BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00030704
         (813 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   400   e-109
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   395   e-108
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   395   e-108
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   394   e-107
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   394   e-107
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   392   e-106
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   391   e-106
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   390   e-106
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 365   1e-98
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   309   7e-82
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   257   4e-66
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   242   1e-61
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             217   4e-54
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   217   4e-54
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   213   6e-53
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   208   2e-51
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   206   8e-51
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 206   1e-50
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 205   2e-50
ref|YP_002341559.1| replication-associated protein [Schlumberger...   194   2e-47

>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  400 bits (1027), Expect = e-109
 Identities = 196/270 (72%), Positives = 219/270 (81%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSD 632
            L A+H LG++R GGPLLP++T +    E           ++AS A +     D  P   +
Sbjct: 481  LEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQN 540

Query: 631  PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 452
            P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+ATLP HW    L ++L
Sbjct: 541  PETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERIL 600

Query: 451  TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAI 272
            +TLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLTEN    LAI
Sbjct: 601  STLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAI 660

Query: 271  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 92
            SVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV
Sbjct: 661  SVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 720

Query: 91   CSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
             S SPVVIFDDYGKLPQGY+EAFA+THA+L
Sbjct: 721  SSHSPVVIFDDYGKLPQGYLEAFALTHANL 750


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  395 bits (1016), Expect = e-108
 Identities = 200/270 (74%), Positives = 217/270 (80%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSD 632
            L ALHELGN R GGPLLPK  P +  R                        +D +P   D
Sbjct: 478  LWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQD 535

Query: 631  PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 452
            P+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L
Sbjct: 536  PSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERIL 595

Query: 451  TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAI 272
            +TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAI
Sbjct: 596  STLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAI 655

Query: 271  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 92
            SVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV
Sbjct: 656  SVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 715

Query: 91   CSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            CS+ PVVIFDDYGKLPQGY+EAFAMTHASL
Sbjct: 716  CSRCPVVIFDDYGKLPQGYLEAFAMTHASL 745


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  395 bits (1016), Expect = e-108
 Identities = 200/270 (74%), Positives = 217/270 (80%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSD 632
            L ALHELGN R GGPLLPK  P +  R                        +D +P   D
Sbjct: 478  LWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQD 535

Query: 631  PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 452
            P+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L
Sbjct: 536  PSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERIL 595

Query: 451  TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAI 272
            +TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAI
Sbjct: 596  STLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAI 655

Query: 271  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 92
            SVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV
Sbjct: 656  SVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 715

Query: 91   CSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            CS+ PVVIFDDYGKLPQGY+EAFAMTHASL
Sbjct: 716  CSRCPVVIFDDYGKLPQGYLEAFAMTHASL 745


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  394 bits (1012), Expect = e-107
 Identities = 199/270 (73%), Positives = 216/270 (80%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSD 632
            L ALHELGN R GGPLLPK  P +  R                        +D +P   D
Sbjct: 478  LWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQD 535

Query: 631  PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 452
            P+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L
Sbjct: 536  PSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERIL 595

Query: 451  TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAI 272
            +TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAI
Sbjct: 596  STLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAI 655

Query: 271  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 92
            SVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV
Sbjct: 656  SVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 715

Query: 91   CSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            CS+ PVVIFDDYGKLPQGY+EAFAMTHASL
Sbjct: 716  CSRCPVVIFDDYGKLPQGYLEAFAMTHASL 745


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  394 bits (1012), Expect = e-107
 Identities = 199/270 (73%), Positives = 216/270 (80%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSD 632
            L ALHELGN R GGPLLPK  P +  R                        +D +P   D
Sbjct: 478  LWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQD 535

Query: 631  PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 452
            P+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L
Sbjct: 536  PSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERIL 595

Query: 451  TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAI 272
            +TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAI
Sbjct: 596  STLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAI 655

Query: 271  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 92
            SVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV
Sbjct: 656  SVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 715

Query: 91   CSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            CS+ PVVIFDDYGKLPQGY+EAFAMTHASL
Sbjct: 716  CSRCPVVIFDDYGKLPQGYLEAFAMTHASL 745


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  392 bits (1006), Expect = e-106
 Identities = 198/270 (73%), Positives = 215/270 (79%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSD 632
            L ALHELGN R G PLLPK  P +  R                        +D +P   D
Sbjct: 478  LWALHELGNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQD 535

Query: 631  PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 452
            P+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P + ++L
Sbjct: 536  PSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERIL 595

Query: 451  TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAI 272
            +TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAI
Sbjct: 596  STLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAI 655

Query: 271  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 92
            SVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV
Sbjct: 656  SVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 715

Query: 91   CSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            CS+ PVVIFDDYGKLPQGY+EAFAMTHASL
Sbjct: 716  CSRCPVVIFDDYGKLPQGYLEAFAMTHASL 745


