BLASTX nr result
ID: Atropa21_contig00029125
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00029125
(583 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I an... 233 5e-77
ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I an... 231 3e-76
gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma ... 204 4e-63
ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I an... 202 2e-62
gb|EOY11972.1| RNA polymerase I subunit 43 isoform 4 [Theobroma ... 191 6e-59
ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I an... 193 1e-57
ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citr... 198 4e-57
ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutr... 196 1e-56
ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I an... 198 1e-56
ref|XP_006857745.1| hypothetical protein AMTR_s00061p00192780 [A... 190 3e-56
ref|XP_006392109.1| hypothetical protein EUTSA_v10023529mg [Eutr... 186 3e-56
ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata] ... 197 5e-55
gb|EOY11970.1| RNA polymerase I subunit 43 isoform 2 [Theobroma ... 177 5e-55
ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thalia... 193 4e-54
ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I an... 183 7e-54
ref|XP_006283792.1| hypothetical protein CARUB_v10004883mg [Caps... 191 9e-54
gb|ESW18590.1| hypothetical protein PHAVU_006G053600g [Phaseolus... 186 1e-53
gb|EMJ06508.1| hypothetical protein PRUPE_ppa006811mg [Prunus pe... 177 2e-53
ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I an... 182 4e-53
ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I an... 184 6e-53
>ref|XP_006344900.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Solanum tuberosum]
Length = 393
Score = 233 bits (595), Expect(2) = 5e-77
Identities = 117/142 (82%), Positives = 125/142 (88%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAYA+MGVD S RFEQFRNNFK FDMIGIDPSLANAFRRILIAE+PT
Sbjct: 64 YSGAYAAMGVDNSVRFEQFRNNFKVEIVRLEEDELEFDMIGIDPSLANAFRRILIAELPT 123
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCK 363
+AIEKVLIANNTSIIQDEVLAHRLGLIPI+VDPRLFEYMSENDVPNEKNT+VFKLHARC
Sbjct: 124 MAIEKVLIANNTSIIQDEVLAHRLGLIPIEVDPRLFEYMSENDVPNEKNTIVFKLHARCT 183
Query: 364 KGTERLRVLPCELQWLPNGSEL 429
KG++RLRVL EL+WLPNGSEL
Sbjct: 184 KGSDRLRVLSSELKWLPNGSEL 205
Score = 80.9 bits (198), Expect(2) = 5e-77
Identities = 39/44 (88%), Positives = 40/44 (90%)
Frame = +2
Query: 431 LATESQASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
L TE AS+SSAKPKTYTSFSCSQDT PEFSNDPIAPKDADIIV
Sbjct: 207 LGTEHSASSSSAKPKTYTSFSCSQDTLPEFSNDPIAPKDADIIV 250
>ref|XP_004251939.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Solanum lycopersicum]
Length = 393
Score = 231 bits (590), Expect(2) = 3e-76
Identities = 116/142 (81%), Positives = 124/142 (87%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAYA+MGVD S RFEQFR+NFK FDMIGIDPSLANAFRRILIAE+PT
Sbjct: 64 YSGAYAAMGVDNSVRFEQFRDNFKVEIVRLEEDELEFDMIGIDPSLANAFRRILIAELPT 123
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCK 363
+AIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNT+VFKLH RC
Sbjct: 124 MAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTIVFKLHVRCT 183
Query: 364 KGTERLRVLPCELQWLPNGSEL 429
KG++RLRVL EL+WLPNGSEL
Sbjct: 184 KGSDRLRVLSSELKWLPNGSEL 205
Score = 80.1 bits (196), Expect(2) = 3e-76
Identities = 38/44 (86%), Positives = 41/44 (93%)
Frame = +2
