BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00036518
         (1119 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004239452.1| PREDICTED: uncharacterized protein LOC101259...   140   5e-38
ref|XP_004231364.1| PREDICTED: uncharacterized protein LOC101245...   140   4e-36
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia...   132   9e-35
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...   127   9e-34
ref|XP_004235138.1| PREDICTED: uncharacterized protein LOC101243...   148   4e-33
ref|XP_004228785.1| PREDICTED: uncharacterized protein LOC101255...   146   1e-32
gb|ABI34293.1| Integrase core domain containing protein [Solanum...   127   4e-32
ref|XP_004252107.1| PREDICTED: uncharacterized protein LOC101259...   142   2e-31
gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arab...   121   5e-31
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi...   123   2e-30
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ...   121   2e-30
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   120   3e-30
gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]               120   3e-30
emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]   112   3e-30
emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]   123   7e-30
emb|CAN60374.1| hypothetical protein VITISV_001215 [Vitis vinifera]   117   1e-29
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf...   117   2e-29
gb|AAL78658.1|AF405555_1 Hopscotch polyprotein [Fagus sylvatica]      122   4e-29
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi...   120   6e-29
emb|CAN73437.1| hypothetical protein VITISV_031733 [Vitis vinifera]   112   6e-29

>ref|XP_004239452.1| PREDICTED: uncharacterized protein LOC101259633 [Solanum
            lycopersicum]
          Length = 1105

 Score =  140 bits (353), Expect(2) = 5e-38
 Identities = 62/103 (60%), Positives = 81/103 (78%)
 Frame = -2

Query: 980  PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
            P+TPQQNS+ ERKH++LLET+  LLFQSKLP+KYWG+CI+T+TY+INR+PS+ LQN  P+
Sbjct: 746  PYTPQQNSIVERKHRYLLETARALLFQSKLPTKYWGDCILTSTYLINRIPSTFLQNKCPY 805

Query: 800  EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            E L+   P Y+ L+SFGC C+   PKV RDK  PR  P +F+G
Sbjct: 806  EMLYKEKPKYSQLRSFGCLCYPTLPKVHRDKL-PRTTPHIFIG 847



 Score = 45.4 bits (106), Expect(2) = 5e-38
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = -3

Query: 688 HVFF*VLSGKKGYKFLNLNTHSVLFSRDVLFHEHILPYSSPS 563
           H+F    SG KGYK ++L T  +  SRDV+FHE I P+S  S
Sbjct: 843 HIFIGYPSGIKGYKVMSLATSKIQISRDVIFHEDIFPFSFSS 884



 Score = 93.2 bits (230), Expect = 2e-16
 Identities = 62/164 (37%), Positives = 87/164 (53%), Gaps = 38/164 (23%)
 Frame = -2

Query: 380  LDPAPSHPI----TSIP-PSFPLRQSIRIKDKPFYLSDYICSAIQL------TTLPSNSK 234
            L+P P HP     T +P P  P R+S R    P +L DY+ S   L       T+P+ ++
Sbjct: 923  LNPQPIHPSPPIQTDVPIPPIPQRKSNRETKIPCHLKDYVLSFPNLKNNSVSNTIPNTNQ 982

Query: 233  --------------------VSTSEIHMH------EPQNYQQAASHPAWQEVMLQEFKTL 132
                                 STS++ +       EP +Y++AA  PAWQ+ M QEF  L
Sbjct: 983  NSLISNALLSKYNHINSDAIASTSQVLVENICCDSEPHSYEEAALIPAWQKAMEQEFDAL 1042

Query: 131  DVNQTWDLVPLP-HKKPISYK*VYKIKQKSDGSVERYKAKLVIR 3
              N+TWDLV LP  K+ I  K VYK+K K+DGS+ER+KA+LV++
Sbjct: 1043 HANRTWDLVILPVDKQDIGCKWVYKVKHKADGSIERFKARLVVK 1086


>ref|XP_004231364.1| PREDICTED: uncharacterized protein LOC101245809 [Solanum
           lycopersicum]
          Length = 1094

 Score =  140 bits (353), Expect(2) = 4e-36
 Identities = 62/103 (60%), Positives = 77/103 (74%)
 Frame = -2

Query: 980 PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
           P+TPQQN V ERKHKHLLET+  LLFQSKLP KYWGECI+ ATY+INRLPS++L    P+
Sbjct: 681 PYTPQQNGVVERKHKHLLETARALLFQSKLPVKYWGECILCATYIINRLPSTVLNQKCPY 740

Query: 800 EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
           E L+   P Y+H++SFGC C+   P   R KF+PR  P +F+G
Sbjct: 741 EVLYFRKPLYSHMRSFGCLCYPTVPIPHRAKFEPRTTPHIFIG 783



 Score = 39.3 bits (90), Expect(2) = 4e-36
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -3

