BLASTX nr result
ID: Atropa21_contig00035012
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00035012
(699 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 192 1e-46
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope... 167 3e-39
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 102 2e-19
ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Popu... 98 3e-18
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 98 3e-18
ref|XP_006286895.1| hypothetical protein CARUB_v10000039mg [Caps... 89 2e-15
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 87 5e-15
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 87 5e-15
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 87 5e-15
ref|XP_002871085.1| hypothetical protein ARALYDRAFT_487210 [Arab... 84 6e-14
ref|NP_196049.1| kow domain-containing transcription factor 1 [A... 83 7e-14
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe... 83 1e-13
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 81 3e-13
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 80 5e-13
ref|XP_006436520.1| hypothetical protein CICLE_v10030480mg [Citr... 79 1e-12
ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|3555218... 79 1e-12
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 79 1e-12
ref|XP_001436180.1| hypothetical protein [Paramecium tetraurelia... 79 1e-12
emb|CAI45859.1| NOWA1 protein [Paramecium tetraurelia] 79 1e-12
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 79 2e-12
>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1 [Solanum lycopersicum]
Length = 1632
Score = 192 bits (487), Expect = 1e-46
Identities = 115/238 (48%), Positives = 132/238 (55%), Gaps = 7/238 (2%)
Frame = +2
Query: 5 RDGGSSWGQKVD---KDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKK 175
+ GS+W + K GGSW +T+N + G QS SWS+W GKK
Sbjct: 1316 KPSGSAWEKASSGSVKSGGSWDMAGKTQNGAE-EGVNQSDSWSAW------------GKK 1362
Query: 176 VDEPENNPHQS----QSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTTA 343
VDEPENN QS QSGSWSS GKKVEKDGGSWD PKQ NS+SSWGKA GGGLGS TA
Sbjct: 1363 VDEPENNRQQSGSGEQSGSWSSWGKKVEKDGGSWDEPKQLNSESSWGKAPNGGGLGSATA 1422
Query: 344 EGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVEESDKQPQ 523
EGN+RLDQS+NDW+ S S DGQ +T W W
Sbjct: 1423 EGNKRLDQSVNDWSSSVSRDGQKXTNTXXLYKK---WWLEFFKRW--------------- 1464
Query: 524 WGQRRRNSRGDFKENSRGWGSASGGDWKSNRPPRSADDSNRGVNLTATRQKLDIFTAE 697
+ E S GW WK+NRP RSADDSNRG + TATRQK+D+FTAE
Sbjct: 1465 -----------WLELSEGW------QWKNNRPARSADDSNRGGHFTATRQKIDLFTAE 1505
>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1127
Score = 167 bits (423), Expect = 3e-39
Identities = 106/238 (44%), Positives = 124/238 (52%), Gaps = 7/238 (2%)
Frame = +2
Query: 5 RDGGSSWGQKVD---KDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKK 175
+ GS+W + K GGSW +T+N + G QS SWSSW GKK
Sbjct: 867 KPSGSAWEEASSGSVKSGGSWDMAGKTQNGAE-EGVNQSDSWSSW------------GKK 913
Query: 176 VDEPENNPHQS----QSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTTA 343
VDEPENN QS QSGSWS G++ +K D PKQ NS+SSWGKA GGGLGS TA
Sbjct: 914 VDEPENNRQQSGSGEQSGSWSPWGRRWKKMVVLGDEPKQLNSESSWGKAPNGGGLGSATA 973
Query: 344 EGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVEESDKQPQ 523
EGNRRLDQS+NDW+ S S DGQ + W W
Sbjct: 974 EGNRRLDQSVNDWSSSVSRDGQYKK-----------WWLEFFKRW--------------- 1007
Query: 524 WGQRRRNSRGDFKENSRGWGSASGGDWKSNRPPRSADDSNRGVNLTATRQKLDIFTAE 697
+ E S GW WK+NRP RSADDSNRG + TATRQK+D+FTAE
Sbjct: 1008 -----------WLELSGGW------QWKNNRPARSADDSNRGGHFTATRQKIDLFTAE 1048
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 102 bits (253), Expect = 2e-19
Identities = 76/247 (30%), Positives = 117/247 (47%), Gaps = 20/247 (8%)
Frame = +2
Query: 17 SSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWG-KKVDEPEN 193
SSW Q+ D +W + E ++S + + SG WS+ K + SSWG +K D P+
Sbjct: 1517 SSWAQQGDS---TWKDSKEARSSVKANNSTNSGGWST-GKALVDGVSSSWGSQKEDRPQP 1572
Query: 194 NPHQSQSGSWSSLGKKVEKDG-GSWDGPK-QSNSDSSWGKATKGGGLGSTTAE--GNRRL 361
+ G + K +++G SWD K + + SSWG+ ++ ++A+ G+ +
Sbjct: 1573 KSNDRSVGD-GNFDKDAKEEGLSSWDAKKVERKTQSSWGQPSESKNSAQSSADHWGSDKS 1631
Query: 362 DQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGW--DSQKVGVEESDKQPQWGQR 535
+Q G SSG G + + DS W S V W +S + D Q WGQ
Sbjct: 1632 NQP-----GKSSGWGSEDTNAGKDSEKQDSWGKSNVSTWKKESGEKLHGSDDSQSPWGQP 1686
Query: 536 RRNSRGDFK-ENSRGWGSASGGDWKS------------NRPPRSADDSNRGVNLTATRQK 676
+ + E RGWGS++ G+WKS NRPPR +D + V LTATR++
Sbjct: 1687 GGSGWNKKQPEGGRGWGSSNTGEWKSRKNQNQNQNQNQNRPPRGPNDDSPRVALTATRKR 1746
Query: 677 LDIFTAE 697
+D F E
Sbjct: 1747 MDEFPTE 1753
Score = 63.2 bits (152), Expect = 8e-08
Identities = 66/238 (27%), Positives = 98/238 (41%), Gaps = 28/238 (11%)
Frame = +2
Query: 44 DGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKKVDEPENNPHQSQSGSW 223
D SW + + + + K +GS S+ + G SSWG K D+ N S++G W
Sbjct: 1109 DESSW-DAFPSSGTGWNANKIDTGSGSA------EGGWSSWGSKKDQA-NPEDSSKTGGW 1160
Query: 224 SSLGKKVE-------KDGG-----SWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRRLDQ 367
SS G K + K GG SW G Q + WG+ K D
Sbjct: 1161 SSGGSKQKPQPEDSSKSGGWDASKSWGGSNQGDPSPVWGQPVKATN------------DI 1208
Query: 368 SINDWNGSSS--GDGQLNESTRDDSTNIGGWNSSTVGGWDSQK--VGVEESDKQPQWGQ- 532
SI + +GS S G G N + D + NSST GGWD+ K G + D WG
Sbjct: 1209 SIENDHGSGSAEGGGWANSGMKKDLSK--QENSSTAGGWDASKSWSGSKPKDPSSAWGAG 1266
Query: 533 ---------RRRNSRGDFKENSRGWGSASGGDWKSN--RPPRSADDSNRGVNLTATRQ 673
++ +S+ D S G SG K + +P SA ++ G + + +++
Sbjct: 1267 KKTDDNNGWKKSDSKKDLASGSVEDGGCSGWGPKKDLLQPEDSAGENGWGASKSKSKE 1324
Score = 63.2 bits (152), Expect = 8e-08
Identities = 60/227 (26%), Positives = 84/227 (37%), Gaps = 18/227 (7%)
Frame = +2
Query: 11 GGSSWGQKVDKDG-------GSWGEKVETKNSPQLSGKEQSGSWS---SWAKPVEKDGGS 160
G SSWG K D+ G W +K PQ +SG W SW + D
Sbjct: 1138 GWSSWGSKKDQANPEDSSKTGGWSSG-GSKQKPQPEDSSKSGGWDASKSWGGSNQGDPSP 1196
Query: 161 SWGKKVDEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTT 340
