positives = 68/121 (56%)
 Frame = -3

Query: 626 KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
           +LLKDYD TI YHP K N++ADALSRK  SMG LAH+ I       E+ SL +  VRL++
Sbjct: 225 ELLKDYDCTILYHPGKANVVADALSRK--SMGSLAHISIGRRSLVREIHSLGDIGVRLEV 282

Query: 446 LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
             +  +LA   VR  L+D+I+  Q  D  + K  +     + K      +GVLR    +Y
Sbjct: 283 AETNALLAHFRVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLY 342

Query: 266 V 264
           V
Sbjct: 343 V 343



 Score = 75.1 bits (183), Expect(2) = 5e-28
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = -1

Query: 250 LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYENQ 80
           L R I+ EA+ + Y++H GA KMY+DL+  YWW  + R + EFV   LV   QQVK E+Q
Sbjct: 349 LRRKILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLV--CQQVKAEHQ 406

Query: 79  RPSDVSQSMSIPE*KKERIAMDFI 8
           +P+ + Q + +PE K E IAMDF+
Sbjct: 407 KPAGLLQPLPVPEWKWEHIAMDFV 430


>gb|EOY26451.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 679

 Score = 75.5 bits (184), Expect(2) = 8e-28
 Identities = 50/121 (41%), Positives = 68/121 (56%)
 Frame = -3

Query: 626 KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
           +LLKDYD TI YHP K N++ADALSRK  SMG LAH+ I       E+ SL +  VRL++
Sbjct: 131 ELLKDYDCTILYHPGKANVVADALSRK--SMGSLAHISIGRRSLVREIHSLGDIGVRLEV 188

Query: 446 LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
             +  +LA   VR  L+D+I+  Q  D  + K  +     + K      +GVLR    +Y
Sbjct: 189 AETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPRGRKGKMFTKGTDGVLRYGTRLY 248

Query: 266 V 264
           V
Sbjct: 249 V 249



 Score = 74.7 bits (182), Expect(2) = 8e-28
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = -1

Query: 250 LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYENQ 80
           L R I+ EA+ + Y++H GA KMY+DL+  YWW  + R + EFV   LV   QQVK E+Q
Sbjct: 255 LRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLV--CQQVKAEHQ 312

Query: 79  RPSDVSQSMSIPE*KKERIAMDFI 8
           +P+ + Q + +PE K E IAMDF+
Sbjct: 313 KPAGLLQPLPVPEWKWEHIAMDFV 336


>gb|EOY03075.1| CCHC-type integrase [Theobroma cacao]
          Length = 246

 Score = 75.1 bits (183), Expect(2) = 8e-28
 Identities = 50/121 (41%), Positives = 68/121 (56%)
 Frame = -3

Query: 626 KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
           +LLKDYD TI YHP K N++ADALSRK  SMG LAH+ I       E+ SL +  VRL++
Sbjct: 2   ELLKDYDYTILYHPGKANVVADALSRK--SMGSLAHISIGRRSLVREIHSLGDIGVRLEV 59

Query: 446 LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
             +  +LA   VR  L+D+I+  Q  D  + K  +     + K      +GVLR    +Y
Sbjct: 60  AETNALLAHFRVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGIDGVLRYGTRLY 119

Query: 266 V 264
           V
Sbjct: 120 V 120



 Score = 75.1 bits (183), Expect(2) = 8e-28
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = -1

Query: 250 LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYENQ 80
           L R I+ EA+ + Y++H GA KMY+DL+  YWW  + R + EFV   LV   QQVK E+Q
Sbjct: 126 LRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLV--CQQVKVEHQ 183

Query: 79  RPSDVSQSMSIPE*KKERIAMDFI 8
           +P+ + Q + +PE K E IAMDF+
Sbjct: 184 KPAGLLQPLPVPEWKWEHIAMDFV 207


>gb|EOY08659.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 937

 Score = 75.1 bits (183), Expect(2) = 2e-27
 Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = -1

Query: 250 LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYENQ 80
           L R I+ EA+ + Y+IH GA KMY+DL+  YWW  + R + EFV   LV   QQVK E+Q
Sbjct: 485 LRREILEEAHMAAYVIHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLV--CQQVKAEHQ 542

Query: 79  RPSDVSQSMSIPE*KKERIAMDFI 8
           +P+ + Q + +PE K E IAMDF+
Sbjct: 543 KPAGLLQPLPVPEWKWEHIAMDFV 566



 Score = 73.6 bits (179), Expect(2) = 2e-27
 Identities = 49/121 (40%), Positives = 68/121 (56%)
 Frame = -3

Query: 626 KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
           +LLKDYD TI +HP K N++ADALSRK  SMG LAH+ I       E+ SL +  VRL++
Sbjct: 361 ELLKDYDCTILHHPGKANVVADALSRK--SMGSLAHISIGRRSLVKEIHSLGDIGVRLEV 418

Query: 446 LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
             +  +LA   VR  L+D+I+  Q  D  + K  +     + K      +GVLR    +Y
Sbjct: 419 AETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPRGKKGKMFTKGTDGVLRYGTRLY 478

