BLASTX nr result
ID: Atropa21_contig00030604
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00030604
(1164 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation spec... 237 8e-60
ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268... 155 4e-35
gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus pe... 154 7e-35
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec... 149 2e-33
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr... 149 2e-33
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr... 148 5e-33
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec... 147 1e-32
ref|XP_002312652.1| RNA recognition motif-containing family prot... 145 2e-32
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu... 144 5e-32
ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Popu... 142 2e-31
ref|XP_002315647.1| RNA recognition motif-containing family prot... 142 2e-31
gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma c... 140 1e-30
gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma c... 132 3e-28
gb|EXB82464.1| Cleavage and polyadenylation specificity factor s... 130 1e-27
ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309... 130 1e-27
gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Th... 127 1e-26
ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [A... 114 6e-23
gb|EOY00739.1| RNA-binding family protein isoform 4 [Theobroma c... 113 2e-22
emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera] 105 3e-20
gb|EOY00741.1| RNA-binding family protein isoform 6 [Theobroma c... 100 1e-18
>ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Solanum tuberosum]
gi|565349616|ref|XP_006341787.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185-like
isoform X2 [Solanum tuberosum]
Length = 648
Score = 237 bits (604), Expect = 8e-60
Identities = 150/313 (47%), Positives = 152/313 (48%), Gaps = 2/313 (0%)
Frame = -3
Query: 1162 PMNEGVGRGGANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAMGSKXXXXXXX 983
PMNEGVGRGG NYTPGDA GAMGSK
Sbjct: 336 PMNEGVGRGGPNYTPGDAGRNFGRGSWGRGGPGMPNRGPGGGPVRGRGAMGSKNMMVNPG 395
Query: 982 XXXXXXXXXGQVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXXXX 803
GQ L GPAF GP AGLMHPQGMM PGFD
Sbjct: 396 AGNGAGGAFGQGLAGPAFGGPPAGLMHPQGMMGPGFDPSFMGRGAGYGGFSGPAFPGMMP 455
Query: 802 XXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXXXX 623
AVNPM LPGVAPHVNPAFF GPHP
Sbjct: 456 PFQAVNPMGLPGVAPHVNPAFFGRGMAANGMGMMSAAGMDGPHPGMWTDTSGGGWGGEEH 515
Query: 622 XXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD--NSXXXXXXXXXXX 449
YGGEDNASEYGYGEVSHDKGARSSAVSREKE GSERD +
Sbjct: 516 GRRTRESSYGGEDNASEYGYGEVSHDKGARSSAVSREKERGSERDWSGNSDKRHRDEREH 575
Query: 448 XXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSRSR 269
R+GYRDY QKE E EYEEDYDRGQ RAAQEEDHRSRSR
Sbjct: 576 DRDRHDKEHRYREERDGYRDYRQKERESEYEEDYDRGQSSSRSRSKSRAAQEEDHRSRSR 635
Query: 268 DTNYGKRRRAPSE 230
DTNYGKRRRAPSE
Sbjct: 636 DTNYGKRRRAPSE 648
>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
uncharacterized protein LOC100268141 isoform 2 [Vitis
vinifera]
Length = 647
Score = 155 bits (391), Expect = 4e-35
Identities = 112/316 (35%), Positives = 130/316 (41%), Gaps = 5/316 (1%)
Frame = -3
Query: 1162 PMNEGVGRGGA-NYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--AMGSKXXXX 992
