BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00034534
         (594 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...    80   3e-13
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    51   3e-10
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]    50   1e-09
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...    45   3e-09
ref|WP_010863388.1| hypothetical protein, partial [Plesiomonas s...    66   6e-09
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    46   2e-08
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]      44   1e-07
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      43   1e-07
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    42   2e-07
ref|XP_001813413.1| PREDICTED: similar to copia-type polyprotein...    49   3e-07
gb|EFA06256.1| hypothetical protein TcasGA2_TC009115 [Tribolium ...    49   3e-07
gb|ABF81452.1| TIR-NBS type disease resistance protein [Populus ...    60   4e-07
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    42   5e-07
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]               40   5e-07
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]               40   5e-07
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]               40   5e-07
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      42   5e-07
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      40   5e-07
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]          40   6e-07
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]      41   8e-07

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
 Frame = +1

Query: 61   EEELVEREIPTQKPQQLES-IATSKLKRTIKKPTRLIDMVACAASIIAVGIPITYKDVVQ 237
            EEE  E E+PTQ+ QQ  + IA  + +R I+KP+R +DMVA A  ++   IP TY + + 
Sbjct: 740  EEESDEEEVPTQESQQQSAPIAVRRQRRDIQKPSRFMDMVAYALPVVD-DIPSTYPEAIM 798

Query: 238  SSEEDKWRIAINEKMHPLHQNLT*NWPISR--KIKKQLGANEHRQIKMKFLNQKDVRYKA 411
            SSE   W  A+ E+M  L +N T  W +++  K KK +G       K +F N++DVRYKA
Sbjct: 799  SSESGNWAGAMEEEMQSLKKNKT--WKLAQLPKGKKAIGCKWVFAKKEEFSNKEDVRYKA 856

Query: 412  K 414
            +
Sbjct: 857  R 857


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 51.2 bits (121), Expect(2) = 3e-10
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
 Frame = +1

Query: 61   EEELVEREIPTQKPQQL-ESIATSKLKRT-IKKPTR--LIDMVACAASI---IAVGIPIT 219
            +E   E +IP   P  + +SIA  + +R  ++ PTR    DMV  A  +   +    P T
Sbjct: 734  QEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPST 793

Query: 220  YKDVVQSSEEDKWRIAINEKMHPLHQNLT*NWPISRKIKKQLGANEHRQIKMKFLNQKDV 399
            YK+ + SS+ +KW  A+ ++M  LH+N T +  I    +K +      + K      + V
Sbjct: 794  YKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGV 853

Query: 400  RYKAKI 417
            +YKA++
Sbjct: 854  KYKARV 859



 Score = 39.7 bits (91), Expect(2) = 3e-10
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K R+V +G+ Q+E ++YNE F  VV+H+ IR                   T +L   LEE
Sbjct: 856  KARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEE 915

Query: 587  KI 592
            +I
Sbjct: 916  EI 917


>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score = 50.4 bits (119), Expect(2) = 1e-09
 Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
 Frame = +1

Query: 40  KIEIFSLEEELVEREIPTQKPQQLESIATSKLKRTIKKPTRL-IDMVACAASIIAVGIPI 216
           ++E   +E+        + + QQ  SIA  K +RTIK PTR   + +   A I +   PI
Sbjct: 103 ELETHDIEDHARNARKSSSEDQQHHSIAIDKPRRTIKPPTRYGFEDLVSYALITSSKDPI 162

Query: 217 TYKDVVQSSEEDKWRIAINEKMHPLHQNLT*NWPISRKIKKQLGANEHRQIKMKFLNQKD 396
           T+++ + + E+ +W  A+ E++  LH+N T +     + K+ +G     + K     ++ 
Sbjct: 163 TFQEAIHNQEKSRWMGAMVEEIQFLHKNQTWDLVEPPEGKRAIGCKWVYKKKEAISKKEG 222

Query: 397 VRYKAKI 417
            ++KA++
Sbjct: 223 EKFKARL 229



 Score = 38.1 bits (87), Expect(2) = 1e-09
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +2