Query: 266 V 264
           V
Sbjct: 479 V 479


>gb|EOX94130.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1401

 Score = 74.3 bits (181), Expect(2) = 5e-27
 Identities = 49/121 (40%), Positives = 67/121 (55%)
 Frame = -3

Query: 626  KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
            +LLKDYD TI YHP K N++AD LSRK  SMG LAH+ I       E+ SL +  VRL++
Sbjct: 896  ELLKDYDCTILYHPGKANVVADVLSRK--SMGSLAHISIGRRSLVREIHSLGDIGVRLEV 953

Query: 446  LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
              +  +LA   VR  L+D+I+  Q  D  + K  +     + K      +GVLR    +Y
Sbjct: 954  AETNALLAHFRVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLY 1013

Query: 266  V 264
            V
Sbjct: 1014 V 1014



 Score = 73.2 bits (178), Expect(2) = 5e-27
 Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = -1

Query: 250  LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYENQ 80
            L R I+ EA+ + Y++H GA KMY+DL+  YWW  + R + EFV   LV   QQVK E+Q
Sbjct: 1020 LRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLV--CQQVKAEHQ 1077

Query: 79   RPSDVSQSMSIPE*KKERIAMDFI 8
            +P+ + Q + +P+ K E IAMDF+
Sbjct: 1078 KPAGLLQPLPVPKWKWEHIAMDFV 1101


>gb|EOY08454.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1400

 Score = 74.3 bits (181), Expect(2) = 1e-26
 Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
 Frame = -1

Query: 250  LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYENQ 80
            L R I+ EA+   Y++H GA KMY+DL+  YWW  + R + EFV   LV   QQVK E+Q
Sbjct: 1026 LRREILEEAHMVAYVVHPGATKMYQDLKEVYWWEELKRDVAEFVSKCLV--CQQVKAEHQ 1083

Query: 79   RPSDVSQSMSIPE*KKERIAMDFI 8
            +P+ + Q + +PE K E IAMDF+
Sbjct: 1084 KPAGLLQPLPVPEWKWEHIAMDFV 1107



 Score = 71.6 bits (174), Expect(2) = 1e-26
 Identities = 47/121 (38%), Positives = 67/121 (55%)
 Frame = -3

Query: 626  KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
            +LLKDYD TI YHP K +++ADAL +K  SMG LAH+ I       E+ SL +  VRL++
Sbjct: 902  ELLKDYDCTILYHPGKASVVADALGQK--SMGSLAHISICRRSLVREIHSLGDMGVRLEV 959

Query: 446  LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
              +  +LA   VR  L+D+I+  Q  D  + K  +     + K      +GVLR    +Y
Sbjct: 960  AETNALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPRGRKGKMFTKGTDGVLRYGTRLY 1019

Query: 266  V 264
            V
Sbjct: 1020 V 1020


>gb|EOY20325.1| Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma
           cacao]
          Length = 460

 Score = 74.7 bits (182), Expect(2) = 1e-26
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = -1

Query: 250 LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYENQ 80
           L R I+ EA+ + Y++H GA KMY+DL+  YWW  + R + EFV   LV   QQVK E+Q
Sbjct: 218 LRREILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLV--CQQVKAEHQ 275

Query: 79  RPSDVSQSMSIPE*KKERIAMDFI 8
           +P+ + Q + +PE K E IAMDF+
Sbjct: 276 KPAGLLQPLPVPEWKWEHIAMDFV 299



 Score = 71.2 bits (173), Expect(2) = 1e-26
 Identities = 47/118 (39%), Positives = 65/118 (55%)
 Frame = -3

Query: 617 KDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDILNS 438
           +DYD TI YHP K N++ADALSRK  SMG LAH+ I       E+ SL +  VRL++  +
Sbjct: 97  RDYDCTILYHPGKANVVADALSRK--SMGSLAHISIGRRSLVREIHSLGDIGVRLEVAET 154

Query: 437 CRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVYV 264
             +LA   VR  L+D+I+  Q  D  + K  +     + K      +GVLR    +YV
Sbjct: 155 NALLAHFRVRPILMDRIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLYV 212


>emb|CAJ65807.1| polyprotein [Citrus sinensis]
          Length = 533

 Score = 80.5 bits (197), Expect(2) = 3e-26
 Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
 Frame = -1

Query: 253 DLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV---LV*NYQQVKYEN 83
           +L + IM EA+ S Y +H G+ KMYR LR HYWW  M R I EFV   LV   QQ+K E+
Sbjct: 355 ELKKEIMEEAHCSAYAMHPGSTKMYRTLRDHYWWQGMKREIAEFVSRCLV--CQQIKAEH 412

Query: 82  QRPSDVSQSMSIPE*KKERIAMDFI 8
           QRP+  SQ + IPE K E I MDF+
Sbjct: 413 QRPAGFSQPLPIPEWKWEHITMDFV 437



 Score = 64.7 bits (156), Expect(2) = 3e-26
 Identities = 41/113 (36%), Positives = 65/113 (57%)
 Frame = -3