PMN+GVGRGG N GDA A+G+K
Sbjct: 332 PMNDGVGRGGGMNMQGGDAGRNYGRGGWGRGGQGILNRGPGGGGPMRGRGGAVGAKNMVG 391
Query: 991 XXXXXXXXXXXXGQVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXX 812
GQ L GP F GP GLMHPQGMM GFD
Sbjct: 392 NTAGVGASGGGYGQGLAGPTFGGPAGGLMHPQGMMGSGFDPTYMGRGGAYGGFSGSAFPG 451
Query: 811 XXXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXX 632
AVN M L GVAPHVNPAFF G H
Sbjct: 452 MVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGATGMDGHHAGMWTDTSMGGWGG 511
Query: 631 XXXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD--NSXXXXXXXX 458
YGG+D AS+YGYGEV+H+K RS+ SREKE GSERD +
Sbjct: 512 EEHGRRTRESSYGGDDGASDYGYGEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDE 571
Query: 457 XXXXXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRS 278
++GYRD+ Q+E + E+D+DRGQ RA +EDHRS
Sbjct: 572 REQDWERSDKDHRYREEKDGYRDHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRS 631
Query: 277 RSRDTNYGKRRRAPSE 230
RSRD +YGKRRR PSE
Sbjct: 632 RSRDGDYGKRRRLPSE 647
>gb|EMJ26876.1| hypothetical protein PRUPE_ppa002814mg [Prunus persica]
Length = 630
Score = 154 bits (389), Expect = 7e-35
Identities = 113/322 (35%), Positives = 131/322 (40%), Gaps = 11/322 (3%)
Frame = -3
Query: 1162 PMNEGVGRGGA-NYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---AMGSKXXX 995
PMNEGVGRGG NY GD G AMG+K
Sbjct: 309 PMNEGVGRGGGVNYQTGDTGGRNFGRGGWGRGGQGVANRGPGGGGPMRGRGGAMGAKNMA 368
Query: 994 XXXXXXXXXXXXXG-QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXX 818
Q L GP F GP+ G+M+PQGMM GFD
Sbjct: 369 GNPAGVGTGANGGYGQGLAGPGFGGPVGGMMNPQGMMGAGFDPTYMGRGGGYGGFPGPAF 428
Query: 817 XXXXXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXX 638
AVN M L GVAPHVNPAFF G H
Sbjct: 429 PGMLSSFPAVNTMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMDGHHAGMWNDPSMGGW 488
Query: 637 XXXXXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERDNSXXXXXXXX 458
YGG+D ASEYGYGE +H+KG RS+A SRE+E GSERD S
Sbjct: 489 GGDEHGRRTRESSYGGDDGASEYGYGEANHEKGGRSNAPSRERERGSERDWSGNSERRHR 548
Query: 457 XXXXXXXXXXXXXXXXXR------NGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQ 296
+ YRD+ Q+E + YE+D+DRGQ +A
Sbjct: 549 DEREQDWDRSERGEHREHRYKEEKDSYRDHRQRERDVGYEDDWDRGQSSSRPRSRSKAMP 608
Query: 295 EEDHRSRSRDTNYGKRRRAPSE 230
E+DHRSRSRD +YGKRRR PSE
Sbjct: 609 EDDHRSRSRDVDYGKRRRLPSE 630
>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 655
Score = 149 bits (377), Expect = 2e-33
Identities = 107/322 (33%), Positives = 129/322 (40%), Gaps = 11/322 (3%)
Frame = -3
Query: 1162 PMNEGVGRGG-ANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAMGSKXXXXXX 986
PMN+G GRGG NY GD G MG++
Sbjct: 335 PMNDGGGRGGNTNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRGRGPMGARNMIGSS 394
Query: 985 XXXXXXXXXXG-----QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXX 821
Q L GP F GP G+MHPQ MM GFD
Sbjct: 395 SGAGSGVGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGGGYGGFSGPG 453
Query: 820 XXXXXXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXX 641
AVN M L GVAPHVNPAFF GPHP
Sbjct: 454 FPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPGMWTDSSMGG 513
Query: 640 XXXXXXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD-----NSXX 476
YGG+D AS+YGYGE +H+KGARS+A SREK+ GSERD +
