BLASTX nr result
ID: Atropa21_contig00034163
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00034163
(757 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein A... 55 6e-16
ref|XP_006338209.1| PREDICTED: putative ribonuclease H protein A... 52 2e-12
ref|XP_006355175.1| PREDICTED: putative ribonuclease H protein A... 53 4e-12
ref|XP_006367640.1| PREDICTED: putative ribonuclease H protein A... 55 5e-12
ref|XP_006343440.1| PREDICTED: uncharacterized protein LOC102595... 54 2e-11
ref|XP_006358721.1| PREDICTED: uncharacterized protein LOC102596... 49 2e-09
ref|XP_006338863.1| PREDICTED: uncharacterized protein LOC102579... 46 1e-08
ref|XP_004233852.1| PREDICTED: uncharacterized protein LOC101253... 51 5e-08
ref|XP_006354689.1| PREDICTED: uncharacterized protein LOC102605... 44 2e-07
ref|XP_006358679.1| PREDICTED: uncharacterized protein LOC102578... 50 2e-06
ref|XP_006344597.1| PREDICTED: uncharacterized protein LOC102605... 48 3e-06
>ref|XP_006356603.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 885
Score = 55.5 bits (132), Expect(2) = 6e-16
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Frame = -1
Query: 757 RAQVKVTKVT*HPPPRGWIMCNTDG----NPGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
+ ++ V +VT PP ++ NTDG NPG ++ FC+RD++GD+I+A+AK +G TN
Sbjct: 690 KRKIHVLRVTWKPPDDHYVKSNTDGACRGNPGLSSFGFCIRDDKGDLIYAKAKGIGIATN 749
Score = 55.5 bits (132), Expect(2) = 6e-16
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = -3
Query: 548 CDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIVGYIEEIKQLEGGKQCTHSHMLREGINY 369
C +++M K+II+TDSL +++I+ + W+ PW I +EEI+++ + +H+ REG N
Sbjct: 764 CSNRKMQKVIIETDSLSLKKIIQQTWRVPWKIAEKVEEIREIMEKIKAKITHIFREG-NS 822
Query: 368 LMH*LTKHLIQGQYTVNY 315
L L I+ Q Y
Sbjct: 823 LADSLANIAIESQAEHQY 840
>ref|XP_006338209.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 198
Score = 52.0 bits (123), Expect(2) = 2e-12
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = -3
Query: 551 WCDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIVGYIEEIKQLEGGKQCTHSHMLREG 378
+C +K+M KII+++DSLLM +I+NE WK W I +E+KQ + H+ REG
Sbjct: 82 YCVNKKMRKIILESDSLLMVKIINEAWKVLWVIAEEFDELKQEMTKIEVKTQHIYREG 139
Score = 47.4 bits (111), Expect(2) = 2e-12
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -1
Query: 718 PPRGWIMCNTDG----NPGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
P I CNTDG NPG AY +C+R+ GD+IH A+ +G TN
Sbjct: 22 PHEDVIKCNTDGASKGNPGISAYGYCLRNSNGDLIHVTAENIGITTN 68
>ref|XP_006355175.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 143
Score = 53.1 bits (126), Expect(2) = 4e-12
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Frame = -1
Query: 721 PPPRGWIMCNTDG----NPGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
PP GWI CNTDG NP + +Y FC+R+ G++++A+ + +G TN
Sbjct: 21 PPEIGWIKCNTDGASKGNPDQSSYGFCIRNHTGELLYAEVQSIGVTTN 68
Score = 45.1 bits (105), Expect(2) = 4e-12
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = -3
Query: 551 WCDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIVGYIEEIKQLEGGKQCTHSHMLRE 381
+C + ++ ++TDSL ++ IL WK+PW +V +E+I ++ T H+ RE
Sbjct: 82 YCLSQGFQQVSLETDSLTLKNILVRNWKTPWELVERVEDILEIMSHMDVTIKHIFRE 138
>ref|XP_006367640.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 1035
Score = 55.1 bits (131), Expect(2) = 5e-12
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Frame = -1
Query: 718 PPRGWIMCNTDG----NPGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
P GW+ CNTDG NP +Y +C+RD+ GD+++A+A +G TN
Sbjct: 674 PSEGWVTCNTDGASKGNPRMSSYGYCIRDKNGDLLYAEAHNIGETTN 720
Score = 42.4 bits (98), Expect(2) = 5e-12
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 551 WCDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIVGYIEEIKQLEGGKQCTHSHMLRE 381
+C + K+ ++TDSL +Q ++ WK PW +V +EEI ++ H+ RE
Sbjct: 734 FCYENGLRKVRLETDSLALQNMITRSWKIPWELVEKLEEIHEIMQQIDVQVCHVYRE 790
>ref|XP_006343440.1| PREDICTED: uncharacterized protein LOC102595406 [Solanum tuberosum]
Length = 866
Score = 54.3 bits (129), Expect(2) = 2e-11
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Frame = -1
Query: 757 RAQVKVTKVT*HPPPRGWIMCNTDG----NPGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
+ ++ K+ PP CNTDG NPGK +Y +C+RD+EG++I+AQA+E+ TN
Sbjct: 724 KPRIYYKKIIWMPPNSNTRKCNTDGASKGNPGKSSYAYCLRDQEGNLIYAQAEEIPETTN 783
Score = 41.2 bits (95), Expect(2) = 2e-11