Query: 407 KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
           K RLV KGY+Q++ ++Y+E F  +V+H+ IR                   T +L   LEE
Sbjct: 226 KARLVAKGYSQRKGVDYDEIFSPMVRHTSIRTVLGLVAHFDMQLEQMDVETTFLHGDLEE 285

Query: 587 KI 592
            +
Sbjct: 286 LV 287


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score = 44.7 bits (104), Expect(3) = 3e-09
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
 Frame = +1

Query: 67   ELVEREIPTQKPQQLESIATSKLKRTIKKPTRLI---DMV----ACAASIIAVGIPITYK 225
            + V+   P  +PQ  E IA  + KR+   P RLI   DMV    +CA  +     P TY 
Sbjct: 752  DTVQHSPPVLQPQD-EPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYT 810

Query: 226  DVVQSSEEDKWRIAINEKMHPLHQNLT 306
            + V S + +KW  A+ E+M  L +N T
Sbjct: 811  EAVVSGDREKWISAMQEEMQSLEKNGT 837



 Score = 39.3 bits (90), Expect(3) = 3e-09
 Identities = 23/62 (37%), Positives = 30/62 (48%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K RLV KG++Q   ++YN+ F  VVKHS IR                   T +L   LEE
Sbjct: 871  KARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEE 930

Query: 587  KI 592
            +I
Sbjct: 931  EI 932



 Score = 22.7 bits (47), Expect(3) = 3e-09
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 309 KLANFPKDKKAIGCK*T*ANKDEISQSK 392
           +L + PK KK + CK     K+ +S S+
Sbjct: 839 ELVHLPKQKKPVRCKWIFKRKEGLSPSE 866


>ref|WP_010863388.1| hypothetical protein, partial [Plesiomonas shigelloides]
           gi|499066378|gb|EON88779.1| hypothetical protein
           PLESHI_08829, partial [Plesiomonas shigelloides 302-73]
          Length = 112

 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 36/84 (42%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
 Frame = +1

Query: 58  LEEELVEREIPTQKPQQ-LESIATSKLKRTIKKPTRLIDMVACAASIIAVGIPITYKDVV 234
           ++EE +E E+ T++PQQ LESIA  + KRT++ P R  + VA A+ +    +  TY++ V
Sbjct: 20  VDEESIEEEVDTEEPQQQLESIANRRPKRTMRVPARYANTVAEASVLEIHEVLTTYQEAV 79

Query: 235 QSSEEDKWRIAINEKMHPLHQNLT 306
            +SE  KWRIA+ E+M  L +N T
Sbjct: 80  NNSEGAKWRIAMEEEMKSLDKNKT 103


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 46.2 bits (108), Expect(2) = 2e-08
 Identities = 26/62 (41%), Positives = 31/62 (50%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K RLV KG++QKE I+YNE F  VVKH  IR                   T +L   LEE
Sbjct: 979  KSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEE 1038

Query: 587  KI 592
            +I
Sbjct: 1039 EI 1040



 Score = 38.1 bits (87), Expect(2) = 2e-08
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
 Frame = +1

Query: 82   EIPTQKPQQLESIATSKLKRTIKKPTRLIDMVAC-----------AASIIAVGIPITYKD 228
            E P       +SIA  + +R I++P R +D V+             A  I    P +YK+
Sbjct: 860  EQPVIDQNDSQSIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKE 919

Query: 229  VVQSSEEDKWRIAINEKMHPLHQNLT 306
             ++S +  KW  +++++M  L +N T
Sbjct: 920  AMESKDSKKWLSSMDDEMASLRKNQT 945


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score = 43.9 bits (102), Expect(2) = 1e-07
 Identities = 25/62 (40%), Positives = 31/62 (50%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K RLV KGY+QKE ++Y+E F  VVKH+ IR                   T +L   LEE
Sbjct: 847  KARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEE 906

Query: 587  KI 592
             I
Sbjct: 907  DI 908



 Score = 38.1 bits (87), Expect(2) = 1e-07
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
 Frame = +1