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  391 bits (1005), Expect = e-106
 Identities = 198/270 (73%), Positives = 216/270 (80%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSD 632
            L ALHELGN R GGPLLPK  P +  R                        +D +P   D
Sbjct: 478  LWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQD 535

Query: 631  PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 452
            P+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P ++++L
Sbjct: 536  PSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARIL 595

Query: 451  TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAI 272
            +TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLTEN   NLAI
Sbjct: 596  STLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAI 655

Query: 271  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 92
            SVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFV
Sbjct: 656  SVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFV 715

Query: 91   CSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            CS+ PVVIFDDYGKLPQGY+EAFAMTHASL
Sbjct: 716  CSRCPVVIFDDYGKLPQGYLEAFAMTHASL 745


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  390 bits (1001), Expect = e-106
 Identities = 197/274 (71%), Positives = 218/274 (79%), Gaps = 4/274 (1%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPK----ITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVP 644
            L ALHELGNTR GGPLLPK    +T  E   +          P + +        T  +P
Sbjct: 478  LWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPRKTT------QTLDLP 531

Query: 643  VNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGL 464
               DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A    HW  P +
Sbjct: 532  HPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDM 591

Query: 463  SKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTA 284
             ++++TLRS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML EN   
Sbjct: 592  ERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQT 651

Query: 283  NLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFE 104
            NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFE
Sbjct: 652  NLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFE 711

Query: 103  RAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            RAFVCS+ PVVIFDDYGKLPQGY+EAFA+THASL
Sbjct: 712  RAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASL 745


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  365 bits (936), Expect = 1e-98
 Identities = 186/270 (68%), Positives = 206/270 (76%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSD 632
            L ALHELGN+R GGP+LPK +                  T  S+ L +  H    P    
Sbjct: 483  LSALHELGNSRCGGPMLPKRSSNH---------------THTSSDLLRRRH----PRQQR 523

Query: 631  PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 452
                P  +   K   +GFEALEIQTDPSTG+ IMPITD R+LP+A +P HW+ P   K++
Sbjct: 524  STNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKII 583

Query: 451  TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAI 272
             TLR+LNRFPT W PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N   + AI
Sbjct: 584  ATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAI 643

Query: 271  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 92
            SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV
Sbjct: 644  SVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 703

Query: 91   CSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
             S+ PVVIFDDYGKLPQGYIEAFAMTHA+L
Sbjct: 704  SSRGPVVIFDDYGKLPQGYIEAFAMTHANL 733


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  309 bits (792), Expect = 7e-82
 Identities = 165/280 (58%), Positives = 192/280 (68%), Gaps = 10/280 (3%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNS- 635
            L ALH LG+ R  G  LP  +P +   E           T ++A   +   T  V V++ 
Sbjct: 453  LEALHVLGSLRTDGESLP--SPPKAPLETGPHPTP----TISAAGPTKTVPTPNVEVSAN 506

Query: 634  --------DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHW 479
                    DP TLPW AWLP L ALGFEA EIQTDP     IMPITD++ LP  T  E+ 
Sbjct: 507  PLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYD 566

Query: 478  NEPG-LSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTML 302
            +      KV+ TL+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT L
Sbjct: 567  STSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRL 626

Query: 301  TENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPE 122
            TE     L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KLPHNPPE
Sbjct: 627  TETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPE 686

Query: 121  QFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            QFRTFERAFV S +PVVIFDDYGKLPQG++EAFA+    L
Sbjct: 687  QFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGL 726


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  257 bits (656), Expect = 4e-66
 Identities = 129/260 (49%), Positives = 172/260 (66%), Gaps = 4/260 (1%)
 Frame = -3

Query: 769  PLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPV----NSDPATLPWVAWL 602
            P LP ++PE + R               +      ++T+ V      N+  A LPW  W+
Sbjct: 566  PTLP-LSPELEKRHEALKSKAESSEASKTEPRKDENYTEMVNKTLIENAKEAGLPWAVWM 624

Query: 601  PKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFP 422
            PKLNALGFEA E Q  P T  +IMPITD+    K  +P H       ++L  L++L+R P
Sbjct: 625  PKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLLKALSRMP 680

Query: 421  TSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSG 242
            T W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  ++    + +SVIHGAGGSG
Sbjct: 681  TLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVIHGAGGSG 740

Query: 241  KSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFD 62
            KS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ + +P +I D
Sbjct: 741  KSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTNAPSIIMD 800

Query: 61   DYGKLPQGYIEAFAMTHASL 2
            DYGKLPQGY+EAFA+TH ++
Sbjct: 801  DYGKLPQGYVEAFAVTHPNV 820


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score =  242 bits (618), Expect = 1e-61
 Identities = 122/194 (62%), Positives = 139/194 (71%)
 Frame = -3

Query: 811  LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSD 632
            L ALH+LGN R GGPLLP+        E               +  N       +P   D
Sbjct: 478  LWALHKLGNARCGGPLLPQRPDTSTVVEPCPDLPPETHAAPEPSQRNT--QAPNLPSPQD 535