Query: 431 LATESQASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
L TE AS+SSAKPKTYTSFSCSQDTRPEFS++PIAPKDADIIV
Sbjct: 207 LGTEHSASSSSAKPKTYTSFSCSQDTRPEFSDEPIAPKDADIIV 250
>gb|EOY11969.1| RNA polymerase I subunit 43 isoform 1 [Theobroma cacao]
Length = 383
Score = 204 bits (520), Expect(2) = 4e-63
Identities = 101/142 (71%), Positives = 115/142 (80%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAYASMGVD S R + F +NF+ FDMIGID ++ANAFRRILIAE+PT
Sbjct: 54 YSGAYASMGVDNSLRLDHFCHNFRVEVVRLTEEDMEFDMIGIDAAIANAFRRILIAELPT 113
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCK 363
+AIEKVLIANNTS++QDEVLAHRLGLIPI VDPRLFEYMSEND PNEKNT+VFKLH CK
Sbjct: 114 MAIEKVLIANNTSVVQDEVLAHRLGLIPISVDPRLFEYMSENDQPNEKNTIVFKLHVHCK 173
Query: 364 KGTERLRVLPCELQWLPNGSEL 429
+G+ R+ V EL+WLPNGSEL
Sbjct: 174 RGSPRITVKSDELKWLPNGSEL 195
Score = 63.2 bits (152), Expect(2) = 4e-63
Identities = 28/38 (73%), Positives = 35/38 (92%)
Frame = +2
Query: 449 ASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
AS+S++KP+TYTSFSCSQDT PEF+N+PIAPK DII+
Sbjct: 203 ASDSASKPETYTSFSCSQDTLPEFANNPIAPKYPDIII 240
>ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Vitis vinifera] gi|296089944|emb|CBI39763.3| unnamed
protein product [Vitis vinifera]
Length = 372
Score = 202 bits (515), Expect(2) = 2e-62
Identities = 104/153 (67%), Positives = 118/153 (77%), Gaps = 3/153 (1%)
Frame = +1
Query: 1 QYSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVP 180
QYSGAY+SMGVD S R +QF NNF+ FDMIGIDPS+ANAFRRILIAE+P
Sbjct: 42 QYSGAYSSMGVDNSLRMDQFCNNFRVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELP 101
Query: 181 TIAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARC 360
T+AIEKVLIANNTSI+QDEVLAHRLGLIPI DPRLF+ +SEND PNEKNT+VF LH RC
Sbjct: 102 TMAIEKVLIANNTSIVQDEVLAHRLGLIPINADPRLFDDLSENDTPNEKNTIVFNLHVRC 161
Query: 361 KKGTERLRVLPCELQWLPNGSEL---TSNRKSS 450
++G RL V EL+WLP+GSE T N SS
Sbjct: 162 ERGGPRLTVKSNELKWLPHGSEFPLATENTTSS 194
Score = 63.2 bits (152), Expect(2) = 2e-62
Identities = 29/44 (65%), Positives = 36/44 (81%)
Frame = +2
Query: 431 LATESQASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
LATE+ S+S++KPKTYTSFSCSQD+ PEFS+ I PK DII+
Sbjct: 186 LATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIII 229
>gb|EOY11972.1| RNA polymerase I subunit 43 isoform 4 [Theobroma cacao]
Length = 323
Score = 191 bits (484), Expect(2) = 6e-59
Identities = 94/135 (69%), Positives = 108/135 (80%)
Frame = +1
Query: 25 MGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPTIAIEKVL 204
MGVD S R + F +NF+ FDMIGID ++ANAFRRILIAE+PT+AIEKVL
Sbjct: 1 MGVDNSLRLDHFCHNFRVEVVRLTEEDMEFDMIGIDAAIANAFRRILIAELPTMAIEKVL 60
Query: 205 IANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCKKGTERLR 384
IANNTS++QDEVLAHRLGLIPI VDPRLFEYMSEND PNEKNT+VFKLH CK+G+ R+
Sbjct: 61 IANNTSVVQDEVLAHRLGLIPISVDPRLFEYMSENDQPNEKNTIVFKLHVHCKRGSPRIT 120
Query: 385 VLPCELQWLPNGSEL 429
V EL+WLPNGSEL
Sbjct: 121 VKSDELKWLPNGSEL 135
Score = 63.2 bits (152), Expect(2) = 6e-59
Identities = 28/38 (73%), Positives = 35/38 (92%)
Frame = +2
Query: 449 ASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
AS+S++KP+TYTSFSCSQDT PEF+N+PIAPK DII+
Sbjct: 143 ASDSASKPETYTSFSCSQDTLPEFANNPIAPKYPDIII 180
>ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
gi|449522768|ref|XP_004168398.1| PREDICTED: DNA-directed
RNA polymerases I and III subunit RPAC1-like [Cucumis