Query: 688 HVFF*VLSGKKGYKFLNLNTHSVLFSRDVLFHEHILPYS 572
           H+F       KGYK L+++T  +   RDV+FHE++ P+S
Sbjct: 779 HIFIGYPHETKGYKVLSMSTGKIHVCRDVIFHENVFPFS 817



 Score = 85.9 bits (211), Expect = 3e-14
 Identities = 57/158 (36%), Positives = 80/158 (50%), Gaps = 32/158 (20%)
 Frame = -2

Query: 380  LDPAPSHPITSIPPSFPL----RQSIRIKDKPFYLSDYICSAIQL--------TTLPSNS 237
            L P  + P  SI P+  L    R+S R    P +++DY+ S   L         T PS  
Sbjct: 864  LSPNLAVPSPSISPAPSLINQPRRSTRCHKLPKHMNDYVHSIPLLKPPVSQTTNTTPSLQ 923

Query: 236  KVSTSEIHM-------------------HEPQNYQQAASHPAWQEVMLQEFKTLDVNQTW 114
             + ++  H+                    EP +Y++A   PAWQ  M QEF  L +N TW
Sbjct: 924  VLFSNHHHLAHSALIPTSQDVVRNVCIDREPTSYEEAVIDPAWQAAMTQEFDALHLNHTW 983

Query: 113  DLVPLPH-KKPISYK*VYKIKQKSDGSVERYKAKLVIR 3
            DLVPLP  KK I  + VYK+K K+DG++ER KA+LV++
Sbjct: 984  DLVPLPFGKKAIGCRWVYKVKHKADGTIERLKARLVVK 1021


>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7268497|emb|CAB78748.1| retrotransposon like protein
            [Arabidopsis thaliana]
          Length = 1433

 Score =  132 bits (333), Expect(2) = 9e-35
 Identities = 56/103 (54%), Positives = 76/103 (73%)
 Frame = -2

Query: 980  PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
            P TP+QNSV ERKH+H+L  +  LLFQS +P ++WG+C++TA ++INRLP+ +L N SP+
Sbjct: 692  PETPEQNSVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSPY 751

Query: 800  EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            EKL   PP+Y  LK+FGC C++      R KF+PRA  CVFLG
Sbjct: 752  EKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLG 794



 Score = 42.4 bits (98), Expect(2) = 9e-35
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -3

Query: 664 GKKGYKFLNLNTHSVLFSRDVLFHEHILPYSS 569
           G KGYK L++ TH+V  SR V+FHE I P+ S
Sbjct: 798 GYKGYKLLDIETHAVSISRHVIFHEDIFPFIS 829



 Score = 66.6 bits (161), Expect = 2e-08
 Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
 Frame = -2

Query: 386  TILDPAPSHPITS---IPPSFPLRQSIRIKDKPFYLSDYICSAIQLTTLPSNSKVSTSEI 216
            +I+D  P   ++S   + P  PL  S R K  P +L D+ C     TT P ++ ++    
Sbjct: 858  SIIDTHPHQDVSSSKALVPFDPL--SKRQKKPPKHLQDFHC--YNNTTEPFHAFINNIT- 912

Query: 215  HMHEPQNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLP-HKKPISYK*VYKIKQKSDG 39
            +   PQ Y +A    AW + M +E   +    TW +V LP +KK I  K V+ IK  +DG
Sbjct: 913  NAVIPQRYSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADG 972

Query: 38   SVERYKAKLVIR 3
            S+ERYKA+LV +
Sbjct: 973  SIERYKARLVAK 984


>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
           (gb|U12626) [Arabidopsis thaliana]
          Length = 1315

 Score =  127 bits (318), Expect(2) = 9e-34
 Identities = 56/103 (54%), Positives = 72/103 (69%)
 Frame = -2

Query: 980 PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
           P TPQQNSV ERKH+H+L  + +L FQS +P  YWG+CI+TA Y+INRLP+ IL++  P 
Sbjct: 555 PETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPILEDKCPF 614

Query: 800 EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
           E L  T P+Y+H+K FGC C+A      R KF PRA  C F+G
Sbjct: 615 EVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIG 657



 Score = 44.7 bits (104), Expect(2) = 9e-34
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = -3

Query: 667 SGKKGYKFLNLNTHSVLFSRDVLFHEHILPY 575
           SG KGYK L+L THS++ SR V+FHE + P+
Sbjct: 660 SGFKGYKLLDLETHSIIVSRHVVFHEELFPF 690



 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
 Frame = -2

Query: 368  PSHPITSIPPSFPLRQSIRIKDKPFYLSDYICSAIQLTTLPSNSK-VSTSEIH------- 213
            PS   T+  P   ++ S R   KP YL DY C ++  +T     K +S   I+       
Sbjct: 733  PSANPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDPYLTFL 792