WG+ V + ++ GS S+ G G D KQ NS +T GG S +
Sbjct: 1197 VWGQPVKATNDISIENDHGSGSAEGGGWANSGMKKDLSKQENS------STAGGWDASKS 1250
Query: 341 AEGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNI--GGWNSSTVGGWDSQK--VGVEES 508
G++ D S + W D D ++ G GW +K + E+S
Sbjct: 1251 WSGSKPKDPS-SAWGAGKKTDDNNGWKKSDSKKDLASGSVEDGGCSGWGPKKDLLQPEDS 1309
Query: 509 DKQPQWGQRRRNSRGDFKENSRGWG----SASGGDWKSNRPPRSADD 637
+ WG + S KE S WG WK N P R +++
Sbjct: 1310 AGENGWGASKSKS----KEPSSAWGKPAQETDNIGWKKNNPQRDSEN 1352
>ref|XP_002299207.2| hypothetical protein POPTR_0001s06460g [Populus trichocarpa]
gi|550346662|gb|EEE84012.2| hypothetical protein
POPTR_0001s06460g [Populus trichocarpa]
Length = 888
Score = 97.8 bits (242), Expect = 3e-18
Identities = 77/248 (31%), Positives = 108/248 (43%), Gaps = 16/248 (6%)
Frame = +2
Query: 2 ERDGGSSWGQK--------VDKDGGSWGEKV--ETKNSPQLSGKEQSGSWSSWAKPVEKD 151
+ D S WG+ V GG G ++ +T+N QL G ++SG W + D
Sbjct: 603 QADTASGWGKSKSLDRGWGVSNSGGGNGNEMNNKTENQSQLEGGKESGGWGA----KNTD 658
Query: 152 GGSSWGKKVDEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLG 331
WG KV N +Q+ + S W PK + D WG + GGG G
Sbjct: 659 ADKPWGNKV-----NSNQADTAS-------------CWGKPK--SPDLGWGVSNSGGGNG 698
Query: 332 STTAEGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSS-----TVGGWD-SQKV 493
S + +QS+ D S G G+ ++ GW SS V GW
Sbjct: 699 SEMEDKTE--NQSLLDRGKESGGWGKPKSISQ-------GWGSSKDSVKAVDGWGVPNSA 749
Query: 494 GVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDWKSNRPPRSADDSNRGVNLTATRQ 673
G S++ QWGQ+ + + E SRGWGS +G K NRP + +DS+ T TRQ
Sbjct: 750 GSNGSERDQQWGQQSGEFKKNRTEGSRGWGSNNGHWKKRNRPSKPHEDSSSSGLFTMTRQ 809
Query: 674 KLDIFTAE 697
LDIFT++
Sbjct: 810 WLDIFTSQ 817
Score = 57.0 bits (136), Expect = 6e-06
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 34/234 (14%)
Frame = +2
Query: 41 KDGGSWGEKVETKNSPQLSGKEQSGSWSS--------WAKPV---EKDGGSSWGKKVDEP 187
K+ W +K + + G + + SW + W + V + D SWG+ P
Sbjct: 490 KESSDWNKKSNSNQTDAACGSKAASSWGAKNTDADKRWGRKVDLNQADTSCSWGRS-KTP 548
Query: 188 ENNPHQSQSGSWSSLGKKVE------------KDGGSWDGPKQSNSDSSWGKATKGGGLG 331
+ S SG S+G ++E K+ W G K +++D W + K
Sbjct: 549 DRGWGLSNSG--GSIGSEMENKTENQSLLDRGKESVGW-GTKNTDADKPW--SNKVNSNQ 603
Query: 332 STTAEGNRRLDQSINDWNGSSSGDG---QLNESTRDDSTNIGGWNSSTVGGWDSQKVGVE 502
+ TA G + W S+SG G ++N T + S GG S GGW G +
Sbjct: 604 ADTASGWGKSKSLDRGWGVSNSGGGNGNEMNNKTENQSQLEGGKES---GGW-----GAK 655
Query: 503 ESDKQPQWGQRRRNSRGDF-------KENSRGWG-SASGGDWKSNRPPRSADDS 640
+D WG + +++ D K GWG S SGG S ++ + S
Sbjct: 656 NTDADKPWGNKVNSNQADTASCWGKPKSPDLGWGVSNSGGGNGSEMEDKTENQS 709
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 97.8 bits (242), Expect = 3e-18
Identities = 81/271 (29%), Positives = 115/271 (42%), Gaps = 44/271 (16%)
Frame = +2
Query: 17 SSWGQKVDKDGGSWGEKVETKNSPQLSG------KEQSGSWSSWAKPVEKDGG----SSW 166
S+WG + WG++V + + SG E S W S + V+ D G SS
Sbjct: 1519 STWGAENTDGDKLWGKEVSSNQADTASGWGKPKSPEISLGWGSTKESVKSDRGWGVSSSG 1578
Query: 167 GKKVDEPENNPHQSQ---SGSWSSLGKKVEKDGGS-WDGPKQSNSDSSWGKATKGG---- 322
G + + EN Q SG W + + D S W PK S + WG + + G
Sbjct: 1579 GGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWGKPKSSENSQGWGLSKESGKEVH 1638
Query: 323 ---------GLGSTTAEGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIG--------- 448
G GS T N +QS+ + S D + + + ++ G
Sbjct: 1639 EWGVPNSAGGNGSETNNNNE--NQSLVEQGKESGWDNKASSNQEGTASGWGKPKSPALSE 1696
Query: 449 GWNS-----STVGGWD-SQKVGVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDWKS 610
GW S V GW G S + QWGQ+ R + D E SRGWGS + GDWK+
Sbjct: 1697 GWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGWGS-NNGDWKN 1755
Query: 611 --NRPPRSADDSNRGVNLTATRQKLDIFTAE 697
NRP + +D N T TRQ+LD+FT++
Sbjct: 1756 KRNRPSKPHEDLNASGIFTTTRQRLDVFTSQ 1786
Score = 57.8 bits (138), Expect = 3e-06
Identities = 57/250 (22%), Positives = 92/250 (36%), Gaps = 44/250 (17%)
Frame = +2
Query: 17 SSWGQKVDKDGGSWGEK-------------VETKNSPQLSGKEQSGSWSSWAKPVEKDGG 157
SS VDK+ G+ EK V + + + + SW+S + +
Sbjct: 1331 SSGNWDVDKNDGAVKEKPWSLGMNTAEANDVASSGWDTAAARTTNNSWNSENNVAQSNSF 1390
Query: 158 SSWGKKVDEPEN------NPHQSQSGSWSSLGKKVEKDGGSWDGPKQSN-------SDSS 298
S W K EP N + S W + G +W + N S S
Sbjct: 1391 SGWATKKPEPHNGFATKVQEEPTTSNDWDA--------GAAWGRKDRDNKFAETNASKSW 1442
Query: 299 WGKATKGGGLGSTTAEGNRRLDQSI--NDWNGSSSGD----GQLNESTRDDSTNIGGWNS 460
WGK T G G ++ R DQ + + W+ S D G +++T++ +T GW+S
Sbjct: 1443 WGKVTDGDESGQNKSKNKRPEDQDVGTHGWDDKMSQDQSISGWASKTTQEATTESLGWDS 1502
Query: 461 -------STVGGWDSQKV-GVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGD----W 604
GW + G E +D WG+ +++ D + GWG + W
Sbjct: 1503 KGNSNPGDAACGWKAASTWGAENTDGDKLWGKEVSSNQAD---TASGWGKPKSPEISLGW 1559
Query: 605 KSNRPPRSAD 634
S + +D
Sbjct: 1560 GSTKESVKSD 1569
>ref|XP_006286895.1| hypothetical protein CARUB_v10000039mg [Capsella rubella]
gi|482555601|gb|EOA19793.1| hypothetical protein
CARUB_v10000039mg [Capsella rubella]
Length = 1437
Score = 88.6 bits (218), Expect = 2e-15
Identities = 79/237 (33%), Positives = 105/237 (44%), Gaps = 23/237 (9%)
Frame = +2
Query: 8 DGGSSWGQKVD--KD--GGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKK 175
DGGSSWG+K D KD G SWG KV+ +S GK+ G SSWAK + DGGSSWGKK
Sbjct: 1011 DGGSSWGKKDDGHKDDRGSSWGIKVDGGSS---WGKKDDGG-SSWAK--KDDGGSSWGKK 1064
Query: 176 VDEPENNPHQSQSG-SWSSLGK------KVEKDGGSWDGPKQSNSDSSWGKATKGGGLGS 334
D P + + G SW+ K++ G SW K+ + SSWGK GG
Sbjct: 1065 DDGPSSWGKKDDGGPSWAKKADGGASWGKMDDGGSSWG--KKDDGGSSWGKKDDGGSSWG 1122
Query: 335 TTAEGNRRLDQSINDWNGSSSG---DGQLNESTRDDSTNIGGWNSSTVGGWDSQKV---- 493
+G + D GSS G DG + +DD + W+++ GG+ Q
Sbjct: 1123 KKDDGGSSWGK--KDDGGSSWGKKDDGGSSWGKKDDGGS--SWDNNDDGGYTEQTYDRGG 1178
Query: 494 ----GVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGG-DWKSNRPPRSADDSNRG 649
G ++ W Q R E+ W SGG +W S +D G
Sbjct: 1179 RGFGGRRGGGRRGGWDQSGRGRSLSNSEDLGPWNKPSGGSNWGSGSAWGQQNDGGGG 1235
Score = 87.0 bits (214), Expect = 5e-15
Identities = 73/228 (32%), Positives = 102/228 (44%), Gaps = 28/228 (12%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVE--------KDGGSS 163