Query: 631  PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 452
            P TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A  P HW  P + +++
Sbjct: 536  PTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQII 595

Query: 451  TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAI 272
            +TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLTE+   NLAI
Sbjct: 596  STLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAI 655

Query: 271  SVIHGAGGSGKSQA 230
            SVIHGAGGSGKSQA
Sbjct: 656  SVIHGAGGSGKSQA 669


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  217 bits (552), Expect = 4e-54
 Identities = 112/209 (53%), Positives = 139/209 (66%), Gaps = 1/209 (0%)
 Frame = -3

Query: 646  PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 470
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543  PVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 469  GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 290
                V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  E +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 289  TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 110
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 109  FERAFVCSKSPVVIFDDYGKLPQGYIEAF 23
            +ERAF    SPVV+FDDYGKLP GYIEA+
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAY 745


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  217 bits (552), Expect = 4e-54
 Identities = 112/209 (53%), Positives = 139/209 (66%), Gaps = 1/209 (0%)
 Frame = -3

Query: 646  PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 470
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543  PVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 469  GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 290
                V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  E +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 289  TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 110
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 109  FERAFVCSKSPVVIFDDYGKLPQGYIEAF 23
            +ERAF    SPVV+FDDYGKLP GYIEA+
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAY 745


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  213 bits (542), Expect = 6e-53
 Identities = 112/202 (55%), Positives = 139/202 (68%)
 Frame = -3

Query: 622  LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 443
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 442  RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 263
              L R PT + P+  RARA+TSDVKN R G  L ++ + W      L E     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 262  HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 83
            HGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880

Query: 82   SPVVIFDDYGKLPQGYIEAFAM 17
            +P+VIFDDYGKLP GY+EAF +
Sbjct: 881  TPIVIFDDYGKLPAGYVEAFCL 902


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  208 bits (529), Expect = 2e-51
 Identities = 112/210 (53%), Positives = 138/210 (65%)
 Frame = -3

Query: 634  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 455
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 454  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 275
            L    S  R PT + P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 274  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 95
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 94   VCSKSPVVIFDDYGKLPQGYIEAFAMTHAS 5
            +    P VIFDDYGKLP GYIEAF+   +S
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIEAFSFYMSS 900


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  206 bits (524), Expect = 8e-51
 Identities = 111/210 (52%), Positives = 138/210 (65%)
 Frame = -3

Query: 634  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 455
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753

Query: 454  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 275
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 274  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 95
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 94   VCSKSPVVIFDDYGKLPQGYIEAFAMTHAS 5
            +    P VIFDDYGKLP GYIE+F+   +S
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSS 900


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  206 bits (523), Expect = 1e-50
 Identities = 111/211 (52%), Positives = 138/211 (65%)
 Frame = -3

Query: 634  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 455
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 454  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 275
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 274  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 95
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 94   VCSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            +    P VIFDDYGKLP GYIEAF+   +S+
Sbjct: 871  LAPIKPTVIFDDYGKLPAGYIEAFSCYMSSV 901


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  205 bits (521), Expect = 2e-50
 Identities = 110/210 (52%), Positives = 138/210 (65%)
 Frame = -3

Query: 634  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 455
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE   +P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKV-DPSLLKM 753

Query: 454  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 275
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LDNQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 274  ISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 95
            ISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 94   VCSKSPVVIFDDYGKLPQGYIEAFAMTHAS 5
            +    P VIFDDYGKLP GYIE+F+   +S
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSS 900


>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
            gi|217316801|gb|AAR11537.2| replication-associated
            protein [Schlumbergera virus X]
          Length = 1545

 Score =  194 bits (494), Expect = 2e-47
 Identities = 99/213 (46%), Positives = 135/213 (63%)
 Frame = -3

Query: 640  NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLS 461
            +++ + LPW AWLP LN  GF+  + Q +P+ G +I PI D++ L K       + PG++
Sbjct: 710  HAETSVLPWQAWLPILNVAGFKGTQSQVNPNDGSLISPILDIKKLEKTPA----SHPGIN 765

Query: 460  KVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 281
            +VLT +   +R PT + PD  RA+AF SDVKN R G  L  +++ W E  +  TE     
Sbjct: 766  EVLTCI---HRLPTPFTPDPLRAKAFGSDVKNLRIGALLKHQSKEWLEAFSRKTEMPPRT 822

Query: 280  LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 101
            + +SVIHG GGSGKS ALQ  LR NP+  I V+LPTNELRLDW +KLP   P   +TFE+
Sbjct: 823  IGLSVIHGTGGSGKSHALQDFLRNNPEERITVILPTNELRLDWQRKLPQAHPNSLKTFEK 882

Query: 100  AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASL 2
            + +   S VVI DDY KLP G+IEA+  T++ L
Sbjct: 883  SLLVGASSVVIMDDYTKLPAGFIEAYINTNSGL 915