Sbjct: 514 WLGEEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGNTDRRH 573
Query: 475 XXXXXXXXXXXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQ 296
++ YRD Q++ + Y++++DRGQ A
Sbjct: 574 REEREQDWDRSERDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRGQSSSRSRSRSGAIP 633
Query: 295 EEDHRSRSRDTNYGKRRRAPSE 230
+EDHRSRSRD +YGKRRR PSE
Sbjct: 634 DEDHRSRSRDVDYGKRRRLPSE 655
>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
gi|567891321|ref|XP_006438181.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540376|gb|ESR51420.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540377|gb|ESR51421.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
Length = 655
Score = 149 bits (376), Expect = 2e-33
Identities = 107/322 (33%), Positives = 128/322 (39%), Gaps = 11/322 (3%)
Frame = -3
Query: 1162 PMNEGVGRGG-ANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAMGSKXXXXXX 986
PMN+G GRGG NY GD G MG++
Sbjct: 335 PMNDGGGRGGNTNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRGRGPMGARNMIGSS 394
Query: 985 XXXXXXXXXXG-----QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXX 821
Q L GP F GP G+MHPQ MM GFD
Sbjct: 395 SGAGSGAGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGGGYGGFSGPG 453
Query: 820 XXXXXXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXX 641
AVN M L GVAPHVNPAFF GPHP
Sbjct: 454 FPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPGMWTDSSMGG 513
Query: 640 XXXXXXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD-----NSXX 476
YGG+D AS+YGYGE SH+KGARS+ SREK+ GSERD +
Sbjct: 514 WVGEEHGRRTRESSYGGDDGASDYGYGEASHEKGARSTTASREKDRGSERDWSGNTDRRH 573
Query: 475 XXXXXXXXXXXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQ 296
++ YRD Q++ + Y++++DRGQ A
Sbjct: 574 REEREQDWDRSERDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRGQSSSRSRSRSGAIP 633
Query: 295 EEDHRSRSRDTNYGKRRRAPSE 230
+EDHRSRSRD +YGKRRR PSE
Sbjct: 634 DEDHRSRSRDVDYGKRRRLPSE 655
>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
gi|557540375|gb|ESR51419.1| hypothetical protein
CICLE_v10030915mg [Citrus clementina]
Length = 658
Score = 148 bits (373), Expect = 5e-33
Identities = 108/322 (33%), Positives = 129/322 (40%), Gaps = 11/322 (3%)
Frame = -3
Query: 1162 PMNEGVGRGG-ANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAMGSKXXXXXX 986
PMN+G GRGG NY GD G MG+K
Sbjct: 338 PMNDGGGRGGNMNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRGRGPMGAKNMMGSS 397
Query: 985 XXXXXXXXXXG-----QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXX 821
Q L GP F GP G+MHPQ MM GFD
Sbjct: 398 SGAGSGAGPAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGGGYGGFSGPG 456
Query: 820 XXXXXXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXX 641
AVN M L GVAPHVNPAFF GPHP
Sbjct: 457 FPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPGMWTDSSMGG 516
Query: 640 XXXXXXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD-----NSXX 476
YGG+D AS+YGYGE +H+KGARS+A SREK+ GSERD +
Sbjct: 517 WVGEEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGNTDRRH 576
Query: 475 XXXXXXXXXXXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQ 296
++ YRD Q++ + Y++++DRG RA
Sbjct: 577 REEREQDWDRSERDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRGPSSSRSRSRSRAIP 636
Query: 295 EEDHRSRSRDTNYGKRRRAPSE 230
+EDHRSRSRD +YGKRRR PSE
Sbjct: 637 DEDHRSRSRDVDYGKRRRLPSE 658
>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 658
Score = 147 bits (370), Expect = 1e-32
Identities = 107/322 (33%), Positives = 129/322 (40%), Gaps = 11/322 (3%)
Frame = -3
Query: 1162 PMNEGVGRGG-ANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAMGSKXXXXXX 986
PMN+G GRGG NY GD G MG++
Sbjct: 338 PMNDGGGRGGNMNYQSGDGGRNFGRGGWGRGGQGVPNRGPGGGAMRGRGPMGARNMIGSS 397
Query: 985 XXXXXXXXXXG-----QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXX 821
Q L GP F GP G+MHPQ MM GFD
Sbjct: 398 SGAGSGVGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGGGYGGFSGPG 456
Query: 820 XXXXXXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXX 641
AVN M L GVAPHVNPAFF GPHP
Sbjct: 457 FPGMLPSFPAVNAMGLAGVAPHVNPAFFNRGMAANGMGMMGSSGMDGPHPGMWTDSSMGG 516
Query: 640 XXXXXXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD-----NSXX 476
YGG+D AS+YGYGE +H+KGARS+A SREK+ GSERD +
Sbjct: 517 WLGEEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGNTDRRH 576
Query: 475 XXXXXXXXXXXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQ 296
++ YRD Q++ + Y++++DRG RA
Sbjct: 577 REEREQDWDRSERDHRDHRHREEKDSYRDRRQRDRDSTYDDNWDRGPSSSRSRSRSRAIP 636
Query: 295 EEDHRSRSRDTNYGKRRRAPSE 230
+EDHRSRSRD +YGKRRR PSE
Sbjct: 637 DEDHRSRSRDVDYGKRRRLPSE 658
>ref|XP_002312652.1| RNA recognition motif-containing family protein [Populus trichocarpa]
gi|222852472|gb|EEE90019.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 619
Score = 145 bits (367), Expect = 2e-32
Identities = 111/315 (35%), Positives = 129/315 (40%), Gaps = 5/315 (1%)
Frame = -3
Query: 1159 MNEGVGRGG-ANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAMGSKXXXXXXX 983
MN+G GRGG AN+ GD GAMG K
Sbjct: 323 MNDGAGRGGNANFQSGDGGRNYGRGAWGRGGQGILNRGPGGGPMRGRGAMGPKNMAGNVA 382
Query: 982 XXXXXXXXXG--QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXX 809
G Q L GPAF GP G+M PQGMM GFD
Sbjct: 383 GVGSGANGGGYGQGLAGPAFGGPAGGMMPPQGMMGAGFDPLYMGRGGGYGGFAGPGFPGM 442
Query: 808 XXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXX 629
AVN M L GVAPHVNPAFF GP+P
Sbjct: 443 LPSFPAVNSMGLAGVAPHVNPAFFARGMAPNGMGMMVSSGMDGPNPGMWESS-------- 494
Query: 628 XXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD--NSXXXXXXXXX 455
Y G++ ASEYGYGE +H+KGARSS SREKE GSERD +
Sbjct: 495 ----------YDGDEGASEYGYGEGNHEKGARSSGASREKERGSERDWSGNSDRRHRDER 544
Query: 454 XXXXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSR 275
++ YR + Q+E + YE+D DRG RAA EED+RSR
Sbjct: 545 EQDWDRPEREHRYKEEKDSYRGHRQRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSR 604
Query: 274 SRDTNYGKRRRAPSE 230
+RD +YGKRRR PSE
Sbjct: 605 TRDVDYGKRRRLPSE 619
>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
gi|223546091|gb|EEF47594.1| RNA binding protein, putative
[Ricinus communis]
Length = 644
Score = 144 bits (364), Expect = 5e-32
Identities = 114/321 (35%), Positives = 130/321 (40%), Gaps = 10/321 (3%)
Frame = -3
Query: 1162 PMNEGVGRGG-ANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--AMGSKXXXX 992
PMN+G GRGG NY GDA +MG+K
Sbjct: 325 PMNDGAGRGGNMNYQGGDAGRNFGRGGWGRGGQGILNRGPGGGGRMGGRGGSMGAKNIVG 384
Query: 991 XXXXXXXXXXXXG--QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXX 818