DGGSSW +K D G SWG+K + P GK+ G SWAK + DGGSS
Sbjct: 1046 DGGSSWAKK-DDGGSSWGKK---DDGPSSWGKKDDGG-PSWAKKADGGASWGKMDDGGSS 1100
Query: 164 WGKKVDEPENNPHQSQSG-SW-------SSLGKKVEKDGGSWDGPKQSNSDSSWGKATKG 319
WGKK D + + G SW SS GKK + G SW K+ + SSWGK G
Sbjct: 1101 WGKKDDGGSSWGKKDDGGSSWGKKDDGGSSWGKK-DDGGSSWG--KKDDGGSSWGKKDDG 1157
Query: 320 GGLGSTTAEG---NRRLDQSINDWNGSSSGD--GQLNESTR----DDSTNIGGWNSSTVG 472
G +G + D+ + G G G ++S R +S ++G WN + G
Sbjct: 1158 GSSWDNNDDGGYTEQTYDRGGRGFGGRRGGGRRGGWDQSGRGRSLSNSEDLGPWNKPSGG 1217
Query: 473 -GWDSQKVGVEESD--KQPQWGQRRRNSRGDFKENSRGWGSASGGDWK 607
W S +++D WG++ N R + E+ G GG ++
Sbjct: 1218 SNWGSGSAWGQQNDGGGGSSWGRQNDNGRKPWNEHGNGGRGFGGGGFR 1265
Score = 78.6 bits (192), Expect = 2e-12
Identities = 80/255 (31%), Positives = 110/255 (43%), Gaps = 37/255 (14%)
Frame = +2
Query: 8 DGGSSWGQKVD--KD--GGSWGEKVETKNS--PQLSGKEQSGSWSSWAKPVEKDGGSSWG 169
DGGSSWG+K D KD G SWG+K + +S + G + G SW K + DGGSSWG
Sbjct: 961 DGGSSWGKKDDGHKDDGGSSWGKKDDGGSSWVKKDDGHKDDGV-LSWGK--KDDGGSSWG 1017
Query: 170 KKVDEPENNPHQSQSGSW-------SSLGKK-------VEKDGGSWDGPKQSNSDSSWGK 307
KK D +++ + SW SS GKK +KD G K+ + SSWGK
Sbjct: 1018 KKDDGHKDD----RGSSWGIKVDGGSSWGKKDDGGSSWAKKDDGGSSWGKKDDGPSSWGK 1073
Query: 308 ATKGGGLGSTTAEGNR---RLDQSINDW-----NGSSSG---DGQLNESTRDDSTNIGGW 454
GG + A+G ++D + W GSS G DG + +DD + G
Sbjct: 1074 KDDGGPSWAKKADGGASWGKMDDGGSSWGKKDDGGSSWGKKDDGGSSWGKKDDGGSSWGK 1133
Query: 455 NSSTVGGWDSQKVGVEESDKQPQWGQR-RRNSRGDFKENS-----RGWGSASGGDWKSNR 616
W + G K+ G N G + E + RG+G GG +
Sbjct: 1134 KDDGGSSWGKKDDGGSSWGKKDDGGSSWDNNDDGGYTEQTYDRGGRGFGGRRGGGRRG-- 1191
Query: 617 PPRSADDSNRGVNLT 661
D S RG +L+
Sbjct: 1192 ---GWDQSGRGRSLS 1203
Score = 62.0 bits (149), Expect = 2e-07
Identities = 61/209 (29%), Positives = 81/209 (38%), Gaps = 13/209 (6%)
Frame = +2
Query: 11 GGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKKVDEPE 190
G WG+ DG SWG + K S +SW K + DGGSSWGKK D
Sbjct: 929 GAPGWGKP--DDGPSWGNQ----------DKGGSTFVASWGK--KDDGGSSWGKKDD--- 971
Query: 191 NNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDS---SWGKATKGGGLGSTTAEGNRRL 361
H+ G SS GKK + G SW + D SWGK GG +G++
Sbjct: 972 --GHKDDGG--SSWGKK-DDGGSSWVKKDDGHKDDGVLSWGKKDDGGSSWGKKDDGHK-- 1024
Query: 362 DQSINDW-----NGSSSG---DGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVEESDKQ 517
D + W GSS G DG + + +DD + G W ++ D
Sbjct: 1025 DDRGSSWGIKVDGGSSWGKKDDGGSSWAKKDDGGSSWGKKDDGPSSWG------KKDDGG 1078
Query: 518 PQWGQRRRN--SRGDFKENSRGWGSASGG 598
P W ++ S G + WG G
Sbjct: 1079 PSWAKKADGGASWGKMDDGGSSWGKKDDG 1107
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 87.0 bits (214), Expect = 5e-15
Identities = 73/264 (27%), Positives = 107/264 (40%), Gaps = 39/264 (14%)
Frame = +2
Query: 23 WGQK---VDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKP-VEKDGG----SSWGKKV 178
W +K + +G +WG +TK+ + +W+SW K +E D S GKK
Sbjct: 1484 WNKKSSETESNGATWGSSDKTKSG--------AAAWNSWDKKNIETDSEPAAWGSQGKKN 1535
Query: 179 DEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGG------------ 322
E E+ P + G+W + E W + NS++ G A G
Sbjct: 1536 SETESGP--AAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGP 1593
Query: 323 -GLGSTTAEGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGV 499
GST A D++ ++ ++ G N+ T + + G W S ++
Sbjct: 1594 AAWGSTDAAAWGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDT 1653
Query: 500 EESDKQPQWGQRRRNSR-GDFKENSR------------GWGSASGGDWKSN-----RPPR 625
E D+ P + SR D KE S+ GW + G DWK N RPPR
Sbjct: 1654 NEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPPR 1713
Query: 626 SADDSNRGVNLTATRQKLDIFTAE 697
S D N TATRQ+LD FT+E
Sbjct: 1714 SED--NLAPMFTATRQRLDSFTSE 1735
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 87.0 bits (214), Expect = 5e-15
Identities = 73/264 (27%), Positives = 107/264 (40%), Gaps = 39/264 (14%)
Frame = +2
Query: 23 WGQK---VDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKP-VEKDGG----SSWGKKV 178
W +K + +G +WG +TK+ + +W+SW K +E D S GKK
Sbjct: 1484 WNKKSSETESNGATWGSSDKTKSG--------AAAWNSWDKKNIETDSEPAAWGSQGKKN 1535
Query: 179 DEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGG------------ 322
E E+ P + G+W + E W + NS++ G A G
Sbjct: 1536 SETESGP--AAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGP 1593
Query: 323 -GLGSTTAEGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGV 499
GST A D++ ++ ++ G N+ T + + G W S ++
Sbjct: 1594 AAWGSTDAAAWGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDT 1653
Query: 500 EESDKQPQWGQRRRNSR-GDFKENSR------------GWGSASGGDWKSN-----RPPR 625
E D+ P + SR D KE S+ GW + G DWK N RPPR
Sbjct: 1654 NEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPPR 1713
Query: 626 SADDSNRGVNLTATRQKLDIFTAE 697
S D N TATRQ+LD FT+E
Sbjct: 1714 SED--NLAPMFTATRQRLDSFTSE 1735
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 87.0 bits (214), Expect = 5e-15
Identities = 73/264 (27%), Positives = 107/264 (40%), Gaps = 39/264 (14%)
Frame = +2
Query: 23 WGQK---VDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKP-VEKDGG----SSWGKKV 178
W +K + +G +WG +TK+ + +W+SW K +E D S GKK
Sbjct: 347 WNKKSSETESNGATWGSSDKTKSG--------AAAWNSWDKKNIETDSEPAAWGSQGKKN 398
Query: 179 DEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGG------------ 322
E E+ P + G+W + E W + NS++ G A G
Sbjct: 399 SETESGP--AAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGP 456
Query: 323 -GLGSTTAEGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGV 499
GST A D++ ++ ++ G N+ T + + G W S ++
Sbjct: 457 AAWGSTDAAAWGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDT 516
Query: 500 EESDKQPQWGQRRRNSR-GDFKENSR------------GWGSASGGDWKSN-----RPPR 625
E D+ P + SR D KE S+ GW + G DWK N RPPR
Sbjct: 517 NEDDRNPWVSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPPR 576
Query: 626 SADDSNRGVNLTATRQKLDIFTAE 697
S D N TATRQ+LD FT+E
Sbjct: 577 SED--NLAPMFTATRQRLDSFTSE 598
>ref|XP_002871085.1| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp.