Query: 212  -----MHEPQNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLP-HKKPISYK*VYKIKQ 51
                   EP NY +A     W++ M  EF  L+   TW++  LP  K+ I  + ++KIK 
Sbjct: 793  ACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWIFKIKY 852

Query: 50   KSDGSVERYKAKLV 9
             SDGSVERYKA+LV
Sbjct: 853  NSDGSVERYKARLV 866


>ref|XP_004235138.1| PREDICTED: uncharacterized protein LOC101243773 [Solanum
            lycopersicum]
          Length = 957

 Score =  148 bits (373), Expect = 4e-33
 Identities = 65/103 (63%), Positives = 83/103 (80%)
 Frame = -2

Query: 980  PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
            P+TPQQN V ERKHK+LLET+ +LLFQSKLP +YWGEC++TATY+INRLP+ +LQN SP+
Sbjct: 750  PYTPQQNGVVERKHKYLLETARSLLFQSKLPLRYWGECVLTATYIINRLPTKLLQNKSPY 809

Query: 800  EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            E L+   P+Y+HLKSFGC C     K  +DKF+PR IP +F+G
Sbjct: 810  EILYLKQPTYSHLKSFGCLCFPTVLKTHKDKFEPRTIPHIFVG 852


>ref|XP_004228785.1| PREDICTED: uncharacterized protein LOC101255821 [Solanum
            lycopersicum]
          Length = 1125

 Score =  146 bits (369), Expect = 1e-32
 Identities = 65/103 (63%), Positives = 81/103 (78%)
 Frame = -2

Query: 980  PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
            P+TPQQN V ERKHK+LLET+  LLFQSKLP +YWGEC++TA Y+INRLP+ +LQN SP+
Sbjct: 757  PYTPQQNGVVERKHKYLLETARALLFQSKLPLRYWGECVLTAIYIINRLPTKLLQNKSPY 816

Query: 800  EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            E L+   P+Y+HLKSFGC C     K  +DKF+PR IP VF+G
Sbjct: 817  ETLYLKQPTYSHLKSFGCLCFPTVLKTHKDKFEPRGIPHVFVG 859



 Score = 89.4 bits (220), Expect = 2e-15
 Identities = 57/145 (39%), Positives = 78/145 (53%), Gaps = 17/145 (11%)
 Frame = -2

Query: 386  TILDPAPSHPITSIPPSFPLRQSIRIKDKPFYLSDYICSAIQLTTLPS----------NS 237
            T +    S   T+  P  P R S R  + P YL DY  +  +L +L +          NS
Sbjct: 948  TNIHETTSADFTTQVPQEPRRTS-RTINTPSYLKDYTYNLPKLHSLNTFVSHNNHVCFNS 1006

Query: 236  KVSTSE------IHMHEPQNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLP-HKKPIS 78
              S S+       H  EP  +++A  HPAWQ+ M  EF+ L  N TW++V LP  KK I 
Sbjct: 1007 LCSDSQQLVTTISHECEPNTFEEAILHPAWQQAMTHEFEALHANDTWEMVMLPDEKKAIG 1066

Query: 77   YK*VYKIKQKSDGSVERYKAKLVIR 3
             K VYKIK K+DGS+ER+KA+LV++
Sbjct: 1067 CKWVYKIKHKADGSIERFKARLVVK 1091


>gb|ABI34293.1| Integrase core domain containing protein [Solanum demissum]
          Length = 716

 Score =  127 bits (319), Expect(2) = 4e-32
 Identities = 59/103 (57%), Positives = 74/103 (71%)
 Frame = -2

Query: 980 PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
           P+TPQQN V ERKHKH+LET+  + FQS LP K+WG CI  A YVINR+PS +LQN+SP 
Sbjct: 414 PYTPQQNGVVERKHKHILETARAIRFQSCLPLKFWGHCIEAAVYVINRIPSLVLQNMSPF 473

Query: 800 EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
           E LHG  PS  H++  GC C+A +  + +DKF PRA+  V LG
Sbjct: 474 EVLHGHDPSLAHMRVIGCLCYA-STLLKQDKFAPRAVKSVLLG 515



 Score = 38.9 bits (89), Expect(2) = 4e-32
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -3

Query: 661 KKGYKFLNLNTHSVLFSRDVLFHEHILPYS 572
           KKGYK  NL+T S+  SRDV+F+E   P++
Sbjct: 520 KKGYKLYNLSTKSIFISRDVVFYEDNFPFA 549


>ref|XP_004252107.1| PREDICTED: uncharacterized protein LOC101259219 [Solanum
            lycopersicum]
          Length = 986

 Score =  142 bits (358), Expect = 2e-31
 Identities = 61/103 (59%), Positives = 80/103 (77%)
 Frame = -2

