BLASTX nr result
ID: Atropa21_contig00034113
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00034113
(543 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 59 3e-23
ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665... 53 6e-23
ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660... 49 3e-20
ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661... 54 1e-19
ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663... 51 3e-19
ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A... 54 1e-18
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 49 1e-17
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 52 1e-17
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 44 2e-16
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 45 4e-16
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 45 7e-16
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 44 9e-16
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 49 1e-15
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 53 2e-15
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 44 3e-15
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 46 6e-15
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 59 7e-15
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 47 1e-14
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 45 3e-14
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 46 3e-14
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 58.5 bits (140), Expect(3) = 3e-23
Identities = 26/75 (34%), Positives = 44/75 (58%)
Frame = -2
Query: 527 KSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYL 348
+ +++ +LCFA+D+L F +G+ SV +ML TF S GL N K NIY +++
Sbjct: 507 EKMKITNLCFADDLLLFSRGDIGSVQIMLDKFNTFLRSMGLHVNPSKCNIYCGSVDINVK 566
Query: 347 EDLCAATGYQQVALP 303
E L +G+++ +P
Sbjct: 567 EQLLLISGFKEGKMP 581
Score = 54.3 bits (129), Expect(3) = 3e-23
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = -1
Query: 312 RFAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
+ FRYLG+P+SS+++N Y++L+DK+ R+ WS+ +SY RVQ I
Sbjct: 579 KMPFRYLGIPLSSKKLNIKHYQVLIDKIVGRITHWSAGLLSYAGRVQLI 627
Score = 41.2 bits (95), Expect(3) = 3e-23
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVC 11
+ SV+ ++W LPK V+ + A+CR+FL G ++ P+AW+ VC
Sbjct: 626 LIQSVIFATINFWMQCLPLPKFVIMRINAICRSFLWIGNSNISRKSPIAWEKVC 679
>ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665746 [Glycine max]
Length = 506
Score = 53.1 bits (126), Expect(3) = 6e-23
Identities = 18/51 (35%), Positives = 37/51 (72%)
Frame = -1
Query: 303 FRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFITQYSY 151
F+YLGVP++S++++T+ Y L+DK+ +++ W++R +SY R+Q + +
Sbjct: 140 FKYLGVPVTSKKLSTIHYSPLIDKIVGKIKHWTARLLSYAGRLQLVNSVMF 190
Score = 50.8 bits (120), Expect(3) = 6e-23
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = -2
Query: 521 LRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYLED 342
L++ +LCFA+D+L F +G+ SV +M+ ++FS ++GL N K ++ A I+ +
Sbjct: 67 LKITNLCFADDLLLFSRGDKISVGMMMRAYESFSKATGLLVNPQKCSLLCAGIDAVTKRE 126
Query: 341 LCAATGYQQVALP 303
+ +G+Q+ LP
Sbjct: 127 ILEVSGFQEGQLP 139
Score = 49.3 bits (116), Expect(3) = 6e-23
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
+ NSV+ + +YW F PK V++K A+CR FL G ++ PVAW +C R
Sbjct: 184 LVNSVMFALTNYWLNCFPFPKSVLQKIEAICRIFLWTGGFEGSRKSPVAWKQICSPR 240
>ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660482 [Glycine max]
Length = 303
Score = 48.5 bits (114), Expect(3) = 3e-20
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = -2
Query: 542 FDTNRKSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANI 363
F N ++L+HL F +D++ +G+ S+ M + LQ F GL ++ KS+IYS++I
Sbjct: 12 FHPNCAGIQLSHLAFVDDIMLLSRGDIPSMSTMFAKLQHFCRVLGLSISSDKSSIYSSSI 71
Query: 362 EKQYLEDLCAATGYQQVALP 303
L + TG+ P
Sbjct: 72 RTHELSHIQQLTGFSLGGFP 91
Score = 48.5 bits (114), Expect(3) = 3e-20
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = -1
Query: 321 SASRFAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
S F FRYLGVP+ S R+N Y LL K+ ++ WS +++SY +++ I
Sbjct: 86 SLGGFPFRYLGVPLLSSRLNVCHYAPLLSKITGLIQGWSRKSLSYAGKLELI 137
Score = 47.0 bits (110), Expect(3) = 3e-20