lyrata] gi|297316922|gb|EFH47344.1| hypothetical protein
ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata]
Length = 1476
Score = 83.6 bits (205), Expect = 6e-14
Identities = 66/201 (32%), Positives = 81/201 (40%), Gaps = 5/201 (2%)
Frame = +2
Query: 11 GGSSWGQKVDKDGG--SWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKKVDE 184
GGSSWGQ+ D DGG SWG++ +T G S W K GGSSWGK+ D
Sbjct: 1102 GGSSWGQQ-DSDGGGSSWGKENDT------------GGGSGWGKQDSGGGGSSWGKQND- 1147
Query: 185 PENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSD-SSWGKATKGGGLGSTTAEGNRRL 361
SGS SS GK+ GGS G + + D SSWGK GG GS + N
Sbjct: 1148 --------ASGSGSSWGKQNNAGGGSSWGKQDTGGDGSSWGKQDGGGSSGSGWGKQNNAS 1199
Query: 362 DQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVEE--SDKQPQWGQR 535
S W S G + +D W GG G + S WG++
Sbjct: 1200 GGS--SWGKQSDAGGGSSWDKQDGGGGGSSWGKQDGGGGSGSAWGKQNDTSGGSSSWGKQ 1257
Query: 536 RRNSRGDFKENSRGWGSASGG 598
+ G WG GG
Sbjct: 1258 NDSGGGS------SWGKQDGG 1272
Score = 79.0 bits (193), Expect = 1e-12
Identities = 68/212 (32%), Positives = 88/212 (41%), Gaps = 4/212 (1%)
Frame = +2
Query: 11 GGSSWGQKVDKDGGS---WGEKVETKNSPQLSGKEQ-SGSWSSWAKPVEKDGGSSWGKKV 178
GGSSWG K D GGS WG++ +T GK+ SG SSW K GGSSWGK
Sbjct: 1224 GGSSWG-KQDGGGGSGSAWGKQNDTSGGSSSWGKQNDSGGGSSWGKQDGGGGGSSWGK-- 1280
Query: 179 DEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRR 358
P G SS GK + DGGS +QS +G + GGG G +
Sbjct: 1281 ------PDNDGGGGGSSWGK--QGDGGSKPWNEQSGGGRGFGGSRGGGGFRGGFRGGRNQ 1332
Query: 359 LDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVEESDKQPQWGQRR 538
G S DG + S + D+ W S GG SD + WG+
Sbjct: 1333 ------SARGGRSFDGDQSSSWKTDNQE-NTWKSDQSGG----------SDWKKGWGENS 1375
Query: 539 RNSRGDFKENSRGWGSASGGDWKSNRPPRSAD 634
NS+ +S G G+ + W +N + D
Sbjct: 1376 NNSKP--SGSSSGGGAGNWPSWDTNSKRETND 1405
Score = 75.1 bits (183), Expect = 2e-11
Identities = 71/212 (33%), Positives = 89/212 (41%), Gaps = 16/212 (7%)
Frame = +2
Query: 8 DGGSSWGQKVDK-----------DGGSWGEKVETKNS--PQLSGKEQSGSWSSWAKPVEK 148
DGGSSWG K DK DGGSWG K + +S + G++ G SSW K +
Sbjct: 946 DGGSSWG-KQDKQEGVASWGKKDDGGSWGNKDDGVSSWGKKDDGQKDDGG-SSWGK--KD 1001
Query: 149 DGGSSWGKKVDEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGL 328
DGGSSWGKK D + + G SL K + G SW K+ + SSWGK GG
Sbjct: 1002 DGGSSWGKKDDGGYSWGKKDDGG---SLWGKKDDGGSSWG--KKDDGGSSWGKKDDGGYS 1056
Query: 329 GSTTAEGNRRLDQSINDWNGSSSGDGQLNE-STRDDSTNIGGWNSSTVGGWDSQKVGVEE 505
T G R G G Q S+ +S ++ WN + G
Sbjct: 1057 EQTFDMGGRGFGG--RRGGGRRGGRDQFGRGSSFSNSEDLAPWNKPSGGS---------- 1104
Query: 506 SDKQPQWGQRRRNSRGDF--KENSRGWGSASG 595
WGQ+ + G KEN G GS G
Sbjct: 1105 -----SWGQQDSDGGGSSWGKENDTGGGSGWG 1131
Score = 74.3 bits (181), Expect = 3e-11
Identities = 67/223 (30%), Positives = 95/223 (42%), Gaps = 24/223 (10%)
Frame = +2
Query: 14 GSSWGQKVDKDGGS-WGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDG-GSSWGKKVDEP 187
GS WG++ + GGS WG++ + ++ G SSW K G GS+WGK+ D
Sbjct: 1189 GSGWGKQNNASGGSSWGKQSDAGGGSSWDKQDGGGGGSSWGKQDGGGGSGSAWGKQND-- 1246
Query: 188 ENNPHQSQSGSWSSLGKKVEKDGG-SWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRRLD 364
SG SS GK+ + GG SW SSWGK GG G ++ ++ D
Sbjct: 1247 -------TSGGSSSWGKQNDSGGGSSWGKQDGGGGGSSWGKPDNDGGGGGSS--WGKQGD 1297
Query: 365 QSINDWN---------GSSSGDGQLNESTRDDSTNIGGWNSSTVGG--WDSQKVGVEESD 511
WN G S G G R GG N S GG +D + ++D
Sbjct: 1298 GGSKPWNEQSGGGRGFGGSRGGGGFRGGFR------GGRNQSARGGRSFDGDQSSSWKTD 1351
Query: 512 KQPQWGQRRRNSRGDFKE-------NSRGWGSASG---GDWKS 610
Q + ++ D+K+ NS+ GS+SG G+W S
Sbjct: 1352 NQENTWKSDQSGGSDWKKGWGENSNNSKPSGSSSGGGAGNWPS 1394
Score = 73.2 bits (178), Expect = 8e-11
Identities = 68/220 (30%), Positives = 93/220 (42%), Gaps = 23/220 (10%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKKVDEP 187
DGGSSWG+K D G SWG+K + L GK+ G SSW K + DGGSSWGKK
Sbjct: 1002 DGGSSWGKK-DDGGYSWGKK---DDGGSLWGKKDDGG-SSWGK--KDDGGSSWGKK---- 1050
Query: 188 ENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQ-------SNSD--SSWGKATKGGGLGSTT 340
++ + Q+ G + GG G Q SNS+ + W K + G G
Sbjct: 1051 DDGGYSEQTFDMGGRGFGGRRGGGRRGGRDQFGRGSSFSNSEDLAPWNKPSGGSSWGQQD 1110
Query: 341 AEGNRRLDQSIND------WNGSSSGDGQLNESTRDDSTNIG-GWNSSTVGG----WDSQ 487
++G ND W SG G + ++D++ G W G W Q
Sbjct: 1111 SDGGGSSWGKENDTGGGSGWGKQDSGGGGSSWGKQNDASGSGSSWGKQNNAGGGSSWGKQ 1170
Query: 488 KVGVEESDKQPQWGQRRRNSRGDFKENSRGWG---SASGG 598
G + S WG++ + GWG +ASGG
Sbjct: 1171 DTGGDGS----SWGKQDGGG-----SSGSGWGKQNNASGG 1201
>ref|NP_196049.1| kow domain-containing transcription factor 1 [Arabidopsis thaliana]
gi|332003341|gb|AED90724.1| kow domain-containing
transcription factor 1 [Arabidopsis thaliana]
Length = 1493
Score = 83.2 bits (204), Expect = 7e-14
Identities = 75/237 (31%), Positives = 98/237 (41%), Gaps = 29/237 (12%)
Frame = +2
Query: 11 GGSSWGQKVDKDGG--SWGEKVETKNSPQLSGKEQSG---SW----------SSWAKPVE 145
GGSSWG K D DGG SWG++ + GK+ +G SW SSW K +
Sbjct: 1128 GGSSWG-KQDGDGGGSSWGKENDAGGGSSW-GKQDNGVGSSWGKQNDGSGGGSSWGKQND 1185
Query: 146 KDGGSSWGKKVDEPENNPHQSQSG---SWSSLGKKVEKDGG-SWDGPKQSNSDSSWGKAT 313
GGSSWGK+ + + Q G S S+ GK+ GG SW + SSWGK
Sbjct: 1186 AGGGSSWGKQDSGGDGSSWGKQDGGGDSGSAWGKQNNTSGGSSWGKQSDAGGGSSWGKQD 1245
Query: 314 KG----------GGLGSTTAEGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSS 463
G GG GS +A G + + + W + G + +D W
Sbjct: 1246 GGGGGSSWGKQDGGGGSGSAWGKQNETSNGSSWGKQNDSGGGSSWGKQDGGGGGSSWGKQ 1305
Query: 464 TVGGWDSQKVGVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDWKSNRPPRSAD 634
GG S + +P W + RG F E RG G GG +S R RS D
Sbjct: 1306 NDGGGGSSWGKQGDGGSKP-WNEHSGGGRG-FGER-RGGGGFRGGRNQSGRGGRSFD 1359
Score = 80.1 bits (196), Expect = 6e-13
Identities = 66/233 (28%), Positives = 84/233 (36%), Gaps = 42/233 (18%)
Frame = +2
Query: 11 GGSSWGQKVDKDGGS---WGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKKVD 181
GGSSWG K D GGS WG++ ET N + SG SSW K GGSSWGK
Sbjct: 1249 GGSSWG-KQDGGGGSGSAWGKQNETSNGSSWGKQNDSGGGSSWGKQDGGGGGSSWGK--- 1304
Query: 182 EPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGL---------GS 334
Q+ G SS GK + DGGS + S +G+ GGG G
Sbjct: 1305 -------QNDGGGGSSWGK--QGDGGSKPWNEHSGGGRGFGERRGGGGFRGGRNQSGRGG 1355
Query: 335 TTAEGNR----RLDQSINDWNGSSSGDGQLNESTRDDSTN-----------IGGWNS--- 460
+ +G R + D N W SG + +DS N G W S
Sbjct: 1356 RSFDGGRSSSWKTDNQENTWKSDQSGGSDWKKGWGEDSNNSKPSGSSAGGCAGNWPSWDT 1415
