BLASTX nr result

ID: Atropa21_contig00030668 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00030668
         (488 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004236336.1| PREDICTED: SWI/SNF complex component SNF12 h...    73   3e-14
ref|XP_006351478.1| PREDICTED: SWI/SNF complex component SNF12 h...    69   6e-13

>ref|XP_004236336.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Solanum
           lycopersicum]
          Length = 526

 Score = 73.2 bits (178), Expect(2) = 3e-14
 Identities = 38/64 (59%), Positives = 40/64 (62%)
 Frame = +1

Query: 226 MNNNNPVKNVSLSNSVPIQIPQSMPLNXXXXXXXXXXXXXXXCASHYPGHFQLSVPQRSH 405
           MNNNNPVKNVSL  SVPIQIPQSMP+N                 SH+PGHFQLS   RSH
Sbjct: 1   MNNNNPVKNVSLGTSVPIQIPQSMPINHNQPAVRHFSQSPAQRGSHFPGHFQLS-ESRSH 59

Query: 406 VQFQ 417
             FQ
Sbjct: 60  APFQ 63



 Score = 30.4 bits (67), Expect(2) = 3e-14
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 437 PNTATPNTASGGTRKVL 487
           P  +TPNTASGG RKVL
Sbjct: 86  PAASTPNTASGGARKVL 102


>ref|XP_006351478.1| PREDICTED: SWI/SNF complex component SNF12 homolog [Solanum
           tuberosum]
          Length = 526

 Score = 68.9 bits (167), Expect(2) = 6e-13
 Identities = 36/64 (56%), Positives = 39/64 (60%)
 Frame = +1

Query: 226 MNNNNPVKNVSLSNSVPIQIPQSMPLNXXXXXXXXXXXXXXXCASHYPGHFQLSVPQRSH 405
           MNNNNPVKNVSL  SVP+QIPQSMP+                  SH+PGHFQLS   RSH
Sbjct: 1   MNNNNPVKNVSLGTSVPMQIPQSMPIYHNQPAARHFSQSPAQRGSHFPGHFQLS-ESRSH 59

Query: 406 VQFQ 417
             FQ
Sbjct: 60  APFQ 63



 Score = 30.4 bits (67), Expect(2) = 6e-13
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 437 PNTATPNTASGGTRKVL 487
           P  +TPNTASGG RKVL
Sbjct: 86  PAASTPNTASGGARKVL 102


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