Query: 980  PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
            P+TPQQN V ERKHK+LLET+  LLFQSKLP +YWGEC++TATY+INRLP+ +LQ  SP+
Sbjct: 751  PYTPQQNGVVERKHKYLLETARALLFQSKLPMRYWGECVLTATYLINRLPTKLLQGKSPY 810

Query: 800  EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            E L+   P Y+HLK+FGC C     K  ++KF+PR +P +F+G
Sbjct: 811  ELLYQKKPFYSHLKNFGCLCFPTTLKTHKEKFEPRTVPHIFIG 853


>gb|AAG10817.1|AC011808_5 Putative retroelement polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  121 bits (304), Expect(2) = 5e-31
 Identities = 54/103 (52%), Positives = 69/103 (66%)
 Frame = -2

Query: 980 PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
           P TP+QNSV ERKH+H+L  +  LLFQS++P  YWG+CI+TA ++INR PS ++ N +  
Sbjct: 682 PETPEQNSVVERKHQHILNVARALLFQSQIPLSYWGDCILTAVFIINRTPSPVISNKTLF 741

Query: 800 EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
           E L    P Y HLKSFGC C+A      R KF+ RA  C FLG
Sbjct: 742 EMLTKKVPDYTHLKSFGCLCYASTSPKQRHKFEDRARTCAFLG 784



 Score = 40.8 bits (94), Expect(2) = 5e-31
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
 Frame = -3

Query: 667 SGKKGYKFLNLNTHSVLFSRDVLFHEHILPY------SSPSTYLFPY 545
           SG KGYK L+L +H++  SR+V+F+E + P+      +  S+  FP+
Sbjct: 787 SGYKGYKLLDLESHTIFISRNVVFYEDLFPFKTKPAENEESSVFFPH 833



 Score = 71.2 bits (173), Expect = 7e-10
 Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 18/143 (12%)
 Frame = -2

Query: 377  DPAPSHPI----TSIPPSFPLRQSIRIKDKPFYLSDYICSAIQLTTLPSNSKV----STS 222
            D  PS P+    TS       +Q+ R+   P YL DY C+++  +T    S+V    S S
Sbjct: 840  DSHPSQPLPVQETSASNVPAEKQNSRVSRPPAYLKDYHCNSVTSSTDHPISEVLSYSSLS 899

Query: 221  EIHM---------HEPQNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLP-HKKPISYK 72
            + +M          EP  Y QA     W + M  E   L+ N TW +  LP  KK +  K
Sbjct: 900  DPYMIFINAVNKIPEPHTYAQARQIKEWCDAMGMEITALEDNGTWVVCSLPVGKKAVGCK 959

Query: 71   *VYKIKQKSDGSVERYKAKLVIR 3
             VYKIK  +DGS+ERYKA+LV +
Sbjct: 960  WVYKIKLNADGSLERYKARLVAK 982


>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1454

 Score =  123 bits (308), Expect(2) = 2e-30
 Identities = 52/103 (50%), Positives = 73/103 (70%)
 Frame = -2

Query: 980  PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
            P TP+QNSV ERKH+H+L  +  L+FQS++P   WG+C++TA ++INR PS +L N +P+
Sbjct: 706  PETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPY 765

Query: 800  EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            E L GT P Y  L++FGC C++      R KFQPR+  C+FLG
Sbjct: 766  EILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLG 808



 Score = 37.7 bits (86), Expect(2) = 2e-30
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = -3

Query: 667 SGKKGYKFLNLNTHSVLFSRDVLFHEHILP 578
           SG KGYK ++L +++V  SR+V FHE + P
Sbjct: 811 SGYKGYKLMDLESNTVFISRNVQFHEEVFP 840



 Score = 65.1 bits (157), Expect = 5e-08
 Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 14/132 (10%)
 Frame = -2

Query: 356  ITSIPPSFPLRQSIRIKDKPFYLSDYICSAIQ------LTTLPSNSKVSTSEI------- 216
            I+ +PP      S R++  P +L+DY C+ +Q      +++  S SK+S S +       
Sbjct: 879  ISDLPPQI---SSQRVRKPPAHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNIT 935

Query: 215  HMHEPQNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLPH-KKPISYK*VYKIKQKSDG 39
             +  P NY +A     W E +  E   ++   TW++  LP  KK +  K V+ +K  +DG
Sbjct: 936  KIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADG 995

Query: 38   SVERYKAKLVIR 3
            ++ERYKA+LV +
Sbjct: 996  NLERYKARLVAK 1007


>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. viridis]
          Length = 1131

 Score =  121 bits (304), Expect(2) = 2e-30
 Identities = 53/103 (51%), Positives = 72/103 (69%)
 Frame = -2