G Q L GPAF GP ++ PQ MM GFD
Sbjct: 385 GAGGVGSGANGGGYGQGLAGPAFGGPAGAMLPPQSMMRAGFDPTYMGRGAGYGGFAGPGF 444
Query: 817 XXXXXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXX 638
AVN M L GVAPHVNPAFF GP+
Sbjct: 445 PGMLPSFPAVNAMGLAGVAPHVNPAFFGRGMAPNGMGMMGPSGMDGPNAGMWSDTSMGGW 504
Query: 637 XXXXXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERDNSXXXXXXXX 458
YGG+D ASEYGYGEV+H+KGARSSA SREKE SERD S
Sbjct: 505 GEEPGRRTRESS-YGGDDGASEYGYGEVNHEKGARSSAASREKERASERDWSGNSDRRHR 563
Query: 457 XXXXXXXXXXXXXXXXXR-----NGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQE 293
R YRD+ Q+E + YE+D+DRGQ RA E
Sbjct: 564 DDREHDWDRSEREHKEHRYREEKESYRDHRQRERDSGYEDDWDRGQSSSRSRSRSRAVPE 623
Query: 292 EDHRSRSRDTNYGKRRRAPSE 230
ED+RSRSRD +YGKRRR PSE
Sbjct: 624 EDYRSRSRDADYGKRRRLPSE 644
>ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Populus trichocarpa]
gi|550329195|gb|ERP56065.1| hypothetical protein
POPTR_0010s06150g [Populus trichocarpa]
Length = 591
Score = 142 bits (359), Expect = 2e-31
Identities = 110/315 (34%), Positives = 128/315 (40%), Gaps = 5/315 (1%)
Frame = -3
Query: 1159 MNEGVGRGG-ANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAMGSKXXXXXXX 983
MN+G+GRGG ANY GD G MG K
Sbjct: 278 MNDGMGRGGNANYQSGDGGRNYGRGGWGRGGQGVLNRGPGGGPMRGRGGMGPKNMAGNVA 337
Query: 982 XXXXXXXXXG--QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXX 809
G Q + GPAF GP G+MH QGMM GFD
Sbjct: 338 GVGSGANGGGYGQGIAGPAFGGPAGGMMHHQGMMGAGFDPLYMGRGGGYGGFPGHGFPGM 397
Query: 808 XXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXX 629
AVN M L GVAPHVNPAFF GP+P
Sbjct: 398 LPSFPAVNSMGLAGVAPHVNPAFFARGMAPNGMGMMASSGMEGPNP-GKWPDTSMGGWGE 456
Query: 628 XXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD--NSXXXXXXXXX 455
Y G++ ASEYGYGE +H+KGARSS SREKE SERD +
Sbjct: 457 EPGRRTRESSYDGDEGASEYGYGEGNHEKGARSSGASREKERVSERDWSGNSDRRHRDER 516
Query: 454 XXXXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSR 275
++ YR + Q+E + YE+D DRG RAA EED+RSR
Sbjct: 517 EQDWDRSEREPKYREEKDTYRGHRQRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSR 576
Query: 274 SRDTNYGKRRRAPSE 230
SRD +YGKRRR PSE
Sbjct: 577 SRDVDYGKRRRPPSE 591
>ref|XP_002315647.1| RNA recognition motif-containing family protein [Populus trichocarpa]
gi|222864687|gb|EEF01818.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 573
Score = 142 bits (359), Expect = 2e-31
Identities = 110/315 (34%), Positives = 128/315 (40%), Gaps = 5/315 (1%)
Frame = -3
Query: 1159 MNEGVGRGG-ANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAMGSKXXXXXXX 983
MN+G+GRGG ANY GD G MG K
Sbjct: 278 MNDGMGRGGNANYQSGDGGRNYGRGGWGRGGQGVLNRGPGGGPMRGRGGMGPKNMAGNVA 337
Query: 982 XXXXXXXXXG--QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXX 809
G Q + GPAF GP G+MH QGMM GFD
Sbjct: 338 GVGSGANGGGYGQGIAGPAFGGPAGGMMHHQGMMGAGFDPLYMGRGGGYGGFPGHGFPGM 397
Query: 808 XXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXX 629
AVN M L GVAPHVNPAFF GP+P
Sbjct: 398 LPSFPAVNSMGLAGVAPHVNPAFFARGMAPNGMGMMASSGMEGPNPGKESS--------- 448
Query: 628 XXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD--NSXXXXXXXXX 455
Y G++ ASEYGYGE +H+KGARSS SREKE SERD +
Sbjct: 449 ----------YDGDEGASEYGYGEGNHEKGARSSGASREKERVSERDWSGNSDRRHRDER 498
Query: 454 XXXXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSR 275