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVC 11
+ +V+ + ++W IF LP+ V+ + A CRNFL ++ K P VAW +VC
Sbjct: 136 LIRAVIQGIVNFWIGIFPLPQSVLDRINASCRNFLWGKADIGKKKPLVAWSVVC 189
>ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661523 [Glycine max]
Length = 947
Score = 53.9 bits (128), Expect(3) = 1e-19
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = -2
Query: 527 KSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYL 348
+ L + HL FA+D+L FC+G+ SV +ML + FSA++GL N K IY ++
Sbjct: 507 EKLGITHLTFADDVLLFCRGDVMSVEMMLHVINKFSATTGLVVNPNKCRIYFGGVDGTTK 566
Query: 347 EDLCAATGYQQVALPL 300
+ + Y++ LP+
Sbjct: 567 NKIQQISSYEEGQLPV 582
Score = 48.5 bits (114), Expect(3) = 1e-19
Identities = 20/45 (44%), Positives = 33/45 (73%)
Frame = -1
Query: 300 RYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
RYLGVP++S+++N Y L+DK+ R+R W+S+ ++ T RVQ +
Sbjct: 583 RYLGVPLTSKKLNIKYYLPLIDKITTRIRHWTSKLLNMTGRVQMV 627
Score = 39.3 bits (90), Expect(3) = 1e-19
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 166 NSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
N + + +W +P V+KK ++CR+F+ + P+AW+ VCR +
Sbjct: 628 NCTITAIVQFWMQCLPIPMSVIKKIDSMCRSFVWSRSTEITRKSPIAWNSVCRPK 682
>ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663533 [Glycine max]
Length = 514
Score = 50.8 bits (120), Expect(3) = 3e-19
Identities = 21/74 (28%), Positives = 42/74 (56%)
Frame = -2
Query: 521 LRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYLED 342
L + HL FA+D+ C+G+ +S+ +++ FS S+GLQ N K ++ + ++
Sbjct: 170 LGITHLSFADDVFLLCRGDKKSIKMIIKAFSFFSKSTGLQINPAKCKVFCGGLNCDSIQV 229
Query: 341 LCAATGYQQVALPL 300
+ TG+++ LP+
Sbjct: 230 ITKITGFEEGTLPV 243
Score = 45.1 bits (105), Expect(3) = 3e-19
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = -1
Query: 300 RYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
RYLGVP+S +++N Y L++K+ ++R WSS+ +S R+Q +
Sbjct: 244 RYLGVPLSCKKLNVHHYLPLVEKIVGKIRHWSSKLLSIAGRIQLV 288
Score = 44.7 bits (104), Expect(3) = 3e-19
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCR 8
+ S++ + YW ++F +PK V++K ++CR+F+ G + VAW VC+
Sbjct: 287 LVRSIITAIAQYWMSVFPMPKKVIQKIDSICRSFIWSGSAEVKRKSLVAWKQVCK 341
>ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 239
Score = 54.3 bits (129), Expect(3) = 1e-18
Identities = 30/80 (37%), Positives = 41/80 (51%)
Frame = -2
Query: 542 FDTNRKSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANI 363
F N ++L HL FA+D++ +G+ SV M + LQ F SGL N+ KS IYSA I
Sbjct: 12 FHPNCAGIQLFHLAFADDIMFLSRGDIPSVSTMFAKLQHFCRVSGLSINSDKSAIYSAGI 71
Query: 362 EKQYLEDLCAATGYQQVALP 303
L + TG+ P
Sbjct: 72 RPHELSHIQQLTGFNLGGFP 91
Score = 48.1 bits (113), Expect(3) = 1e-18
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = -1
Query: 309 FAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
F FRYLGVP+ S R+N Y LL K+ ++ WS +++SY +++ I
Sbjct: 90 FPFRYLGVPLLSSRLNVCHYAPLLSKITGLIQGWSRKSLSYAGKLELI 137
Score = 35.8 bits (81), Expect(3) = 1e-18
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVC 11
+ +V+ + ++W IF L + V+ + A C NFL ++ +AW +VC
Sbjct: 136 LIRAVIQGIVNFWMKIFPLSQSVLDRINASCCNFLWGKADIGKNKSLIAWSVVC 189
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 48.9 bits (115), Expect(3) = 1e-17
Identities = 28/80 (35%), Positives = 41/80 (51%)
Frame = -2
Query: 542 FDTNRKSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANI 363
F + L + HL FA+D+L FC+ + S+ M Q FS +SGL A+ KSNIY +
Sbjct: 674 FHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGV 733
Query: 362 EKQYLEDLCAATGYQQVALP 303
+ + +L Q LP
Sbjct: 734 DDETARELADYVHMQLGELP 753
Score = 45.1 bits (105), Expect(3) = 1e-17
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
+ S+L +Q+YWA IF L K V++ +CR FL G+ K PVAW + R +
Sbjct: 798 LIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPK 854
Score = 41.2 bits (95), Expect(3) = 1e-17
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = -1
Query: 303 FRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
FRYLGVP++S+++ + L++ + R + W ++ +SY R+Q I
Sbjct: 754 FRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLI 799
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 51.6 bits (122), Expect(3) = 1e-17