Query: 980 PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
           P T +QNSV ERKH+HLL  +  L+FQS++P +YWG+C++TA ++INR PS +L N SP+
Sbjct: 666 PETLEQNSVLERKHQHLLNVARALMFQSQVPLQYWGDCVLTAAFLINRTPSPLLANKSPY 725

Query: 800 EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
           E L G  P Y+ L++FGC C+       R KF PR+  CVFLG
Sbjct: 726 EVLMGKAPQYDQLRTFGCLCYGSTSPKQRHKFMPRSRACVFLG 768



 Score = 38.9 bits (89), Expect(2) = 2e-30
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = -3

Query: 685 VFF*VLSGKKGYKFLNLNTHSVLFSRDVLFHEHILPYS------SPSTYLFPYDVS 536
           VF    SG KGYK L+L ++ +  SR+V FHE I P +        S + FP  V+
Sbjct: 765 VFLGYPSGYKGYKLLDLESNKIYISRNVTFHEDIFPMAKHQKMDESSLHFFPPKVT 820



 Score = 69.3 bits (168), Expect = 3e-09
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 16/138 (11%)
 Frame = -2

Query: 374  PAP---SHPITSIPPSFPLRQSIRIKDKPFYLSDYICSAIQLTTLPSNSKVSTSEIHMHE 204
            P+P   S P +++ P    RQ    +  P +L D+ C ++  +  P +S +S S+I  H 
Sbjct: 825  PSPNISSSPFSTLSPQISKRQ----RTVPAHLKDFHCYSVHDSAYPISSTLSYSQISSHH 880

Query: 203  ------------PQNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLPH-KKPISYK*VY 63
                        PQ+Y +      W E   +E   ++ N TWD+VPLP  KK I  + V+
Sbjct: 881  LAYINSITNIPIPQSYAEVRQSKEWTESADKELDAMEENDTWDVVPLPKGKKAIGCRWVH 940

Query: 62   KIKQKSDGSVERYKAKLV 9
             +K  +DG++ER K++LV
Sbjct: 941  TLKFNADGTLERRKSRLV 958


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  120 bits (301), Expect(2) = 3e-30
 Identities = 53/103 (51%), Positives = 70/103 (67%)
 Frame = -2

Query: 980  PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
            P TPQQNSV ERKH+H+L  +  L+F++ +P ++WG+CI++A ++INRLP+ +L N SP 
Sbjct: 734  PETPQQNSVVERKHQHILNVARALMFEANMPLEFWGDCILSAVFLINRLPTPLLSNKSPF 793

Query: 800  EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            E LH   P Y  LK FGC C+       R KF PRA  CVFLG
Sbjct: 794  ELLHLKVPDYTSLKVFGCLCYESTSPQQRHKFAPRARACVFLG 836



 Score = 39.7 bits (91), Expect(2) = 3e-30
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = -3

Query: 685 VFF*VLSGKKGYKFLNLNTHSVLFSRDVLFHEHILPYSSPSTYLFPYDV 539
           VF    SG KGYK L+L T+++  SR V+F+E + P++  +  + P DV
Sbjct: 833 VFLGYPSGYKGYKLLDLETNTIHISRHVVFYETVFPFTDKT--IIPRDV 879



 Score = 68.9 bits (167), Expect = 3e-09
 Identities = 48/143 (33%), Positives = 66/143 (46%), Gaps = 21/143 (14%)
 Frame = -2

Query: 368  PSHPITSIPPSF----PLRQSIRIKDKPFYLSDYICSAIQLTT----LPSNSKVSTSEIH 213
            P H     PPS     P   S R    P YL DY C+A+   T     P N+ ++ +++ 
Sbjct: 885  PVHENIENPPSTSESAPKVSSKRESRPPGYLQDYFCNAVPDVTKDVRYPLNAYINYTQLS 944

Query: 212  MH------------EPQNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLPH-KKPISYK 72
                          EP  Y QA     W + M  E   L+   TW +  LP  KKPI  K
Sbjct: 945  EEFTAYICAVNKYPEPCTYAQAKKIKEWLDAMEIEIDALESTNTWSVCSLPQGKKPIGCK 1004

Query: 71   *VYKIKQKSDGSVERYKAKLVIR 3
             V+K+K  +DGS+ER+KA+LV +
Sbjct: 1005 WVFKVKLNADGSLERFKARLVAK 1027


>gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]
          Length = 1436

 Score =  120 bits (300), Expect(2) = 3e-30
 Identities = 51/103 (49%), Positives = 71/103 (68%)
 Frame = -2

Query: 980  PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
            P TP+QN V ERKH+HLL  +  L+FQS +P +YWG+C++TA ++INRL S ++ N +P+
Sbjct: 707  PETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPY 766

Query: 800  EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            E+L    P Y+ LK+FGC C+       R KF PRA  C+FLG
Sbjct: 767  ERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLG 809