Query: 461 ------------STVGGWDSQKVGVEESDKQPQWGQRRRNSRGDFKENSRGWG 583
+ W + V + W ++ N G E WG
Sbjct: 1416 NSKKETNDKPGDDSKSAWGTSNDQVNTDNNNDSWNKKPNNDVGTSGEADNAWG 1468
Score = 79.3 bits (194), Expect = 1e-12
Identities = 67/227 (29%), Positives = 98/227 (43%), Gaps = 18/227 (7%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGG-SWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDG-GSSWGKKVD 181
D GS+WG++ + GG SWG++ + ++ G SSW K G GS+WGK
Sbjct: 1212 DSGSAWGKQNNTSGGSSWGKQSDAGGGSSWGKQDGGGGGSSWGKQDGGGGSGSAWGK--- 1268
Query: 182 EPENNPHQSQSGSWSSLGKKVEKDGG-SWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRR 358
Q+++ + SS GK+ + GG SW SSWGK GGG S +G
Sbjct: 1269 -------QNETSNGSSWGKQNDSGGGSSWGKQDGGGGGSSWGKQNDGGGGSSWGKQG--- 1318
Query: 359 LDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGG--WDSQKVGVEESDKQPQWGQ 532
D WN S G E R GG N S GG +D + ++D Q +
Sbjct: 1319 -DGGSKPWNEHSGGGRGFGE-RRGGGGFRGGRNQSGRGGRSFDGGRSSSWKTDNQENTWK 1376
Query: 533 RRRNSRGDFKE-------NSRGWGSASGG------DWKSNRPPRSAD 634
++ D+K+ NS+ GS++GG W +N + D
Sbjct: 1377 SDQSGGSDWKKGWGEDSNNSKPSGSSAGGCAGNWPSWDTNSKKETND 1423
Score = 77.0 bits (188), Expect = 5e-12
Identities = 68/208 (32%), Positives = 87/208 (41%), Gaps = 11/208 (5%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKP---VEKDGGSSWGKKV 178
DG +SWG+K DGGSWG+K + K+ G SSW K + DGGSSW KK
Sbjct: 949 DGAASWGKK--DDGGSWGKKDD-------GNKDDGG--SSWGKKDDGQKDDGGSSWEKKF 997
Query: 179 DEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRR 358
D + + G SS GKK DGGS G K+ + SSWGK GG L +G
Sbjct: 998 DGGSSWGKKDDGG--SSWGKK--DDGGSLWG-KKDDGGSSWGKEDDGGSLWGKKDDGE-- 1050
Query: 359 LDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVEESDKQPQWGQRR 538
+ W DG+ + +DD + W GG+ Q + G R
Sbjct: 1051 -----SSW--GKKDDGESSWGKKDDGGS--SWGKKDEGGYSEQTFDRGGRGFGGRRGGGR 1101
Query: 539 RNSRGDF--------KENSRGWGSASGG 598
R R F E+ W SGG
Sbjct: 1102 RGGRDQFGRGSSFGNSEDPAPWSKPSGG 1129
Score = 76.6 bits (187), Expect = 7e-12
Identities = 71/248 (28%), Positives = 92/248 (37%), Gaps = 51/248 (20%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGGSWGEKVETKNSPQL-----------------SGKEQSG------- 115
DG SSWG+K D G SWG+K E S Q G++Q G
Sbjct: 1058 DGESSWGKK-DDGGSSWGKKDEGGYSEQTFDRGGRGFGGRRGGGRRGGRDQFGRGSSFGN 1116
Query: 116 --------------SW---------SSWAKPVEKDGGSSWGKKVDEPENN--PHQSQSGS 220
SW SSW K + GGSSWGK+ + ++ SG
Sbjct: 1117 SEDPAPWSKPSGGSSWGKQDGDGGGSSWGKENDAGGGSSWGKQDNGVGSSWGKQNDGSGG 1176
Query: 221 WSSLGKKVEKDGGSWDGPKQSNSD-SSWGKATKGGGLGSTTAEGNRRLDQSINDWNGSSS 397
SS GK+ + GGS G + S D SSWGK GG GS A G + + W S
Sbjct: 1177 GSSWGKQNDAGGGSSWGKQDSGGDGSSWGKQDGGGDSGS--AWGKQNNTSGGSSWGKQSD 1234
Query: 398 GDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVE-ESDKQPQWGQRRRNSRGDFKENSR 574
G + +D W GG G + E+ WG++ + G
Sbjct: 1235 AGGGSSWGKQDGGGGGSSWGKQDGGGGSGSAWGKQNETSNGSSWGKQNDSGGGS------ 1288
Query: 575 GWGSASGG 598
WG GG
Sbjct: 1289 SWGKQDGG 1296
Score = 73.6 bits (179), Expect = 6e-11
Identities = 81/245 (33%), Positives = 99/245 (40%), Gaps = 44/245 (17%)
Frame = +2
Query: 8 DGGSSWGQKVD--KD--GGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKK 175
DGGSSWG+K D KD G SW +K + +S GK+ G SSW K + DGGS WGKK
Sbjct: 973 DGGSSWGKKDDGQKDDGGSSWEKKFDGGSS---WGKKDDGG-SSWGK--KDDGGSLWGKK 1026
Query: 176 VDEPENNPHQSQSGS-W-------SSLGKKVEKDGGSWDGPKQSNSDSSWGKATKG---- 319
D + + GS W SS GK KD G K+ + SSWGK +G
Sbjct: 1027 DDGGSSWGKEDDGGSLWGKKDDGESSWGK---KDDGESSWGKKDDGGSSWGKKDEGGYSE 1083
Query: 320 -----GGLGSTTAEGNRRLDQSINDWNGSSSGD-----------GQLNESTRDDSTNIGG 451
GG G G R GSS G+ G + +D
Sbjct: 1084 QTFDRGGRGFGGRRGGGRRGGRDQFGRGSSFGNSEDPAPWSKPSGGSSWGKQDGDGGGSS 1143
Query: 452 WNSSTVGG----WDSQKVGVEESDKQPQWGQRRRNSRGDF---KENSRGWGSA-----SG 595
W G W Q GV S WG++ S G K+N G GS+ SG
Sbjct: 1144 WGKENDAGGGSSWGKQDNGVGSS-----WGKQNDGSGGGSSWGKQNDAGGGSSWGKQDSG 1198
Query: 596 GDWKS 610
GD S
Sbjct: 1199 GDGSS 1203
Score = 62.8 bits (151), Expect = 1e-07
Identities = 59/211 (27%), Positives = 79/211 (37%), Gaps = 15/211 (7%)
Frame = +2
Query: 11 GGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKKVDEPE 190
GGSS G K D+D WG+ E S Q KE+S SW K DG SSWG K
Sbjct: 822 GGSSGGNKQDEDS-VWGKLCEASESSQK--KEES----SWGKKGGSDGESSWGNKDGNSS 874
Query: 191 NNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRRLDQS 370
+ S G K G +W D GK G + +AE + +
Sbjct: 875 ASKKDGVSWGQQDKGSDESKGGSAW---SNQCGDFGSGKKKDGSSGWNKSAEDSNANSKG 931
Query: 371 INDW----NGSS---SGDGQLNESTRDDSTNIGGWNSSTVGGWD------SQKVGVEESD 511
+ DW +GSS GDG + +DD G W G D +K ++ D
Sbjct: 932 VPDWGQPNDGSSWGKKGDGAASWGKKDDG---GSWGKKDDGNKDDGGSSWGKKDDGQKDD 988
Query: 512 KQPQWGQR--RRNSRGDFKENSRGWGSASGG 598
W ++ +S G + WG G
Sbjct: 989 GGSSWEKKFDGGSSWGKKDDGGSSWGKKDDG 1019
>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 82.8 bits (203), Expect = 1e-13
Identities = 77/257 (29%), Positives = 114/257 (44%), Gaps = 30/257 (11%)
Frame = +2
Query: 17 SSWGQKVDKDGGSWGEKVETKNSPQLSGKEQS--GSWSSWA-KPVEKDGGSSWGKKVDEP 187
S+WG + G +V +S LS K+ S + S+WA +D S+WGK +
Sbjct: 1466 STWGTTRANENDWCGREVGQDDSASLSVKKSSVLDTSSAWATNTAREDAASAWGKHPAKE 1525
Query: 188 ENNPH----QSQSGSWSSLGKKVEKDGGSWDGPKQS--NSDSSWGKATKGGGLGSTTAEG 349
+ W G + D S G K S N+ S W AT +T+A G
Sbjct: 1526 NTTSTWGTTTASENDWCGRGVGHD-DSASLSGKKSSVLNTSSVW--ATNTAREDATSAWG 1582
Query: 350 NRRLDQ-----------SINDWNGSSSGDGQLNE----STRDDSTNIGGWNSSTVGGWDS 484
+ S NDW G +G + + +DDS ++ GW+S T G
Sbjct: 1583 KNPAKENTTSTWGTTTASENDWCGREAGKVEPVDLQPTKPQDDSASLSGWDSPTGDG--- 1639
Query: 485 QKVGVEESDKQPQWGQRRRN-SRGDFKENSRGWGSASGGDWKS-NRPPRSA----DDSNR 646
++ QWGQ R + ++ + E +R W S S G+WK+ NRPP+S D+S
Sbjct: 1640 -----NSGERNHQWGQHRGDQTKKNRFEGARNWVS-SPGEWKNKNRPPKSPGMVNDNSTM 1693
Query: 647 GVNLTATRQKLDIFTAE 697
G T TRQ+LD+FT+E
Sbjct: 1694 GALYTVTRQRLDMFTSE 1710
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 81.3 bits (199), Expect = 3e-13
Identities = 69/256 (26%), Positives = 104/256 (40%), Gaps = 34/256 (13%)
Frame = +2
Query: 32 KVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKP-VEKDGG-SSWGKKV-DEPENNPH 202
K + DG +WG +TK+ + +WSSW K +E D ++WG + ++PE
Sbjct: 1490 KTESDGATWGSSDKTKSG--------AAAWSSWDKKNMETDSEPAAWGSQSKNKPETESG 1541
Query: 203 QSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKG-------------GGLGSTTA 343
S G+W + + E W + NS++ G A G GST A