++ YR + Q+E + YE+D DRG RAA EED+RSR
Sbjct: 499 EQDWDRSEREPKYREEKDTYRGHRQRERDSGYEDDRDRGHSSSRARSRSRAAPEEDYRSR 558
Query: 274 SRDTNYGKRRRAPSE 230
SRD +YGKRRR PSE
Sbjct: 559 SRDVDYGKRRRPPSE 573
>gb|EOY00736.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708840|gb|EOY00737.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708841|gb|EOY00738.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
Length = 652
Score = 140 bits (353), Expect = 1e-30
Identities = 91/242 (37%), Positives = 108/242 (44%), Gaps = 5/242 (2%)
Frame = -3
Query: 940 GPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXXXXXXXAVNPMCLPGVA 761
GPAF GP G+MHPQGMM GFD AVN M L GVA
Sbjct: 412 GPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVA 471
Query: 760 PHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXXXXXXXXXXXGYGGEDN 581
PHVNPAFF GPH YGGED
Sbjct: 472 PHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDASMGGWGGDEHGRRTRESSYGGEDG 531
Query: 580 ASEYGYGEVSHDKGARSSAVSREKEWGSERDNSXXXXXXXXXXXXXXXXXXXXXXXXXR- 404
ASEYGYG+ +H+KG RSS SREKE SER+ S R
Sbjct: 532 ASEYGYGDANHEKG-RSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRY 590
Query: 403 ----NGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSRSRDTNYGKRRRAP 236
+ YR++ +E + +Y++D+DRGQ A EE+HRSRSRD +YGK+RR P
Sbjct: 591 REEKDSYREHRHRERDLDYDDDWDRGQSSSRSRRRSHAMPEEEHRSRSRDVDYGKKRRLP 650
Query: 235 SE 230
SE
Sbjct: 651 SE 652
>gb|EOY00734.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708838|gb|EOY00735.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 653
Score = 132 bits (331), Expect = 3e-28
Identities = 88/242 (36%), Positives = 104/242 (42%), Gaps = 5/242 (2%)
Frame = -3
Query: 940 GPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXXXXXXXAVNPMCLPGVA 761
GP F GP G+MHPQGMM GFD AVN + L GVA
Sbjct: 413 GPPFGGPAGGMMHPQGMMGAGFDPTYMGRGGSYGGFPGPGFPGMLPSFPAVNTLGLAGVA 472
Query: 760 PHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXXXXXXXXXXXGYGGEDN 581
PHVNPAFF GPH YGGED
Sbjct: 473 PHVNPAFFGRGMAPNGMGMMGGPGMDGPHVGMWTDTSMGGWGGDEHGRRTRESSYGGEDG 532
Query: 580 ASEYGYGEVSHDKGARSSAVSREKEWGSERDNSXXXXXXXXXXXXXXXXXXXXXXXXXR- 404
ASEYGYG+ +H+KG RSS SREKE S+R+ S R
Sbjct: 533 ASEYGYGDANHEKG-RSSGASREKERVSDREWSGNSDRRHRDEKERDWDRSEREHREHRY 591
Query: 403 ----NGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSRSRDTNYGKRRRAP 236
+ YR++ +E + +Y++D DRGQ A EE RSRSRD +YGKRRR P
Sbjct: 592 REEKDSYREHRHRERDLDYDDDLDRGQSSSRSRRRSHAMPEEQRRSRSRDVDYGKRRRLP 651
Query: 235 SE 230
SE
Sbjct: 652 SE 653
>gb|EXB82464.1| Cleavage and polyadenylation specificity factor subunit [Morus
notabilis]
Length = 636
Score = 130 bits (326), Expect = 1e-27
Identities = 100/314 (31%), Positives = 117/314 (37%), Gaps = 3/314 (0%)
Frame = -3
Query: 1162 PMNEGVGRGG-ANYTPGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--AMGSKXXXX 992
P+N+GVGRGG N+ GD AMG+K
Sbjct: 328 PINDGVGRGGNPNFQSGDGGRNFGRGGWGRGGQGAPNRGPGSGGPMRGRGGAMGAKNMVG 387
Query: 991 XXXXXXXXXXXXGQVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXX 812
Q L GP F GP G+M+PQGMM GFD
Sbjct: 388 NNAGVGGGGYG--QGLAGPPFGGPAGGMMNPQGMMGTGFDPTYMGRGVGYGGFAGPAFPG 445
Query: 811 XXXXXXAVNPMCLPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXX 632
AVN M VAPHVNPAFF G