 Score = 40.0 bits (92), Expect(2) = 3e-30
 Identities = 17/32 (53%), Positives = 24/32 (75%)
 Frame = -3

Query: 664 GKKGYKFLNLNTHSVLFSRDVLFHEHILPYSS 569
           G KGYK L++ T+SV  SR V+F+E I P++S
Sbjct: 813 GYKGYKLLDIETYSVSISRHVIFYEDIFPFAS 844


>emb|CAN82526.1| hypothetical protein VITISV_028058 [Vitis vinifera]
          Length = 1125

 Score =  112 bits (281), Expect(2) = 3e-30
 Identities = 50/102 (49%), Positives = 70/102 (68%)
 Frame = -2

Query: 977 HTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPHE 798
           +TPQQN V ERKH+H+LE++    FQ+ LP  +W EC+ TA ++INRLP+ +L   +P E
Sbjct: 401 YTPQQNGVVERKHRHILESARAFXFQAHLPLPFWAECVSTAVHIINRLPTPLLSRQTPFE 460

Query: 797 KLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
           +L+G  PSY+H++ FGC  +A    V   KF PRA  C+FLG
Sbjct: 461 RLYGKLPSYSHIRVFGCLAYATNVHVPH-KFAPRAKRCIFLG 501



 Score = 47.0 bits (110), Expect(2) = 3e-30
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
 Frame = -3

Query: 664 GKKGYKFLNLNTHSVLFSRDVLFHEHILPYS---SPSTYLFPYDVSH 533
           G+K YK  +L+TH +  SRDV+FHE I PY    SPS+   P+ +SH
Sbjct: 505 GQKAYKLYDLDTHQMFTSRDVVFHETIFPYESIPSPSSNSDPFLLSH 551



 Score = 87.4 bits (215), Expect = 9e-15
 Identities = 56/148 (37%), Positives = 73/148 (49%), Gaps = 27/148 (18%)
 Frame = -2

Query: 365 SHPITSIPPSFPLRQSIRIKDKPFYLSDYICSAI----QLTTLPSNSKVSTS-------E 219
           SH + S PP   LR+S R    P  L DY+C+ +     L  L S+ +  T         
Sbjct: 550 SHHLASPPPEPILRRSQRPHHPPMALRDYVCNQVTSPNHLPPLSSSPQKGTRYPLCNFVS 609

Query: 218 IHMHEPQN---------------YQQAASHPAWQEVMLQEFKTLDVNQTWDLVPL-PHKK 87
            H + PQ+               Y +A SH  WQE M  E  TL+ N TW L  L P KK
Sbjct: 610 YHRYSPQHRSFTAAVSQDIEPTSYAEATSHSHWQEAMQSELATLEANHTWSLTSLPPGKK 669

Query: 86  PISYK*VYKIKQKSDGSVERYKAKLVIR 3
           PI  + VYKIK  SDG++ER+KA+LV +
Sbjct: 670 PIGCRWVYKIKXHSDGTIERFKARLVAK 697


>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
          Length = 1262

 Score =  123 bits (309), Expect(2) = 7e-30
 Identities = 55/101 (54%), Positives = 70/101 (69%)
 Frame = -2

Query: 974 TPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPHEK 795
           TP QN   ERKH+HLL  + +L+FQSKLP  YW +C++T T++INR PSSIL N +P++ 
Sbjct: 657 TPXQNGRVERKHQHLLNVARSLMFQSKLPLSYWTDCVLTXTHLINRTPSSILNNQTPYQL 716

Query: 794 LHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
           L   PP+YN+ K FGC C A      R KFQPRA  C+FLG
Sbjct: 717 LFQKPPNYNYFKXFGCLCFASTITNNRGKFQPRATKCIFLG 757



 Score = 35.0 bits (79), Expect(2) = 7e-30
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -3

Query: 658 KGYKFLNLNTHSVLFSRDVLFHEHILPYSSPSTYLFPY 545
           KGYK L+L T     SR+V+FHE   P S P T   P+
Sbjct: 763 KGYKVLDLTTXKXFVSRNVJFHESTFP-SIPDTIHKPF 799



 Score = 79.3 bits (194), Expect = 3e-12
 Identities = 56/150 (37%), Positives = 76/150 (50%), Gaps = 28/150 (18%)
 Frame = -2

Query: 368  PSHPITSIPPSFPLRQSIRIKDKPFYLSDYIC---SAIQLTTLP---------------- 246
            P + I +   +  LR+S R K  P YL +Y C   + I L T                  
Sbjct: 840  PENTIHANNDANSLRRSERTKHLPKYLQNYYCGNMTKIDLATQAPSSCSSSGKPYYIFSF 899