Query: 626 KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
           +L+KDYD TI +HP K N++ADALSRK+ S   +AHL        +E++SL    V L++
Sbjct: 235 ELIKDYDCTIDFHPGKANVVADALSRKSFSS--IAHLRGTYMPLLIELRSLG---VELEV 289

Query: 446 LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVL 288
            N   ++A   VR +L+D++   Q  D++L K+++ V         +   GVL
Sbjct: 290 DNCRALIANFRVRPTLIDKVHQMQDQDLQLLKLKENVQKDLRTDFAVRDNGVL 342


>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score = 84.7 bits (208), Expect(2) = 4e-26
 Identities = 46/94 (48%), Positives = 57/94 (60%), Gaps = 6/94 (6%)
 Frame = -1

Query: 271  YMSRFC-----DLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFVL-V* 110
            Y  R C      L   +M EA+ SRY +H G+ KMYRDLR  YWW  M + I EFV    
Sbjct: 1161 YQGRLCVPMVDGLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWWNGMKKGIAEFVAKCP 1220

Query: 109  NYQQVKYENQRPSDVSQSMSIPE*KKERIAMDFI 8
            N QQVK E+QRP  ++Q++ +PE K E I MDFI
Sbjct: 1221 NCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFI 1254



 Score = 59.7 bits (143), Expect(2) = 4e-26
 Identities = 40/121 (33%), Positives = 62/121 (51%)
 Frame = -3

Query: 626  KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
            +LLKDYD++I YHP K N++AD+LSR  +SMG   H+         ++  LA   VR   
Sbjct: 1049 ELLKDYDLSILYHPGKANVVADSLSR--LSMGSTTHIEEGRRELAKDMHRLACLGVRFTD 1106

Query: 446  LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
                 I    +  SSL+ +++  Q  D  L +++  V    +      G+GVLR +G + 
Sbjct: 1107 STEGGIAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLC 1166

Query: 266  V 264
            V
Sbjct: 1167 V 1167


>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score = 84.7 bits (208), Expect(2) = 4e-26
 Identities = 46/94 (48%), Positives = 57/94 (60%), Gaps = 6/94 (6%)
 Frame = -1

Query: 271  YMSRFC-----DLMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFVL-V* 110
            Y  R C      L   +M EA+ SRY +H G+ KMYRDLR  YWW  M + I EFV    
Sbjct: 1155 YQGRLCVPMVDGLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWWNGMKKGIAEFVAKCP 1214

Query: 109  NYQQVKYENQRPSDVSQSMSIPE*KKERIAMDFI 8
            N QQVK E+QRP  ++Q++ +PE K E I MDFI
Sbjct: 1215 NCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFI 1248



 Score = 59.7 bits (143), Expect(2) = 4e-26
 Identities = 40/121 (33%), Positives = 62/121 (51%)
 Frame = -3

Query: 626  KLLKDYDMTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDI 447
            +LLKDYD++I YHP K N++AD+LSR  +SMG   H+         ++  LA   VR   
Sbjct: 1043 ELLKDYDLSILYHPGKANVVADSLSR--LSMGSTTHIEEGRRELAKDMHRLACLGVRFTD 1100

Query: 446  LNSCRILACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVY 267
                 I    +  SSL+ +++  Q  D  L +++  V    +      G+GVLR +G + 
Sbjct: 1101 STEGGIAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLC 1160

Query: 266  V 264
            V
Sbjct: 1161 V 1161


>ref|XP_004234875.1| PREDICTED: uncharacterized protein LOC101266912 [Solanum
           lycopersicum]
          Length = 150

 Score = 91.7 bits (226), Expect(2) = 6e-26
 Identities = 56/114 (49%), Positives = 70/114 (61%)
 Frame = -3

Query: 605 MTIFYHPCKVNMLADALSRKAVSMGYLAHLIIF*HLFTLEVKSLANRFVRLDILNSCRIL 426
           MTI YH  K N++A+ALS+KA+SMG LA L    H    +V+SLAN FVRLDI  S    
Sbjct: 1   MTINYHSGKANVVAEALSQKAMSMGSLAMLQGREHPLARDVQSLANSFVRLDISES---- 56

Query: 425 ACVEVRSSLLDQIQTHQYDDIKLCKIRDKVMSGEIKKAMIDGEGVLRIKGSVYV 264
                      +I+  Q+DD  L KIRD V+ GE K A++D EGVLRIKG + V
Sbjct: 57  ----------GKIRAQQFDDCDLFKIRDTVLKGEAKTAILDSEGVLRIKGRISV 100



 Score = 52.4 bits (124), Expect(2) = 6e-26
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = -1

Query: 250 LMRLIM*EAYKSRYLIHSGAIKMYRDLR*HYWWGRMNRHIVEFV 119
           L RLIM EA+ SR  IH G+ K+Y DL+ HYW  RM R IV+FV
Sbjct: 106 LTRLIMEEAHSSRNSIHPGSTKIYLDLKQHYWLCRMKRDIVDFV 149