Query: 94   QKPQQLE-SIATSKLKRTIKKPTRL----IDMVACAASIIAVGIPITYKDVVQSSEEDKW 258
            Q P+  + SIA  K KR  K   R      + V+ A SI + G P TY+D ++S E   W
Sbjct: 739  QAPESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALSI-SQGDPTTYEDAIESVESAGW 797

Query: 259  RIAINEKMHPLHQNLT*NWPISRKIKKQLGANEHRQIKMKFLNQKDVRYKAKI 417
              A+ E+M  LH+N         K +K +G     + K        + YKA++
Sbjct: 798  IGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARL 850


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 42.7 bits (99), Expect(2) = 1e-07
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
 Frame = +1

Query: 76   EREIPTQKPQQLESIATSKLKRTIKKPTRLIDMVACAASIIAVGI-------PITYKDVV 234
            +  I  Q P++  SIA  K KR IK P R I+     A  ++V         P TY + +
Sbjct: 738  DSSIVHQSPKR--SIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAI 795

Query: 235  QSSEEDKWRIAINEKMHPLHQNLT*NWPISR--KIKKQLGANEHRQIKMKFLNQKDVRYK 408
             S + ++W  A++++M  L +N T  W + +  K KK +      + K       + RYK
Sbjct: 796  VSDDCNRWITAMHDEMESLEKNHT--WELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYK 853

Query: 409  AKI 417
            A++
Sbjct: 854  ARL 856



 Score = 39.3 bits (90), Expect(2) = 1e-07
 Identities = 24/62 (38%), Positives = 29/62 (46%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K RLV KGY+Q   I++N+ F  VVKHS IR                   T +L   LEE
Sbjct: 853  KARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEE 912

Query: 587  KI 592
             I
Sbjct: 913  DI 914


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 42.4 bits (98), Expect(2) = 2e-07
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
 Frame = +1

Query: 85   IPTQKPQQLESIATSKLKRTIKKPTRLIDMVACAASIIAVGI-------PITYKDVVQSS 243
            I  Q P++  SIA  + KR IK P R I+     A  ++V         P TY + + S 
Sbjct: 976  IVQQSPKR--SIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSD 1033

Query: 244  EEDKWRIAINEKMHPLHQNLT*NWPISR--KIKKQLGANEHRQIKMKFLNQKDVRYKAKI 417
            + ++W  A++++M  L +N T  W + +  K KK +      + K    +  + RYKA++
Sbjct: 1034 DCNRWITAMHDEMESLEKNHT--WELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARL 1091



 Score = 38.9 bits (89), Expect(2) = 2e-07
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K RL+ KGY+Q   I++N+ F  VVKHS IR                   T +L   LEE
Sbjct: 1088 KARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEE 1147

Query: 587  KI 592
             I
Sbjct: 1148 DI 1149


>ref|XP_001813413.1| PREDICTED: similar to copia-type polyprotein, putative [Tribolium
            castaneum]
          Length = 1269

 Score = 48.5 bits (114), Expect(2) = 3e-07
 Identities = 32/94 (34%), Positives = 51/94 (54%)
 Frame = +1

Query: 136  KRTIKKPTRLIDMVACAASIIAVGIPITYKDVVQSSEEDKWRIAINEKMHPLHQNLT*NW 315
            +  +K P  L D V    +I+    P TY + + SSE ++WR AI E++  L +N T N 
Sbjct: 745  REILKTPNNLDDYVI---NIVEGDTPNTYDEAITSSESEEWRNAIQEELDALKKNDTWNL 801

Query: 316  PISRKIKKQLGANEHRQIKMKFLNQKDVRYKAKI 417
                  KK +G+    +IK +  N K++RYKA++
Sbjct: 802  VNLPVDKKAIGSKWVFKIK-RSPNNKNIRYKARL 834