Sbjct: 446 MLPSFPAVNTMGFAAVAPHVNPAFFGRGMTNNGMGMVGSSLMDGHQGGMWNDPSIGGWGG 505
Query: 631 XXXXXXXXXXGYGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERDNSXXXXXXXXXX 452
YGG+D ASEYGYG+ +H+KG R R+ SER N
Sbjct: 506 EEHGRRTRESSYGGDDGASEYGYGDTNHEKGGRERGSERDWSGNSERRNHEERDQDWDRS 565
Query: 451 XXXXXXXXXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSRS 272
+G RDY KE E +YE+D+DRGQ R QE+ HRSRS
Sbjct: 566 QKEQKEHRYREGK---DGSRDYRPKERELDYEDDWDRGQSSSRLRSRSRVVQEDHHRSRS 622
Query: 271 RDTNYGKRRRAPSE 230
RD +YGKRRR PSE
Sbjct: 623 RDVDYGKRRRLPSE 636
>ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309507 [Fragaria vesca
subsp. vesca]
Length = 646
Score = 130 bits (326), Expect = 1e-27
Identities = 86/247 (34%), Positives = 104/247 (42%), Gaps = 6/247 (2%)
Frame = -3
Query: 952 QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXXXXXXXAVNPMCL 773
Q LGGP F GP+ G+M+ GMM PGFD VN M L
Sbjct: 400 QGLGGPGFGGPVGGMMNAPGMMGPGFDPTYMGRGGGYGGFPGPGFPGMLPQFPGVNAMGL 459
Query: 772 PGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXXXXXXXXXXXGYG 593
GVAPHVNPAFF G H YG
Sbjct: 460 AGVAPHVNPAFFGRGMATNGMGMMGSSGMEGHHAPMWNDPSMAGWTGEEQDRRTRESSYG 519
Query: 592 GEDNASEYG-YGEVSHDKGARSSAVSREKEWGSERD-----NSXXXXXXXXXXXXXXXXX 431
G+D SEYG YGE +H+K RSSA RE+E SER+
Sbjct: 520 GDDGGSEYGNYGEANHEKPVRSSAAPRERERESEREWTGTSERRHRDEREQDWDRSEREH 579
Query: 430 XXXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSRSRDTNYGK 251
++ YRD+ ++E + YE+D DRG +A E+DHRSRSRD +YGK
Sbjct: 580 REPRYKEEKDSYRDHRRRERDVAYEDDRDRGHSSSRPRSRSKAMPEDDHRSRSRDVDYGK 639
Query: 250 RRRAPSE 230
RRR PSE
Sbjct: 640 RRRLPSE 646
>gb|EOY00740.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
Length = 656
Score = 127 bits (318), Expect = 1e-26
Identities = 86/245 (35%), Positives = 104/245 (42%), Gaps = 5/245 (2%)
Frame = -3
Query: 940 GPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXXXXXXXAVNPMCLPGVA 761
GPAF GP G+MHPQGMM GFD AVN M L GVA
Sbjct: 412 GPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVA 471
Query: 760 PHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXXXXXXXXXXXGYGGEDN 581
PHVNPAFF GPH YGGED
Sbjct: 472 PHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDASMGGWGGDEHGRRTRESSYGGEDG 531
Query: 580 ASEYGYGEVSHDKGARSSAVSREKEWGSERDNSXXXXXXXXXXXXXXXXXXXXXXXXXR- 404
ASEYGYG+ +H+KG RSS SREKE SER+ S R
Sbjct: 532 ASEYGYGDANHEKG-RSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRY 590
Query: 403 ----NGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSRSRDTNYGKRRRAP 236
+ YR++ +E + +Y++D+DRGQ A EE+HRSRSRD Y + + +
Sbjct: 591 REEKDSYREHRHRERDLDYDDDWDRGQSSSRSRRRSHAMPEEEHRSRSRDVGYREEKDSY 650
Query: 235 SE*SH 221
E H
Sbjct: 651 REHRH 655
>ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [Amborella trichopoda]
gi|548855834|gb|ERN13697.1| hypothetical protein
AMTR_s00049p00146760 [Amborella trichopoda]
Length = 659
Score = 114 bits (286), Expect = 6e-23
Identities = 82/246 (33%), Positives = 101/246 (41%), Gaps = 5/246 (2%)
Frame = -3
Query: 952 QVLGGPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXXXXXXXAVNPMC- 776
Q L P GP GL+HPQGMM GFD + +PM
Sbjct: 415 QALSAPPLGGPPGGLLHPQGMMGSGFDPTYGAHLGRGSGYGGFSGPHFPGMLPSFSPMGT 474
Query: 775 --LPGVAPHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXXXXXXXXXXX 602