Sbjct: 1542 PSTWGAWDTKKSETESGPAGWGIVDKKNSETESGPAAMGNWDKKKSNTESGPAAWGSTDA 1601
Query: 344 EGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVEESDKQPQ 523
D++ ++ ++ G ++ T + + W S + E D+ P
Sbjct: 1602 AVWGFSDKNNSETESDAAAWGSRDKKTSETESGAAAWGSWGQPTPTAANEDANEDDENPW 1661
Query: 524 WGQRRRNSRG-DFKE------------NSRGWGSASGGDWKSN-----RPPRSADDSNRG 649
+ SR D KE +S GW + G DWK RPPRS D N
Sbjct: 1662 VSLKETKSRDKDDKERIQWGNPAKKFPSSGGWSNGGGADWKGKRNHTPRPPRSED--NLA 1719
Query: 650 VNLTATRQKLDIFTAE 697
TATRQ+LD FT+E
Sbjct: 1720 PMFTATRQRLDSFTSE 1735
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 80.5 bits (197), Expect = 5e-13
Identities = 84/264 (31%), Positives = 111/264 (42%), Gaps = 37/264 (14%)
Frame = +2
Query: 17 SSWGQKV--DKDGGSWGEKVETKNSPQLSG-------KEQSGSWSSWAKPVEKDGGSSWG 169
S+WG + DK EKV LSG +S WS W + +SWG
Sbjct: 1481 SAWGTEASWDKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKD--HANATASWG 1538
Query: 170 KKVDEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGK----ATKGGGLGST 337
+ + E N SW++ D GS NS S WG +TKG S
Sbjct: 1539 R--NGSEENSGWDTKASWNTKALDKLDDVGS----AVENSSSVWGAREDFSTKGWEDSSK 1592
Query: 338 TAEGNRRLDQSINDWN--------GSSSGDGQLNESTR--DDS-------TNIGGWNSST 466
+ + + I WN SS G +L E+ + DDS T ++
Sbjct: 1593 PSANEKSIVHQIGGWNVPDAKGTDDSSWGKQKLTENAKGTDDSSWGKQKHTENESSQPAS 1652
Query: 467 VGGWD-SQKVGVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDWKS--NRPPRSA-- 631
WD G E++ Q WGQ R+ FK+N RGW S+SG +WK NRPPRS
Sbjct: 1653 SNAWDLPDATGGSETEMQV-WGQSRKEP---FKKN-RGWASSSG-EWKGKKNRPPRSPGV 1706
Query: 632 --DDSNRGVNLTATRQKLDIFTAE 697
DDS T TRQ+LD+FT+E
Sbjct: 1707 VNDDSTVNAMYTVTRQRLDMFTSE 1730
>ref|XP_006436520.1| hypothetical protein CICLE_v10030480mg [Citrus clementina]
gi|557538716|gb|ESR49760.1| hypothetical protein
CICLE_v10030480mg [Citrus clementina]
Length = 1807
Score = 79.3 bits (194), Expect = 1e-12
Identities = 75/239 (31%), Positives = 104/239 (43%), Gaps = 21/239 (8%)
Frame = +2
Query: 2 ERDGGSSWGQKVDKDGGS-WGEK----VETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSW 166
++DGGSSWG++ DGGS WG++ + +K Q K SW + +DGGSSW
Sbjct: 1157 KQDGGSSWGKQ---DGGSSWGKQDGGSLWSKEPDQQHRKNGGSSWGN------RDGGSSW 1207
Query: 167 GKKVDEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSN----SDSSWGKATKGGGLGS 334
K+ D+ +N +S G + + GG G + S+ G GG+G
Sbjct: 1208 SKQADQQDNQEKPLESDGGRGSGGRWGQGGGRGGGQEVSDQYGRGSFDQGSEKGTGGMGD 1267
Query: 335 TTAEGNRRLDQSINDWN-------GSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKV 493
NRR D+ I DWN GSS GDG + GGW + W+S
Sbjct: 1268 QGNGCNRR-DKGI-DWNKKFNWNSGSSDGDG---------NNGSGGWGKKS--NWNSGSS 1314
Query: 494 GVEESDKQPQWGQRRR----NSRGDFKENSRGWGSASGGDWKSNRPPRSAD-DSNRGVN 655
G ES K W ++ +S GD NS GW S + S+ S D D N+ N
Sbjct: 1315 GAGES-KDTDWNKKSNLNCGSSDGD-GNNSSGWDKKSNWNAGSSGDGESKDTDWNKKCN 1371
Score = 78.2 bits (191), Expect = 2e-12
Identities = 83/266 (31%), Positives = 110/266 (41%), Gaps = 47/266 (17%)
Frame = +2
Query: 2 ERDGGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSG-SW------SSWAKP------- 139
+RDGGSSWG+ +DG SWG+ ++S GK+ G SW SSWAK
Sbjct: 1077 KRDGGSSWGK---QDGSSWGK----QDSGSSLGKQDGGSSWSKQDGGSSWAKQDGGSSWA 1129
Query: 140 --------VEKDGGSSWGKKVDEPENNPHQSQSGSW------SSLGKKVEKDGGS-W--- 265
++DGGSSWGK+ D + Q SW SS GK +DGGS W
Sbjct: 1130 KQDGGSSWAKQDGGSSWGKQ-DGGSSWGKQDGGSSWGKQDGGSSWGK---QDGGSLWSKE 1185
Query: 266 -DGPKQSNSDSSWGKATKGGGLGSTTAEGNRRLDQSINDWNGSSS------GDGQLNEST 424
D + N SSWG GG S A+ ++ + G S G G+
Sbjct: 1186 PDQQHRKNGGSSWGN-RDGGSSWSKQADQQDNQEKPLESDGGRGSGGRWGQGGGRGGGQE 1244
Query: 425 RDDSTNIGGWNSST---VGGWDSQKVGVEESDKQPQWGQR----RRNSRGDFKENSRGWG 583
D G ++ + GG Q G DK W ++ +S GD S GWG
Sbjct: 1245 VSDQYGRGSFDQGSEKGTGGMGDQGNGCNRRDKGIDWNKKFNWNSGSSDGDGNNGSGGWG 1304
Query: 584 SASGGDWKSNRPPRSAD-DSNRGVNL 658
S + S+ S D D N+ NL
Sbjct: 1305 KKSNWNSGSSGAGESKDTDWNKKSNL 1330
Score = 71.6 bits (174), Expect = 2e-10
Identities = 67/229 (29%), Positives = 90/229 (39%), Gaps = 24/229 (10%)
Frame = +2
Query: 5 RDGGSSWGQKVDKDGGS-WGEKVETKNSPQLSGKEQSGS-W---------------SSWA 133
+DGGSSW ++ DGGS WG+K N L GK+ GS W SSW
Sbjct: 997 QDGGSSWAKQ---DGGSSWGKK----NGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWG 1049
Query: 134 KP------VEKDGGSSWGKKVDEPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDS 295
K ++DGGSSWGK Q + SWS ++DGGS G + S
Sbjct: 1050 KQDGGSSLAKQDGGSSWGK----------QDEGSSWS------KRDGGSSWGKQDG---S 1090
Query: 296 SWGKATKGGGLGSTTAEGNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVG- 472
SWGK G LG + + W + DG + + +D ++ W G
Sbjct: 1091 SWGKQDSGSSLGKQDGGSSWSKQDGGSSW---AKQDGGSSWAKQDGGSS---WAKQDGGS 1144
Query: 473 GWDSQKVGVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDWKSNRP 619
W Q D WG++ S ++ WG GG S P
Sbjct: 1145 SWGKQ-------DGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSLWSKEP 1186
Score = 65.5 bits (158), Expect = 2e-08
Identities = 65/240 (27%), Positives = 94/240 (39%), Gaps = 46/240 (19%)
Frame = +2
Query: 17 SSWGQKVDK-DGGSWG-EKVETKNSPQLSG------KEQSGSWSSWAKPVEKDGGSS--- 163
S+WG KV+ SWG E KN + + +G++ W K +D GSS
Sbjct: 801 SAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGK---EDAGSSLQD 857
Query: 164 ----WGKKVDEPENNPHQSQSGSWSSLGKKVEKDGGSW-DGPKQSNSDSSWGKATKGGGL 328
WGK D +N + +S SW K + SW D + N SWGK K G
Sbjct: 858 SQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKG-KDGSS 916
Query: 329 GSTTAEGNRRL--DQSINDWNGSSSG-----DGQLNEST---RDDSTN---IGGWNSSTV 469
GS + + L + W +S G G ++E + +DDS N GWN
Sbjct: 917 GSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKT 976
Query: 470 GGWD-----SQKVGVEESDKQ------------PQWGQRRRNSRGDFKENSRGWGSASGG 598
G D +++ G+ SD Q WG++ S ++ WG GG
Sbjct: 977 FGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGG 1036
Score = 65.5 bits (158), Expect = 2e-08
Identities = 72/285 (25%), Positives = 100/285 (35%), Gaps = 70/285 (24%)
Frame = +2
Query: 5 RDGGSSWGQKVDKDGGSWGEKVETKNSPQLS-GKEQSGSWSSWAKPVEKDGGSSWGKKVD 181
RD G W D S+ KN + S + +GSWS GG +W
Sbjct: 1541 RDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQ--------GGGTW----- 1587
Query: 182 EPENNPHQSQSGSWSSLG------------KKVEKDGGSWD-GPKQSNSDSSWGKATKGG 322
+ N+ SQ G WSS G K + GG W+ G S WG ++G
Sbjct: 1588 KSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWG--SQGS 1645
Query: 323 GLGSTTAEGNRRLDQSI-----------------------------NDWNGSSSGDGQLN 415