 Score = 32.0 bits (71), Expect(2) = 3e-07
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K RL  KG+ Q E ++YNE +    ++  IR                   T +L   LEE
Sbjct: 831  KARLCAKGFAQTEGVDYNETYAPTTRYDTIRILLAVAARENYQMIQFDVKTAFLHGELEE 890

Query: 587  KI 592
             I
Sbjct: 891  NI 892


>gb|EFA06256.1| hypothetical protein TcasGA2_TC009115 [Tribolium castaneum]
          Length = 1267

 Score = 48.5 bits (114), Expect(2) = 3e-07
 Identities = 32/94 (34%), Positives = 51/94 (54%)
 Frame = +1

Query: 136  KRTIKKPTRLIDMVACAASIIAVGIPITYKDVVQSSEEDKWRIAINEKMHPLHQNLT*NW 315
            +  +K P  L D V    +I+    P TY + + SSE ++WR AI E++  L +N T N 
Sbjct: 745  REILKTPNNLDDYVI---NIVEGDTPNTYDEAITSSESEEWRNAIQEELDALKKNDTWNL 801

Query: 316  PISRKIKKQLGANEHRQIKMKFLNQKDVRYKAKI 417
                  KK +G+    +IK +  N K++RYKA++
Sbjct: 802  VNLPVDKKAIGSKWVFKIK-RSPNNKNIRYKARL 834



 Score = 32.0 bits (71), Expect(2) = 3e-07
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K RL  KG+ Q E ++YNE +    ++  IR                   T +L   LEE
Sbjct: 831  KARLCAKGFAQTEGVDYNETYAPTTRYDTIRILLAVAARENYQMIQFDVKTAFLHGELEE 890

Query: 587  KI 592
             I
Sbjct: 891  NI 892


>gb|ABF81452.1| TIR-NBS type disease resistance protein [Populus trichocarpa]
          Length = 1309

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 34/65 (52%), Positives = 39/65 (60%)
 Frame = +1

Query: 61  EEELVEREIPTQKPQQLESIATSKLKRTIKKPTRLIDMVACAASIIAVGIPITYKDVVQS 240
           +E   E +  T    Q ESIATSK KR IKKP R  +MVA A  +I  GIP TYK+ VQS
Sbjct: 42  DESSDEEDATTPATTQQESIATSKPKRVIKKPARYCNMVAYALPVIDDGIPYTYKEAVQS 101

Query: 241 SEEDK 255
            E  K
Sbjct: 102 VERKK 106


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score = 42.0 bits (97), Expect(2) = 5e-07
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
 Frame = +1

Query: 115  SIATSKLKRTIKKPTRLIDMVACAASIIAVGI-------PITYKDVVQSSEEDKWRIAIN 273
            SIA  K KR IK P R I+     A  ++V         P TY + + S + ++W  A++
Sbjct: 812  SIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMH 871

Query: 274  EKMHPLHQNLT*NWPISRKIKKQLGANEHRQIKMKFLNQKDVRYKAKI 417
            ++M  L +N T  +    K KK +      + K       + RYKA++
Sbjct: 872  DEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARL 919



 Score = 37.7 bits (86), Expect(2) = 5e-07
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K RLV KGY+Q   I++N+ F  ++KHS IR                   T +L   LEE
Sbjct: 916  KARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEE 975

Query: 587  KI 592
             I
Sbjct: 976  DI 977


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 40.0 bits (92), Expect(2) = 5e-07
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
 Frame = +1

Query: 19   QHKEKTKKIEIFSLEEELVEREIPTQKPQQLESIATSKLKRTIKKPTRLIDMVACAAS-- 192
            Q +EK+K+ +  S E E V  E   Q+P  +        ++T +KP+   D V  +    
Sbjct: 726  QMEEKSKESD--SSEAESVHEE---QEPDDVNDGVRRSTRQT-QKPSWQSDYVMTSHDAY 779

Query: 193  --IIAVGIPITYKDVVQSSEEDKWRIAINEKMHPLHQNLT*NWPISRKIKKQLGANEHRQ 366
              I   G P T+ + +  S+  +W  A++E+M  LH+N T       K +K +G     +
Sbjct: 780  CLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYK 839