Query: 245  -SNSKVSTSE-------IHMHEPQNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPL-PH 93
             S+SK+S+             EP+ Y+QA S P W+  M  E K L+ N+TWDL  L P+
Sbjct: 900  LSDSKLSSKHKAFISIISSTFEPKTYKQAVSIPHWKTAMTDEIKALEHNKTWDLAILPPN 959

Query: 92   KKPISYK*VYKIKQKSDGSVERYKAKLVIR 3
            K  I  K VY++K K+DGSVERYKA+LV +
Sbjct: 960  KTTIGCKWVYQVKFKADGSVERYKARLVAK 989


>emb|CAN60374.1| hypothetical protein VITISV_001215 [Vitis vinifera]
          Length = 1535

 Score =  117 bits (292), Expect(2) = 1e-29
 Identities = 51/102 (50%), Positives = 74/102 (72%)
 Frame = -2

Query: 977 HTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPHE 798
           +TPQQN V ERKH+H+L+ +  L FQ++LP+++WGEC +TA ++INRLPS +L   +P E
Sbjct: 696 YTPQQNGVVERKHRHILQVARALKFQAQLPTQFWGECALTAVHIINRLPSPVLSFKTPFE 755

Query: 797 KLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
           +L+  PP+Y+HL+ FGC  +A    V   KF  RAI C+F+G
Sbjct: 756 RLYLKPPTYSHLRVFGCLAYATNVHVSH-KFDHRAIACIFIG 796



 Score = 40.8 bits (94), Expect(2) = 1e-29
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = -3

Query: 664 GKKGYKFLNLNTHSVLFSRDVLFHEHILPYSS 569
           G+K YK  NL+T  +  SRDV FHE+  PY+S
Sbjct: 800 GQKAYKLFNLSTRKIFTSRDVRFHENRFPYAS 831



 Score = 66.6 bits (161), Expect = 2e-08
 Identities = 47/127 (37%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
 Frame = -2

Query: 377  DPAPSHPITSIP-PSFPLRQSIRIKDKPFYLSDYICSAIQLTTLPSNSKVSTSEIHMHEP 201
            DP+PS      P P+  LR+S R  + P  L DY+CS I                  H  
Sbjct: 968  DPSPSLLGPPQPAPTETLRRSNRSHNPPAKLQDYVCSHIT-----------------HAC 1010

Query: 200  QNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLPH-KKPISYK*VYKIKQKSDGSVERY 24
             +   +      +E M  E + L  N TW L  LP  K PI  + VYKIK +SDGS+ERY
Sbjct: 1011 SDQSPSLFPGLTKEAMRSELQALQANGTWTLTSLPTGKTPIGCRWVYKIKHRSDGSIERY 1070

Query: 23   KAKLVIR 3
            KA+LV +
Sbjct: 1071 KARLVAK 1077


>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm,
           score: 11.19) [Arabidopsis thaliana]
          Length = 1633

 Score =  117 bits (293), Expect(2) = 2e-29
 Identities = 57/102 (55%), Positives = 71/102 (69%)
 Frame = -2

Query: 977 HTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPHE 798
           +TPQQNSV ERKH+HLL  + +LLFQS +P +YW +C++TA Y+INRLPS +L N +P E
Sbjct: 649 YTPQQNSVVERKHQHLLNIARSLLFQSNVPLQYWSDCVLTAAYLINRLPSPLLDNKTPFE 708

Query: 797 KLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            L    P Y  LKS  C C+A      R+KF PRA PCVFLG
Sbjct: 709 LLLKKIPDYTLLKS--CLCYASTNVHDRNKFSPRARPCVFLG 748



 Score = 40.0 bits (92), Expect(2) = 2e-29
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = -3

Query: 685 VFF*VLSGKKGYKFLNLNTHSVLFSRDVLFHEHILPYSS 569
           VF    SG KGYK L+L +HS+  +R+V+FHE   P+ +
Sbjct: 745 VFLGYPSGYKGYKVLDLESHSISITRNVVFHETKFPFKT 783


>gb|AAL78658.1|AF405555_1 Hopscotch polyprotein [Fagus sylvatica]
          Length = 226

 Score =  122 bits (307), Expect(2) = 4e-29
 Identities = 54/103 (52%), Positives = 71/103 (68%)
 Frame = -2

Query: 980 PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
           P TP+QN VAERKH+H++ET  T+LF ++LP   W E  MTA Y+INRLPSS L + +P 
Sbjct: 85  PGTPEQNGVAERKHRHIVETGLTMLFHARLPKNLWIEAFMTAVYLINRLPSSKLAHDTPF 144

Query: 800 EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            KLHG  P YN LK FGC C        ++KF+P++ PC+F+G
Sbjct: 145 FKLHGVHPDYNSLKVFGCRCFPYLRDYAKNKFEPKSYPCIFIG 187



 Score = 33.5 bits (75), Expect(2) = 4e-29
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -3