Identities = 24/74 (32%), Positives = 39/74 (52%)
Frame = -2
Query: 521 LRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYLED 342
L L+HLCFA+D+L FC G+ SV + F + S L+AN +S I+ A ++ +
Sbjct: 518 LNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDS 577
Query: 341 LCAATGYQQVALPL 300
+ T + P+
Sbjct: 578 VLQVTNFSLGTCPV 591
Score = 43.1 bits (100), Expect(3) = 1e-17
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = -1
Query: 300 RYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
RYLG+P+ + ++ D LLD++E R++ W ++ +S+ R+Q I
Sbjct: 592 RYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLI 636
Score = 40.0 bits (92), Expect(3) = 1e-17
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVC 11
+ SVL +Q YWA+ ILPK V+K R FL G A VAW +C
Sbjct: 635 LIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEIC 688
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 44.3 bits (103), Expect(3) = 2e-16
Identities = 15/58 (25%), Positives = 37/58 (63%)
Frame = -1
Query: 339 MCSYWISASRFAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
+ S+ + + RYLG+P+ ++++ T DY L++ ++ ++ W++R++SY R+ +
Sbjct: 1054 LSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALL 1111
Score = 43.5 bits (101), Expect(3) = 2e-16
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = -2
Query: 527 KSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANI 363
+ + L HLCFA+D++ F G+ S+ +++ + F+ SGLQ + KS IY A +
Sbjct: 991 EKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGV 1045
Score = 43.1 bits (100), Expect(3) = 2e-16
Identities = 16/58 (27%), Positives = 34/58 (58%)
Frame = -3
Query: 175 SIYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
++ NSV++ + ++W + + LP G +++ LC FL G ++ K +AW +C+ +
Sbjct: 1109 ALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPK 1166
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 45.1 bits (105), Expect(3) = 4e-16
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = -3
Query: 175 SIYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
++ +SVL + ++W + F LP+ +++ LC FL G E+S +AW+ VCR +
Sbjct: 330 NLVSSVLWSICNFWLSAFRLPRECVREIDKLCSAFLWSGPELSTNKAKIAWETVCRPK 387
Score = 44.7 bits (104), Expect(3) = 4e-16
Identities = 18/66 (27%), Positives = 38/66 (57%)
Frame = -1
Query: 360 EAVLGRFMCSYWISASRFAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTS 181
++V F + + R RYL +P+ ++R + DY LL++++ R+ W++R +SY
Sbjct: 268 KSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGTWTARFLSYAG 327
Query: 180 RVQFIT 163
R+ ++
Sbjct: 328 RLNLVS 333
Score = 40.0 bits (92), Expect(3) = 4e-16
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = -2
Query: 527 KSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYL 348
K+L L HL FA+D++ G +S+ ++ +F+ SGL+ + K+ IY A I K
Sbjct: 212 KNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTIYFAGISKSVC 271
Query: 347 ED 342
++
Sbjct: 272 KE 273
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 45.4 bits (106), Expect(3) = 7e-16
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = -2
Query: 542 FDTNRKSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANI 363
F K+L L HLCFA+D++ G +SV ++ + F+ SGLQ N K+ +Y+A +
Sbjct: 94 FHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLQINMEKTTLYTAGV 153
Score = 43.5 bits (101), Expect(3) = 7e-16
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = -3
Query: 175 SIYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
++ +SVL ++W + F LP +K+ ++C FL G E+ + V+WD +C+ +
Sbjct: 217 NLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPK 274
Score = 40.0 bits (92), Expect(3) = 7e-16
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -1
Query: 330 YWISASRFAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFIT 163
Y + RYLG+P+ ++R+ D L +++ R+ W+SR +S+ R+ I+
Sbjct: 165 YPFGLGQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLIS 220
>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1115
Score = 44.3 bits (103), Expect(3) = 9e-16
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = -3
Query: 175 SIYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
++ +SVL ++W + F LP +K+ ++C FL G E++ + V+WD +C+ +
Sbjct: 729 NLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELNRRKAKVSWDDICKPK 786
Score = 43.9 bits (102), Expect(3) = 9e-16
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = -2
Query: 542 FDTNRKSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANI 363
F K+L L HLCFA+D++ G +SV ++ + F+ SGL+ N K+ +Y+A +
Sbjct: 606 FHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVMNLFAKRSGLKINMEKTTLYTAGV 665
Score = 40.4 bits (93), Expect(3) = 9e-16
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -1
Query: 330 YWISASRFAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFIT 163
Y ++ RYLG+P+ ++R+ D L +++ R+ W+SR +S+ R+ I+
Sbjct: 677 YPFGLAQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLIS 732
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 49.3 bits (116), Expect(3) = 1e-15
Identities = 19/55 (34%), Positives = 34/55 (61%)
Frame = -1
Query: 330 YWISASRFAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
Y + RYLG+P+ ++R+ T DY L+D++ R+ +W+SR +S+ R+ I
Sbjct: 481 YSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLI 535
Score = 39.7 bits (91), Expect(3) = 1e-15
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -2
Query: 527 KSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANI 363
K+L L HLCFA+D++ G +SV ++ L F+A GL+ K+ +Y A +
Sbjct: 415 KTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGV 469
Score = 39.3 bits (90), Expect(3) = 1e-15
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = -3
Query: 175 SIYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
S+ NSVL + ++W F LP+ + + + L G E++ K V+WD +C+ +
Sbjct: 533 SLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPK 590
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 52.8 bits (125), Expect(3) = 2e-15
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = -1
Query: 309 FAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFITQYSY 151
F FRYLG+P+ R++ DY L+DK+ AR W+++ +S+ R+Q I+ Y
Sbjct: 759 FPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIY 811
Score = 43.1 bits (100), Expect(3) = 2e-15
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = -2
Query: 521 LRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYLED 342
+R++ L FA+D++ F G S+ + S L++F SGL+ N KS +Y+A +E ED
Sbjct: 689 VRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKED 748
Query: 341 LCA 333
A
Sbjct: 749 TLA 751
Score = 31.6 bits (70), Expect(3) = 2e-15
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAP-PVAWDLVC 11
+ +SV+ ++W + FILPK +K +C FL G +++ + V+W C
Sbjct: 805 LISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFL-WGNDITRRGDIKVSWQNSC 858
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 43.9 bits (102), Expect(3) = 3e-15
Identities = 17/45 (37%), Positives = 32/45 (71%)
Frame = -1
Query: 300 RYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
+YLG+P+ ++R+ DY L++K+ AR+ W++R +S+ R+Q I
Sbjct: 917 KYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLI 961
Score = 42.7 bits (99), Expect(3) = 3e-15
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = -2
Query: 527 KSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYL 348
+++ L HLCFA+D++ F G +S+ L+ + F+A S L+ + KS I+ A I
Sbjct: 841 RNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAK 900
Query: 347 EDLCAATGYQQVALPL 300
+ ++ LP+
Sbjct: 901 TSILQQFPFELGTLPV 916
Score = 40.0 bits (92), Expect(3) = 3e-15
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCR 8
+ SVL + ++W ++F LPK +++ + FL G +++ K +AW VC+
Sbjct: 960 LIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCK 1014
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 46.2 bits (108), Expect(3) = 6e-15
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = -3
Query: 175 SIYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
++ SVL + ++W F LP+ +++ LC +FL G E+S+ ++WD+VC+ +
Sbjct: 459 NLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPK 516
Score = 42.4 bits (98), Expect(3) = 6e-15
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = -1
Query: 300 RYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
RYLG+P+ ++R+ + DY LL++++ R+ W+ R S+ R I
Sbjct: 417 RYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLI 461
Score = 37.4 bits (85), Expect(3) = 6e-15