Query: 367  IKMKFLNQKDVRYKAKI 417
            IK    +Q + RY+A++
Sbjct: 840  IKRDGNDQVE-RYRARL 855



 Score = 39.7 bits (91), Expect(2) = 5e-07
 Identities = 24/62 (38%), Positives = 31/62 (50%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            + RLVVKGY QKE I++NE F  VV+ + IR                   T +L   LEE
Sbjct: 852  RARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEE 911

Query: 587  KI 592
            +I
Sbjct: 912  EI 913


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 40.0 bits (92), Expect(2) = 5e-07
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
 Frame = +1

Query: 19   QHKEKTKKIEIFSLEEELVEREIPTQKPQQLESIATSKLKRTIKKPTRLIDMVACAAS-- 192
            Q +EK+K+ +  S E E V  E   Q+P  +        ++T +KP+   D V  +    
Sbjct: 726  QMEEKSKESD--SSEAESVHEE---QEPDDVNDGVRRSTRQT-QKPSWQSDYVMTSHDAY 779

Query: 193  --IIAVGIPITYKDVVQSSEEDKWRIAINEKMHPLHQNLT*NWPISRKIKKQLGANEHRQ 366
              I   G P T+ + +  S+  +W  A++E+M  LH+N T       K +K +G     +
Sbjct: 780  CLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYK 839

Query: 367  IKMKFLNQKDVRYKAKI 417
            IK    +Q + RY+A++
Sbjct: 840  IKRDGNDQVE-RYRARL 855



 Score = 39.7 bits (91), Expect(2) = 5e-07
 Identities = 24/62 (38%), Positives = 31/62 (50%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            + RLVVKGY QKE I++NE F  VV+ + IR                   T +L   LEE
Sbjct: 852  RARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEE 911

Query: 587  KI 592
            +I
Sbjct: 912  EI 913


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 40.0 bits (92), Expect(2) = 5e-07
 Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
 Frame = +1

Query: 19   QHKEKTKKIEIFSLEEELVEREIPTQKPQQLESIATSKLKRTIKKPTRLIDMVACAAS-- 192
            Q +EK+K+ +  S E E V  E   Q+P  + +      ++T +KP+   D V  +    
Sbjct: 726  QMEEKSKESD--SSEAEPVHEE---QEPDDVNNGVRRSTRQT-QKPSWQSDYVMTSHDAY 779

Query: 193  --IIAVGIPITYKDVVQSSEEDKWRIAINEKMHPLHQNLT*NWPISRKIKKQLGANEHRQ 366
              I   G P T+ + +  S+  +W  A++E+M  LH+N T       K +K +G     +
Sbjct: 780  CLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYK 839

Query: 367  IKMKFLNQKDVRYKAKI 417
            IK    +Q + RY+A++
Sbjct: 840  IKRDGNDQVE-RYRARL 855



 Score = 39.7 bits (91), Expect(2) = 5e-07
 Identities = 24/62 (38%), Positives = 31/62 (50%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            + RLVVKGY QKE I++NE F  VV+ + IR                   T +L   LEE
Sbjct: 852  RARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEE 911

Query: 587  KI 592
            +I
Sbjct: 912  EI 913


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 42.0 bits (97), Expect(2) = 5e-07
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
 Frame = +1

Query: 115  SIATSKLKRTIKKPTRLIDMVACAASIIAVGI-------PITYKDVVQSSEEDKWRIAIN 273
            SIA  K KR IK P R I+     A  ++V         P TY + + S + ++W  A++
Sbjct: 812  SIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMH 871

Query: 274  EKMHPLHQNLT*NWPISRKIKKQLGANEHRQIKMKFLNQKDVRYKAKI 417
            ++M  L +N T  +    K KK +      + K       + RYKA++
Sbjct: 872  DEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARL 919



 Score = 37.7 bits (86), Expect(2) = 5e-07
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = +2