LPGVAPHVNPAFF G H
Sbjct: 475 VGLPGVAPHVNPAFFGRGVSANGMGMMGSGAMDGHHGGMWGDSSMGGGVGWGNEEHGRRT 534
Query: 601 GYG--GEDNASEYGYGEVSHDKGARSSAVSREKEWGSERDNSXXXXXXXXXXXXXXXXXX 428
G+D AS+YGYG+ H++G S REK+ GSERD S
Sbjct: 535 RESSYGDDGASDYGYGDGGHERGGGRSNPGREKDRGSERDWSSGPERRHRDDRDSDWDRD 594
Query: 427 XXXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSRSRDTNYGKR 248
+GY D+ Q+E + + E+D+DRG+ R QEED RSRS+D +YGKR
Sbjct: 595 PRYKDEK-DGYSDHRQRERDWDNEDDWDRGRTSSRSRSKSRMMQEEDQRSRSKDVDYGKR 653
Query: 247 RRAPSE 230
RR PSE
Sbjct: 654 RRVPSE 659
>gb|EOY00739.1| RNA-binding family protein isoform 4 [Theobroma cacao]
Length = 697
Score = 113 bits (282), Expect = 2e-22
Identities = 91/287 (31%), Positives = 104/287 (36%), Gaps = 50/287 (17%)
Frame = -3
Query: 940 GPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXXXXXXXAVNPMCLPGVA 761
GPAF GP G+MHPQGMM GFD AVN M L GVA
Sbjct: 412 GPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVA 471
Query: 760 PHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXXXXXXXXXXXGYGGEDN 581
PHVNPAFF GPH YGGED
Sbjct: 472 PHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDASMGGWGGDEHGRRTRESSYGGEDG 531
Query: 580 ASEYGYGEVSHDKGARSSAVSREKEWGSERD-----NSXXXXXXXXXXXXXXXXXXXXXX 416
ASEYGYG+ +H+KG RSS SREKE SER+ +
Sbjct: 532 ASEYGYGDANHEKG-RSSGASREKERVSEREWSGNSDRRHRDEKEQDWDRSEREHREHRY 590
Query: 415 XXXRNGYRDYCQKE----------HEPEYEEDYD-------------------------- 344
++ YR++ +E H E E D+D
Sbjct: 591 REEKDSYREHRHREREWSGNSDRRHRDEKERDWDRSEREHREHRYREEKDSYREHRHRER 650
Query: 343 ---------RGQXXXXXXXXXRAAQEEDHRSRSRDTNYGKRRRAPSE 230
RGQ A EE RSRSRD +YGKRRR PSE
Sbjct: 651 DLDYDDDLDRGQSSSRSRRRSHAMPEEQRRSRSRDVDYGKRRRLPSE 697
>emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera]
Length = 168
Score = 105 bits (263), Expect = 3e-20
Identities = 58/125 (46%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Frame = -3
Query: 598 YGGEDNASEYGYGEVSHDKGARSSAVSREKEWGSERD--NSXXXXXXXXXXXXXXXXXXX 425
YGG+D AS+YGYGEV+H+K RS+ SREKE GSERD +
Sbjct: 44 YGGDDGASDYGYGEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDEREQDWERSDKD 103
Query: 424 XXXXXXRNGYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSRSRDTNYGKRR 245
++GYRD+ Q+E + E+D+DRGQ RA +EDHRSRSRD +YGKRR
Sbjct: 104 HRYREEKDGYRDHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRR 163
Query: 244 RAPSE 230
R PSE
Sbjct: 164 RLPSE 168
>gb|EOY00741.1| RNA-binding family protein isoform 6 [Theobroma cacao]
Length = 602
Score = 100 bits (249), Expect = 1e-18
Identities = 75/232 (32%), Positives = 89/232 (38%)
Frame = -3
Query: 940 GPAFVGPLAGLMHPQGMMDPGFDXXXXXXXXXXXXXXXXXXXXXXXXXXAVNPMCLPGVA 761
GPAF GP G+MHPQGMM GFD AVN M L GVA
Sbjct: 412 GPAFGGPAGGMMHPQGMMGAGFDPTYMVRGGGYGGFPGPGFPGMLPSFPAVNTMGLAGVA 471
Query: 760 PHVNPAFFXXXXXXXXXXXXXXXXXXGPHPXXXXXXXXXXXXXXXXXXXXXXXGYGGEDN 581
PHVNPAFF GPH YGGED
Sbjct: 472 PHVNPAFFGRGMAPNGMGMMGASGMDGPHAGMWTDASMGGWGGDEHGRRTRESSYGGEDG 531
Query: 580 ASEYGYGEVSHDKGARSSAVSREKEWGSERDNSXXXXXXXXXXXXXXXXXXXXXXXXXRN 401
ASEYGYG+ +H+KG RSS SREKE SER+ +
Sbjct: 532 ASEYGYGDANHEKG-RSSGASREKERVSERE---------------------------WS 563
Query: 400 GYRDYCQKEHEPEYEEDYDRGQXXXXXXXXXRAAQEEDHRSRSRDTNYGKRR 245
G D + H E E+D+DR + + +HR R +Y + R
Sbjct: 564 GNSD---RRHRDEKEQDWDRSE-----------REHREHRYREEKDSYREHR 601