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = -2
Query: 542 FDTNRKSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANI 363
F + L L HL FA+D++ G +S+ +L F SGL+ + KS +Y A +
Sbjct: 336 FHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGV 395
Query: 362 EKQYLEDLCAATGYQQVALPL 300
+++ A + LP+
Sbjct: 396 SPIIKQEIAAKFLFDVGQLPV 416
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 58.5 bits (140), Expect(2) = 7e-15
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = -2
Query: 521 LRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYLED 342
L + HLCFA+D+L F +G+ S+ + FS +SGLQAN KS+IY ++ + +
Sbjct: 489 LDVTHLCFADDLLLFSRGDLNSIKALQKCFTEFSQASGLQANLNKSSIYCGGVQMEVRQQ 548
Query: 341 LCAATGYQQVALP---LGTWVSLSPLGE*IQW 255
+ GY LP LG +S L IQW
Sbjct: 549 IIQQLGYTIEELPFKYLGVPLSSKKLNT-IQW 579
Score = 47.4 bits (111), Expect(2) = 7e-15
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = -3
Query: 181 QSSIYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVC 11
++ + +VL VQ+ WA +FI+P ++K LCR++L G K +AWD VC
Sbjct: 603 RAQLVKTVLFGVQALWAQLFIIPAKIIKLIEGLCRSYLWSGVGYVTKKALIAWDKVC 659
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 46.6 bits (109), Expect(3) = 1e-14
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = -2
Query: 527 KSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYL 348
+++ L HLCFA+D++ F G+ S+ +L+ + F+A SGL + KS ++ A+I +
Sbjct: 949 RNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETC 1008
Query: 347 EDLCAATGYQQVALPL 300
+ A + +LP+
Sbjct: 1009 ASILARFPFDSGSLPV 1024
Score = 43.1 bits (100), Expect(3) = 1e-14
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = -1
Query: 300 RYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFI 166
RYLG+P+ ++R+ D LL+K+ +R+ W +R +SY R+Q +
Sbjct: 1025 RYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLL 1069
Score = 35.0 bits (79), Expect(3) = 1e-14
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -3
Query: 172 IYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
+ NSV+ + +W + F LP+ +++ + FL G +++ VAW VC+ +
Sbjct: 1068 LLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPK 1124
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 45.4 bits (106), Expect(3) = 3e-14
Identities = 19/53 (35%), Positives = 35/53 (66%)
Frame = -1
Query: 321 SASRFAFRYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFIT 163
S+ + RYLG+P+ ++R++T D LL+++ R+ W+SR +SY R+ I+
Sbjct: 763 SSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLIS 815
Score = 40.8 bits (94), Expect(3) = 3e-14
Identities = 15/58 (25%), Positives = 34/58 (58%)
Frame = -3
Query: 175 SIYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
++ +SVL + ++W F LP+ +++ +C FL G E+++ ++W +VC+ +
Sbjct: 812 NLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPK 869
Score = 37.0 bits (84), Expect(3) = 3e-14
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 527 KSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYL 348
K++ L HL FA+D++ G +S+ ++ F+ SGL+ + KS +Y A +
Sbjct: 694 KTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATAR 753
Query: 347 EDLCAATGYQQVALPL 300
++ + LP+
Sbjct: 754 NEVADRFPFSSGQLPV 769
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 46.2 bits (108), Expect(3) = 3e-14
Identities = 18/46 (39%), Positives = 33/46 (71%)
Frame = -1
Query: 300 RYLGVPISSRRINTVDYEMLLDKMEARVRVWSSRNISYTSRVQFIT 163
RYLG+P+ ++R+++VDY L++++ R+ WSSR +S+ R I+
Sbjct: 323 RYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLIS 368
Score = 39.7 bits (91), Expect(3) = 3e-14
Identities = 14/58 (24%), Positives = 35/58 (60%)
Frame = -3
Query: 175 SIYNSVLLHVQSYWATIFILPKGVMKKFIALCRNFL*DGQEVSNKAPPVAWDLVCRSR 2
++ +S++ ++W + F LP+ +++ LC +FL G +++K ++W+ VC+ +
Sbjct: 365 NLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPK 422
Score = 37.4 bits (85), Expect(3) = 3e-14
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = -2
Query: 527 KSLRLNHLCFANDMLHFCKGNYQSVMLMLSDLQTFSASSGLQANAGKSNIYSANIEKQYL 348
K + L HL FA+D++ G +S+ ++ FS SGL+ + KS I+SA +
Sbjct: 247 KRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSR 306
Query: 347 EDLCAATGYQQVALPL 300
L ++ LP+
Sbjct: 307 AQLHTHFPFEVGELPI 322