Query: 407  KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
            K RLV KGY+Q   I++N+ F  ++KHS IR                   T +L   LEE
Sbjct: 916  KARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEE 975

Query: 587  KI 592
             I
Sbjct: 976  DI 977


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 40.4 bits (93), Expect(2) = 5e-07
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
 Frame = +1

Query: 76   EREIPTQKPQQLESIATSKLKRTIKKPTRLIDMVACAASIIAVGI-------PITYKDVV 234
            +  I  Q P++  SIA  + KR  K P R I+     A  ++V         P TY D +
Sbjct: 675  DSSIVQQSPKR--SIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAI 732

Query: 235  QSSEEDKWRIAINEKMHPLHQNLT*NWPISR--KIKKQLGANEHRQIKMKFLNQKDVRYK 408
             S + ++W  A++++M  L +N   +W + +  K KK +      + K       + RYK
Sbjct: 733  VSDDCNRWITAMHDEMESLEKNH--SWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYK 790

Query: 409  AKI 417
            A++
Sbjct: 791  ARL 793



 Score = 39.3 bits (90), Expect(2) = 5e-07
 Identities = 24/62 (38%), Positives = 29/62 (46%)
 Frame = +2

Query: 407 KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
           K RLV KGY+Q   I++N+ F  VVKHS IR                   T +L   LEE
Sbjct: 790 KARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEE 849

Query: 587 KI 592
            I
Sbjct: 850 DI 851


>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
          Length = 621

 Score = 40.0 bits (92), Expect(2) = 6e-07
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
 Frame = +1

Query: 76  EREIPTQKPQQLESIATSKLKRTIKKPTRLIDMVACAASIIAVGI-------PITYKDVV 234
           ER+   Q P++  SIA  K KR+ K P R I+     A  ++V         P TY + +
Sbjct: 152 ERQHHEQSPKR--SIAKEKPKRSTKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAI 209

Query: 235 QSSEEDKWRIAINEKMHPLHQNLT*NWPISR--KIKKQLGANEHRQIKMKFLNQKDVRYK 408
            S + ++W  A++++M  L +N T  W + +  K KK +      + K       +  YK
Sbjct: 210 VSDDCNRWITAMHDEMESLEKNHT--WELVKLPKEKKPIRCKWIFKRKECISPSDEAMYK 267

Query: 409 AKI 417
           A++
Sbjct: 268 ARL 270



 Score = 39.3 bits (90), Expect(2) = 6e-07
 Identities = 24/62 (38%), Positives = 29/62 (46%)
 Frame = +2

Query: 407 KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
           K RLV KGY+Q   I++N+ F  VVKHS IR                   T +L   LEE
Sbjct: 267 KARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEE 326

Query: 587 KI 592
            I
Sbjct: 327 DI 328


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score = 40.8 bits (94), Expect(2) = 8e-07
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
 Frame = +1

Query: 94  QKPQQLESIATSKLKRTIKKPTRLIDMVACAASIIAVGI-------PITYKDVVQSSEED 252
           Q P++  SIA  K KR IK P R I+     A  ++V         P TY + + S   +
Sbjct: 651 QSPKR--SIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDGCN 708

Query: 253 KWRIAINEKMHPLHQNLT*NWPISR--KIKKQLGANEHRQIKMKFLNQKDVRYKAKI 417
           +W  A++++M  L +N T  W + +  K KK +      + K       + RYKA++
Sbjct: 709 RWITAMHDEMESLEKNHT--WELVKLPKEKKPIRCKWIFKRKKGMSPSDEARYKARL 763



 Score = 38.1 bits (87), Expect(2) = 8e-07
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +2

Query: 407 KQRLVVKGYTQKEKINYNEAFFSVVKHSFIRXXXXXXXXXXXXXXXXXXXTIYLDRGLEE 586
           K RLV KGY+Q   I++N+ F  V+KHS IR                   T +L   LEE
Sbjct: 760 KARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEE 819

Query: 587 KI 592
            I
Sbjct: 820 DI 821