Query: 658 KGYKFLNLNTHSVLFSRDVLFHEHILPYSSP 566
           KGY+ L+  T  V  SR V+F E ILPY+ P
Sbjct: 193 KGYRCLHPPTKRVYLSRHVVFDEGILPYTDP 223


>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1461

 Score =  120 bits (301), Expect(2) = 6e-29
 Identities = 52/103 (50%), Positives = 71/103 (68%)
 Frame = -2

Query: 980  PHTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPH 801
            P TP+QNSV ERKH+H+L  +  L+FQS +   YWG+C++TA ++INR PS++L N +P 
Sbjct: 717  PETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPF 776

Query: 800  EKLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
            E L G  P Y+ LK+FGC C++      R KF PR+  CVFLG
Sbjct: 777  EVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLG 819



 Score = 35.0 bits (79), Expect(2) = 6e-29
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = -3

Query: 664 GKKGYKFLNLNTHSVLFSRDVLFHEHILPYSS 569
           G KGYK L+L ++ V  SR+V FHE + P +S
Sbjct: 823 GFKGYKLLDLESNVVHISRNVEFHEELFPLAS 854



 Score = 59.3 bits (142), Expect = 3e-06
 Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
 Frame = -2

Query: 386  TILDPAPS-HPITSIPPSFPLRQSIRIKDK-----PFYLSDYICSAIQLT-TLPSNSKVS 228
            T +DP  S + ITS  PS  +  S +I  +     P +L DY C  +    + P +S +S
Sbjct: 867  TPMDPLSSGNSITSHLPSPQISPSTQISKRRITKFPAHLQDYHCYFVNKDDSHPISSSLS 926

Query: 227  TSEI---HMHE---------PQNYQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLPH-KK 87
             S+I   HM           PQ+Y +A     W   + QE   ++   TW++  LP  KK
Sbjct: 927  YSQISPSHMLYINNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKK 986

Query: 86   PISYK*VYKIKQKSDGSVERYKAKLVIR 3
             +  K V+ +K  +DGS+ER+KA++V +
Sbjct: 987  AVGCKWVFTVKFHADGSLERFKARIVAK 1014


>emb|CAN73437.1| hypothetical protein VITISV_031733 [Vitis vinifera]
          Length = 1322

 Score =  112 bits (280), Expect(2) = 6e-29
 Identities = 50/102 (49%), Positives = 70/102 (68%)
 Frame = -2

Query: 977 HTPQQNSVAERKHKHLLETSTTLLFQSKLPSKYWGECIMTATYVINRLPSSILQNISPHE 798
           +TPQQN V ERKH+H+LE++    FQ+ LP  +W EC+ TA ++INRLP+ +L   +P E
Sbjct: 573 YTPQQNGVVERKHRHILESARAFRFQAHLPLPFWAECVSTAVHIINRLPTPLLSRQTPFE 632

Query: 797 KLHGTPPSYNHLKSFGCFCHAIAPKVGRDKFQPRAIPCVFLG 672
           +L+G  PSY+H++ FGC  +A    V   KF PRA  C+FLG
Sbjct: 633 RLYGKLPSYSHIRVFGCLAYATNVHVPH-KFAPRAKRCIFLG 673



 Score = 43.1 bits (100), Expect(2) = 6e-29
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -3

Query: 664 GKKGYKFLNLNTHSVLFSRDVLFHEHILPYSS 569
           G+K YK  +L+TH +  SRDV+FHE I PY S
Sbjct: 677 GQKAYKLYDLDTHQMFTSRDVVFHETIFPYES 708



 Score = 85.5 bits (210), Expect = 4e-14
 Identities = 57/149 (38%), Positives = 74/149 (49%), Gaps = 27/149 (18%)
 Frame = -2

Query: 368  PSHPITSIPPSFPLRQSIRIKDKPFYLSDYICSAI----QLTTLPSNSKVSTS------- 222
            PSH   S PP   LR+S R    P  L DY+C+ +     L  L S+ +  T        
Sbjct: 756  PSH--ASPPPEPILRRSQRPHHPPMALRDYVCNQVTFPNHLPPLSSSPQKGTRYPLCNFV 813

Query: 221  EIHMHEPQN---------------YQQAASHPAWQEVMLQEFKTLDVNQTWDLVPLP-HK 90
              H + PQ+               Y +AASH  WQE M  E   L+ N TW L  LP  K
Sbjct: 814  SYHRYSPQHRSFTAAVSQDIEPTSYAEAASHSHWQEAMQSELAALEANHTWSLTSLPLGK 873

Query: 89   KPISYK*VYKIKQKSDGSVERYKAKLVIR 3
            KPI  + VYKIK+ SDG++ER+KA+LV +
Sbjct: 874  KPIGCRWVYKIKRHSDGTIERFKARLVAK 902