G S T+ GNR + S N +G SSG G N
Sbjct: 1646 GWSSGTSTGNRGSNDSSIANDVEGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGN 1705
Query: 416 ESTRDDSTNI-------GGWN-----SSTVGGWDSQKVG----------VEESDKQPQWG 529
+ + D + + GGWN S+ G W +Q G SD+ W
Sbjct: 1706 KGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWN 1765
Query: 530 QRR-----RNSRGDFKENSRGWGSASGGDWKSNRPPRSADDSNRG 649
Q S+ + +SRGWG +G W+ + D S +G
Sbjct: 1766 QSSVATDGGRSKDAGEGSSRGWGKTAGSSWE-----KGNDGSGKG 1805
Score = 56.6 bits (135), Expect = 7e-06
Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 39/238 (16%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKK---- 175
+ S W +K + + GS G+ E+K++ + +W+S + + + GS WGKK
Sbjct: 1340 NNSSGWDKKSNWNAGSSGDG-ESKDTDW----NKKCNWNSGSNDGDGNNGSGWGKKSNWN 1394
Query: 176 ----VDEPENNPHQSQSGSWSSLGKKVEKDG------GSWD-GPKQSNSDSSWGKAT--- 313
V N+ + ++ G+W+S ++ G+W+ G + + +SSWGK +
Sbjct: 1395 SGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWN 1454
Query: 314 ----------KGGGLGSTTAEGNRRLDQSINDWNGSSSGDGQLNEST-----RDDSTNIG 448
G G+ G R + +D G G G+ N R D G
Sbjct: 1455 SRSEDQPEPFNNRGSGNFRGRGGFR-GRGDSD-RGGFGGRGRTNRGGYGGRGRFDREGFG 1512
Query: 449 GWNSSTVGGW------DSQKVGVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDW 604
G S GG+ D G ++ Q G N GD+K G +GG+W
Sbjct: 1513 GRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEW 1570
>ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|355521872|gb|AET02326.1|
Protein DCL [Medicago truncatula]
Length = 481
Score = 79.3 bits (194), Expect = 1e-12
Identities = 73/233 (31%), Positives = 104/233 (44%), Gaps = 3/233 (1%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGS--WSSWAKPVEKDGGSSWGKKVD 181
D SSWGQK D+ V ++S + + EQ SW V SSWGK
Sbjct: 93 DNRSSWGQKKDEI------HVMPEDSSRSNAWEQKPENVKDSWVAKVPV-ANSSWGK-AK 144
Query: 182 EPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRRL 361
PEN P S++ +S GK ++ WD ++ SDSSWGK S ++
Sbjct: 145 SPENRPWDSKNEPNNSFGKPNSQENEPWDS--KNESDSSWGKPK------SQESQPWDSK 196
Query: 362 DQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVE-ESDKQPQWGQRR 538
++S + W S + +S + + G GWDSQ ESDK QWG++
Sbjct: 197 NESNSSWGKPKSQENHPWDSKNESNQTAGS------RGWDSQVASANSESDKSFQWGKQG 250
Query: 539 RNSRGDFKENSRGWGSASGGDWKSNRPPRSADDSNRGVNLTATRQKLDIFTAE 697
R+S FK+N R GS SGG P + D NR + Q+ +++T E
Sbjct: 251 RDS---FKKN-RFEGSQSGG-------PNAGDWKNRSRPVRPPGQRFELYTPE 292
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 79.3 bits (194), Expect = 1e-12
Identities = 73/233 (31%), Positives = 104/233 (44%), Gaps = 3/233 (1%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGS--WSSWAKPVEKDGGSSWGKKVD 181
D SSWGQK D+ V ++S + + EQ SW V SSWGK
Sbjct: 1644 DNRSSWGQKKDEI------HVMPEDSSRSNAWEQKPENVKDSWVAKVPV-ANSSWGK-AK 1695
Query: 182 EPENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRRL 361
PEN P S++ +S GK ++ WD ++ SDSSWGK S ++
Sbjct: 1696 SPENRPWDSKNEPNNSFGKPNSQENEPWDS--KNESDSSWGKPK------SQESQPWDSK 1747
Query: 362 DQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTVGGWDSQKVGVE-ESDKQPQWGQRR 538
++S + W S + +S + + G GWDSQ ESDK QWG++
Sbjct: 1748 NESNSSWGKPKSQENHPWDSKNESNQTAGS------RGWDSQVASANSESDKSFQWGKQG 1801
Query: 539 RNSRGDFKENSRGWGSASGGDWKSNRPPRSADDSNRGVNLTATRQKLDIFTAE 697
R+S FK+N R GS SGG P + D NR + Q+ +++T E
Sbjct: 1802 RDS---FKKN-RFEGSQSGG-------PNAGDWKNRSRPVRPPGQRFELYTPE 1843
Score = 59.3 bits (142), Expect = 1e-06
Identities = 56/230 (24%), Positives = 90/230 (39%), Gaps = 22/230 (9%)
Frame = +2
Query: 20 SWG----QKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKKVDEP 187
SWG QK D+ +WG+ V ++S +SG+W + V++D S P
Sbjct: 1496 SWGAATNQKSDQSASAWGKAVVQEDS------SKSGAWGNAKSVVQEDSSKSGA-----P 1544
Query: 188 ENNPHQSQSGSWSSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGG---LGSTTAEGNRR 358
N H S W + E+ G G K+ +D S +T GG GS+ E +
Sbjct: 1545 ANTNHSSDQSCWGQITGGEERAQGESGGTKKWKADVSQEDSTNSGGWKAWGSSKPEVHEG 1604
Query: 359 LDQSIND-WNGSSSGDGQLNESTRDDSTNIGGW------NSSTVGGWDSQK----VGVEE 505
+ D WN G+ + ++ DS W ++ W +K V E+
Sbjct: 1605 ESTKVQDSWNSQKWKAGE--DVSQKDSQKSSAWGATKPKSNDNRSSWGQKKDEIHVMPED 1662
Query: 506 SDKQPQWGQRRRNSRGDFKEN----SRGWGSASGGDWKSNRPPRSADDSN 643
S + W Q+ N + + + WG A + NRP S ++ N
Sbjct: 1663 SSRSNAWEQKPENVKDSWVAKVPVANSSWGKAKSPE---NRPWDSKNEPN 1709
>ref|XP_001436180.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403319|emb|CAK68783.1| unnamed protein product
[Paramecium tetraurelia]
Length = 1015
Score = 79.0 bits (193), Expect = 1e-12
Identities = 67/245 (27%), Positives = 91/245 (37%), Gaps = 33/245 (13%)
Frame = +2
Query: 14 GSSWGQKVDKD--GGSWGEKVETKNSPQLSG---------KEQSGSWSSWAKPVEKDGGS 160
GSSWG +KD GG WG T P SG QSG W + + +
Sbjct: 225 GSSWGNSDNKDNAGGGWGS-TSTNEQPAQSGGWGSTTTEQPAQSGGWGNSTEQPVQQASE 283
Query: 161 SWGKKVDEPENNPHQSQSGSWSSLGKKVEKDGGSWDG-----PKQSNSDSSWGKATK--- 316
WG K ++P +Q G ++ + ++ GG W KQSN WG +T+
Sbjct: 284 GWGSKTEQPPQQAESNQGGWGTTTEQSNQQSGGGWGSTTEQPQKQSN---GWGNSTQEQQ 340
Query: 317 -----GGGLGSTTAEGNRRLDQSINDWNGSSSGDGQLN---ESTRDDSTNIGGWNSST-- 466
GG GS+ E + QS W S++ ST + +T GGW S+T
Sbjct: 341 PQQSGAGGWGSSNTE---QPAQSSGGWGASTTEQPATTGGWGSTTEQATTSGGWGSTTDQ 397
Query: 467 ----VGGWDSQKVGVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDWKSNRPPRSAD 634
GGW SD+Q N WG GD + R D
Sbjct: 398 AASSGGGWGG------SSDQQ----------------NGNSWGGGGSGDGQRGRGRGRGD 435
Query: 635 DSNRG 649
+RG
Sbjct: 436 RGDRG 440
Score = 68.6 bits (166), Expect = 2e-09
Identities = 57/216 (26%), Positives = 79/216 (36%), Gaps = 13/216 (6%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKKVDEP 187
+GGS G D+ GG WG T + P +G W S A + G WG E
Sbjct: 506 NGGSWGGSSNDQGGGGWGS--STTDQP-----ASNGGWGSTATEQPQSNG-GWGSTATE- 556
Query: 188 ENNPHQSQSGSWSSLGKKVEKDGGSW--DGPKQSNSDSSWGKAT-----KGGGLGSTTAE 346
+Q+G W S + G W +Q WG T GG GST E
Sbjct: 557 ----QPAQTGGWGSTATEKPAQNGGWGSTATEQPQQSGGWGSTTTEQPQASGGWGSTATE 612
Query: 347 GNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTV-----GGWDSQKVGVEESD 511
+ + + +G + + GGW SS GGW S ++S+
Sbjct: 613 QPAQNGGWGSTTTEQPAQNGGWGSTATEQPAQTGGWGSSDAPQQSNGGWGSSNNDQQQSN 672
Query: 512 KQPQWGQRRRNSRGDFKE-NSRGWGSASGGDWKSNR 616
WG + S G+ + RG G GGD +R
Sbjct: 673 ---GWGSSNQQSNGNGERGRGRGRGRGRGGDRGGDR 705
Score = 63.9 bits (154), Expect = 5e-08
Identities = 57/229 (24%), Positives = 83/229 (36%), Gaps = 18/229 (7%)