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -3
Query: 548 CDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIVGYIEEIKQLEGGKQCTHSHMLREG 378
C + ++ I+TDSLL++ IL W+ PW+I +E+ L H+ REG
Sbjct: 798 CTTRGFSRVTIETDSLLLKNILQGNWEIPWNIRIIVEDTLTLMQYSTVNIEHIYREG 854
>ref|XP_006358721.1| PREDICTED: uncharacterized protein LOC102596481 [Solanum tuberosum]
Length = 1135
Score = 48.5 bits (114), Expect(2) = 2e-09
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = -1
Query: 742 VTKVT*HPPPRGWIMCNTDG----NPGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
V +V P R + CNTDG N G + F VRDEEGD+I+A+AK +G TN
Sbjct: 1031 VMQVQEEKPGRNKVKCNTDGAARGNSGASSTSFVVRDEEGDLIYARAKGIGIATN 1085
Score = 40.4 bits (93), Expect(2) = 2e-09
Identities = 13/34 (38%), Positives = 26/34 (76%)
Frame = -3
Query: 551 WCDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIV 450
+C K + + II+TDSL+++++++ +WK PW +V
Sbjct: 1099 YCQEKDLKEPIIETDSLVLKKMVDNQWKIPWELV 1132
>ref|XP_006338863.1| PREDICTED: uncharacterized protein LOC102579795 [Solanum tuberosum]
Length = 778
Score = 45.8 bits (107), Expect(2) = 1e-08
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = -3
Query: 551 WCDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIVGYIEEIKQLEGGKQCTHSHMLREG-- 378
+C + +I++TDSL++ +IL+ W++PW I I++I+ L Q SH+ REG
Sbjct: 194 FCMSHNLLPVILETDSLIVSKILDGIWETPWSISLLIKKIQWLRRDGQVEVSHVFREGNK 253
Query: 377 -INY 369
+NY
Sbjct: 254 VVNY 257
Score = 40.0 bits (92), Expect(2) = 1e-08
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = -1
Query: 721 PPPRGWIMCNTD----GNPGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
PP G CNTD GNP A FC+R+ G+ I+ ++ELG T+
Sbjct: 133 PPNMGVYKCNTDCASKGNPRPSAGGFCIRNWNGEFIYTTSQELGFKTS 180
>ref|XP_004233852.1| PREDICTED: uncharacterized protein LOC101253557 [Solanum
lycopersicum]
Length = 13995
Score = 50.8 bits (120), Expect(2) = 5e-08
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Frame = -1
Query: 751 QVKVTKVT*HPPPRGWIMCNTDGNPGKGAYDFCVRDEEGDIIHAQAKELGHI--TNT 587
+ KVTKV P G I TD P + ++ FCVRDE+GDI+ AQA+E+G + TNT
Sbjct: 3165 KAKVTKVIWKAPDTGQIKIKTD--PRRSSWVFCVRDEQGDILQAQAQEIGELACTNT 3219
Score = 33.1 bits (74), Expect(2) = 5e-08
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = -3
Query: 536 QMDKIIIQTDSLLMQRILNEEWK 468
QMD+++I+TDSLL I+++ WK
Sbjct: 3237 QMDRVVIKTDSLLTNNIVDKSWK 3259
>ref|XP_006354689.1| PREDICTED: uncharacterized protein LOC102605437 [Solanum tuberosum]
Length = 333
Score = 43.9 bits (102), Expect(2) = 2e-07
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -1
Query: 718 PPRGWIMCNTDG----NPGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
PP G + CNTD NP +Y FC+R+ GD+++ Q KE+ TN
Sbjct: 162 PPEGILTCNTDVASRCNPEISSYGFCLRNSVGDLVYVQGKEIQEGTN 208
Score = 37.7 bits (86), Expect(2) = 2e-07
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = -3
Query: 548 CDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIVGYIEEIKQLEGGKQCTHSHMLREG 378
C K + K ++TDS ++ +IL W+ PW IV IE+I L H+ REG
Sbjct: 223 CVTKGVMKACLETDSQVLIKILTRIWEVPWSIVVIIEDIWGLFQECHVQIQHVYREG 279
>ref|XP_006358679.1| PREDICTED: uncharacterized protein LOC102578253 [Solanum tuberosum]
Length = 277
Score = 50.1 bits (118), Expect(2) = 2e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = -3
Query: 551 WCDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIVGYIEEIKQLEGGKQCTHSHMLRE 381
WC K M+ I +TDSLL+ + + EWKSPW I ++EI+++ + + H +E
Sbjct: 204 WCASKGMEMAIGETDSLLLSKTIKREWKSPWKISNQVQEIQKMIEDHKFSIVHCFKE 260
Score = 28.5 bits (62), Expect(2) = 2e-06
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 751 QVKVTKVT*HPPPRGWIMCNTDGN--PGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
Q+ +T PP + N+DG+ G+ +RD+EGD I A + LG+ T+
Sbjct: 135 QMTRISITWIKPPSLRVKLNSDGSFSNGQSGSGGIIRDQEGDFIFAYSIPLGNGTS 190
>ref|XP_006344597.1| PREDICTED: uncharacterized protein LOC102605041 [Solanum tuberosum]
Length = 220
Score = 48.1 bits (113), Expect(2) = 3e-06
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -1
Query: 721 PPPRGWIMCNTDG----NPGKGAYDFCVRDEEGDIIHAQAKELGHITN 590
PPP GW CNTDG N G FCVRD GD++ A+ + TN
Sbjct: 80 PPPLGWWKCNTDGASRGNSGPSTIAFCVRDSSGDLVGAKGLRIQDTTN 127
Score = 30.0 bits (66), Expect(2) = 3e-06
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 551 WCDHKQMDKIIIQTDSLLMQRILNEEWKSPWHIVGYIEEIKQL 423
+C +I+++DSL + +LN +W PW + + I ++
Sbjct: 141 YCLENGFSLVIMESDSLSLINMLNGDWIVPWSVTLEVNSINRM 183