Frame = +2
Query: 11 GGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKK-VDEP 187
G G + D+ GG G + + SG+ SW GG WG D+P
Sbjct: 481 GRGDRGDRGDRRGGFRGGR----------DNDNSGNGGSWGGSSNDQGGGGWGSSTTDQP 530
Query: 188 ENNPHQSQSGSWSSLGKKVEKDGGSW--DGPKQSNSDSSWG-----KATKGGGLGSTTAE 346
+N G W S + + G W +Q WG K + GG GST E
Sbjct: 531 ASN------GGWGSTATEQPQSNGGWGSTATEQPAQTGGWGSTATEKPAQNGGWGSTATE 584
Query: 347 GNRRLDQSINDWNGSSS----GDGQLNESTRDDSTNIGGWNSSTV------GGWDSQKVG 496
Q W +++ G + + GGW S+T GGW S
Sbjct: 585 ----QPQQSGGWGSTTTEQPQASGGWGSTATEQPAQNGGWGSTTTEQPAQNGGWGS--TA 638
Query: 497 VEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDWKSNRPPRSADDSN 643
E+ + WG S ++++ GWGS++ +SN S SN
Sbjct: 639 TEQPAQTGGWG-----SSDAPQQSNGGWGSSNNDQQQSNGWGSSNQQSN 682
Score = 57.8 bits (138), Expect = 3e-06
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 18/217 (8%)
Frame = +2
Query: 59 GEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWG---KKVDEPEN--NPHQSQSGSW 223
GE ++P G++ +G V+K WG KK ++ N N ++SG W
Sbjct: 11 GEVKPVDSTPVWGGEQNAGGQQ--IDEVKKTQEPQWGQDEKKENQETNAQNGTAAESGGW 68
Query: 224 SSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRRLDQSINDW-NGSSSG 400
G + ++ SW K N+D++WG T G G ST G W NG SS
Sbjct: 69 ---GNQPQQQSSSWGETKTDNNDNAWGSGTTGFGSTSTGDNGGSSWGGGSTSWGNGGSSD 125
Query: 401 DGQLNESTR-----DDSTNIGGWNSSTVGGWDSQKVGVE----ESDKQPQWGQRRRNSRG 553
+ ++ R D GG+ G + + + D+ + G R R RG
Sbjct: 126 NNFQSDRPRGRGRGDRGDRGGGYRGRGDRGGEGFRGRGDGFRGRGDRGDRGGFRGRGDRG 185
Query: 554 DFKENSRG---WGSASGGDWKSNRPPRSADDSNRGVN 655
+ + RG G +GG W N + ++ G N
Sbjct: 186 GDRGDRRGGFRGGRDNGGSWGGNSSNNNGGGNSWGGN 222
>emb|CAI45859.1| NOWA1 protein [Paramecium tetraurelia]
Length = 1024
Score = 79.0 bits (193), Expect = 1e-12
Identities = 67/245 (27%), Positives = 91/245 (37%), Gaps = 33/245 (13%)
Frame = +2
Query: 14 GSSWGQKVDKD--GGSWGEKVETKNSPQLSG---------KEQSGSWSSWAKPVEKDGGS 160
GSSWG +KD GG WG T P SG QSG W + + +
Sbjct: 225 GSSWGNSDNKDNAGGGWGS-TSTNEQPAQSGGWGSTTTEQPAQSGGWGNSTEQPVQQASE 283
Query: 161 SWGKKVDEPENNPHQSQSGSWSSLGKKVEKDGGSWDG-----PKQSNSDSSWGKATK--- 316
WG K ++P +Q G ++ + ++ GG W KQSN WG +T+
Sbjct: 284 GWGSKTEQPPQQAESNQGGWGTTTEQSNQQSGGGWGSTTEQPQKQSN---GWGNSTQEQQ 340
Query: 317 -----GGGLGSTTAEGNRRLDQSINDWNGSSSGDGQLN---ESTRDDSTNIGGWNSST-- 466
GG GS+ E + QS W S++ ST + +T GGW S+T
Sbjct: 341 PQQSGAGGWGSSNTE---QPAQSSGGWGASTTEQPATTGGWGSTTEQATTSGGWGSTTDQ 397
Query: 467 ----VGGWDSQKVGVEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDWKSNRPPRSAD 634
GGW SD+Q N WG GD + R D
Sbjct: 398 AASSGGGWGG------SSDQQ----------------NGNSWGGGGSGDGQRGRGRGRGD 435
Query: 635 DSNRG 649
+RG
Sbjct: 436 RGDRG 440
Score = 68.6 bits (166), Expect = 2e-09
Identities = 57/216 (26%), Positives = 79/216 (36%), Gaps = 13/216 (6%)
Frame = +2
Query: 8 DGGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKKVDEP 187
+GGS G D+ GG WG T + P +G W S A + G WG E
Sbjct: 506 NGGSWGGSSNDQGGGGWGS--STTDQP-----ASNGGWGSTATEQPQSNG-GWGSTATE- 556
Query: 188 ENNPHQSQSGSWSSLGKKVEKDGGSW--DGPKQSNSDSSWGKAT-----KGGGLGSTTAE 346
+Q+G W S + G W +Q WG T GG GST E
Sbjct: 557 ----QPAQTGGWGSTATEKPAQNGGWGSTATEQPQQSGGWGSTTTEQPQASGGWGSTATE 612
Query: 347 GNRRLDQSINDWNGSSSGDGQLNESTRDDSTNIGGWNSSTV-----GGWDSQKVGVEESD 511
+ + + +G + + GGW SS GGW S ++S+
Sbjct: 613 QPAQNGGWGSTTTEQPAQNGGWGSTATEQPAQTGGWGSSDAPQQSNGGWGSSNNDQQQSN 672
Query: 512 KQPQWGQRRRNSRGDFKE-NSRGWGSASGGDWKSNR 616
WG + S G+ + RG G GGD +R
Sbjct: 673 ---GWGSSNQQSNGNGERGRGRGRGRGRGGDRGGDR 705
Score = 63.9 bits (154), Expect = 5e-08
Identities = 57/229 (24%), Positives = 83/229 (36%), Gaps = 18/229 (7%)
Frame = +2
Query: 11 GGSSWGQKVDKDGGSWGEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWGKK-VDEP 187
G G + D+ GG G + + SG+ SW GG WG D+P
Sbjct: 481 GRGDRGDRGDRRGGFRGGR----------DNDNSGNGGSWGGSSNDQGGGGWGSSTTDQP 530
Query: 188 ENNPHQSQSGSWSSLGKKVEKDGGSW--DGPKQSNSDSSWG-----KATKGGGLGSTTAE 346
+N G W S + + G W +Q WG K + GG GST E
Sbjct: 531 ASN------GGWGSTATEQPQSNGGWGSTATEQPAQTGGWGSTATEKPAQNGGWGSTATE 584
Query: 347 GNRRLDQSINDWNGSSS----GDGQLNESTRDDSTNIGGWNSSTV------GGWDSQKVG 496
Q W +++ G + + GGW S+T GGW S
Sbjct: 585 ----QPQQSGGWGSTTTEQPQASGGWGSTATEQPAQNGGWGSTTTEQPAQNGGWGS--TA 638
Query: 497 VEESDKQPQWGQRRRNSRGDFKENSRGWGSASGGDWKSNRPPRSADDSN 643
E+ + WG S ++++ GWGS++ +SN S SN
Sbjct: 639 TEQPAQTGGWG-----SSDAPQQSNGGWGSSNNDQQQSNGWGSSNQQSN 682
Score = 57.8 bits (138), Expect = 3e-06
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 18/217 (8%)
Frame = +2
Query: 59 GEKVETKNSPQLSGKEQSGSWSSWAKPVEKDGGSSWG---KKVDEPEN--NPHQSQSGSW 223
GE ++P G++ +G V+K WG KK ++ N N ++SG W
Sbjct: 11 GEVKPVDSTPVWGGEQNAGGQQ--IDEVKKTQEPQWGQDEKKENQETNAQNGTAAESGGW 68
Query: 224 SSLGKKVEKDGGSWDGPKQSNSDSSWGKATKGGGLGSTTAEGNRRLDQSINDW-NGSSSG 400
G + ++ SW K N+D++WG T G G ST G W NG SS
Sbjct: 69 ---GNQPQQQSSSWGETKTDNNDNAWGSGTTGFGSTSTGDNGGSSWGGGSTSWGNGGSSD 125
Query: 401 DGQLNESTR-----DDSTNIGGWNSSTVGGWDSQKVGVE----ESDKQPQWGQRRRNSRG 553
+ ++ R D GG+ G + + + D+ + G R R RG
Sbjct: 126 NNFQSDRPRGRGRGDRGDRGGGYRGRGDRGGEGFRGRGDGFRGRGDRGDRGGFRGRGDRG 185
Query: 554 DFKENSRG---WGSASGGDWKSNRPPRSADDSNRGVN 655
+ + RG G +GG W N + ++ G N
Sbjct: 186 GDRGDRRGGFRGGRDNGGSWGGNSSNNNGGGNSWGGN 222
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 78.6 bits (192), Expect = 2e-12
Identities = 76/285 (26%), Positives = 121/285 (42%), Gaps = 58/285 (20%)
Frame = +2
Query: 17 SSWGQKVDKDGGSW----GEKVETKNSPQLSGKEQSGSWSSWA----KPVEKDGGSSWGK 172
S+W + + G W G KVE+ + E W+ ++ KP ++ GS WG
Sbjct: 1579 STWRTSTESENG-WSGRGGSKVESTDVQSQKAVENPKGWNDFSAGVRKPQTENAGSGWGM 1637
Query: 173 K---------VDEPENNPHQ--------SQSGSWSSLGKKVEKDGGSWDGPKQSN-SDSS 298
K +++ E+ H S G+W K + G+W+ PK + S +
Sbjct: 1638 KGSEKKGDIELEQDESTRHSWKQKSADASSQGAWERQ-KSPDTSKGTWEQPKSAEMSHGA 1696
Query: 299 WGKATKGG------GL---GSTTAEGNRRLDQSIN----DWNGSSSGDGQLNEST----R 427
WG+ GL ST ++G+ +S +W +S D +++ T +
Sbjct: 1697 WGQQKSPDVSQGVWGLEKPASTNSQGSWGQQKSPEIPQGNWGQQTSPD--ISQGTWGQQK 1754
Query: 428 DDSTNIGGWNS---------STVGGWDSQKVGVEESDKQPQWGQRRRNSRGDFKENSRGW 580
+ G W +TV WDSQ E + QWG +++ E R W
Sbjct: 1755 SPEMSQGSWGQQKPSDTSQPATVNQWDSQSEAAVE--RHQQWGHNGDSNKRKRFEGGRSW 1812
Query: 581 GSASGGDWK--SNRPPRSA----DDSNRGVNLTATRQKLDIFTAE 697
G + G+WK ++RP +S DDS+ TATRQ+LDIFT+E
Sbjct: 1813 GP-NAGEWKGKNSRPAKSPGMVNDDSSVAAIYTATRQRLDIFTSE 1856