sativus]
Length = 391
Score = 193 bits (490), Expect(2) = 1e-57
Identities = 97/142 (68%), Positives = 111/142 (78%)
Frame = +1
Query: 1 QYSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVP 180
QYSGA+ASMG D S R + FRNNFK FDMIGIDP+LANAFRRILI+EVP
Sbjct: 64 QYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILISEVP 123
Query: 181 TIAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARC 360
T+AIEKVL ANNTSI+QDEVLAHRLGL+PI+VDPRLF+Y S+ D PNE NT+VF+LHA C
Sbjct: 124 TMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACC 182
Query: 361 KKGTERLRVLPCELQWLPNGSE 426
++G RL V L WLPNGSE
Sbjct: 183 ERGKPRLTVTSKALTWLPNGSE 204
Score = 56.6 bits (135), Expect(2) = 1e-57
Identities = 28/41 (68%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Frame = +2
Query: 443 SQASNSSAKPKTYTSFSCSQDT-RPEFSNDPIAPKDADIIV 562
S S S++KPKTYTSFSCSQ+T EFSN+PI PKD+DII+
Sbjct: 209 SDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPIGPKDSDIIL 249
>ref|XP_006452630.1| hypothetical protein CICLE_v10008413mg [Citrus clementina]
gi|557555856|gb|ESR65870.1| hypothetical protein
CICLE_v10008413mg [Citrus clementina]
Length = 421
Score = 198 bits (504), Expect(2) = 4e-57
Identities = 101/147 (68%), Positives = 114/147 (77%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAYASMGVD S + + F NNF+ FD+IGID ++ANAFRRILIAE+PT
Sbjct: 93 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 152
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCK 363
+AIEKVLIANNTS+IQDEVLAHRLGLIPI VDPRLFEYMSEND NEKNT+VFKLH C+
Sbjct: 153 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE 212
Query: 364 KGTERLRVLPCELQWLPNGSELTSNRK 444
+G RL V EL+WLPNGSEL K
Sbjct: 213 RGGPRLTVKTNELKWLPNGSELPLETK 239
Score = 49.3 bits (116), Expect(2) = 4e-57
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +2
Query: 452 SNSSAKPKTYTSFSCSQDTRPEFSNDPIAP 541
SN S+KP+TYTSFS SQD PEFSN+PI P
Sbjct: 242 SNPSSKPRTYTSFSSSQDLLPEFSNNPIRP 271
>ref|XP_006414263.1| hypothetical protein EUTSA_v10025407mg [Eutrema salsugineum]
gi|557115433|gb|ESQ55716.1| hypothetical protein
EUTSA_v10025407mg [Eutrema salsugineum]
Length = 394
Score = 196 bits (497), Expect(2) = 1e-56
Identities = 95/143 (66%), Positives = 112/143 (78%)
Frame = +1
Query: 1 QYSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVP 180
QYSGAY +GVD S + E F NF+ FDMIGID ++ANAFRRIL+AE+P
Sbjct: 50 QYSGAYKFVGVDNSVKLESFSENFRVDVISEDGMELEFDMIGIDAAIANAFRRILLAELP 109
Query: 181 TIAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARC 360
T+AIEKV +ANNTS++QDEVLA R+GLIPI DPRLFEY+SEND PNEKNT+VFKLHA+C
Sbjct: 110 TMAIEKVFVANNTSVVQDEVLAQRMGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHAKC 169
Query: 361 KKGTERLRVLPCELQWLPNGSEL 429
+KG RL+VL EL WLPNGSEL
Sbjct: 170 EKGEPRLKVLTKELIWLPNGSEL 192
Score = 50.4 bits (119), Expect(2) = 1e-56
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = +2
Query: 446 QASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
++ S++KP+TYTSFS SQD+ PEF+N+PI P DI++
Sbjct: 195 ESGGSTSKPRTYTSFSRSQDSFPEFANNPITPSYPDILI 233
>ref|XP_006474843.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Citrus sinensis]
Length = 382
Score = 198 bits (504), Expect(2) = 1e-56
Identities = 101/147 (68%), Positives = 114/147 (77%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAYASMGVD S + + F NNF+ FD+IGID ++ANAFRRILIAE+PT
Sbjct: 54 YSGAYASMGVDNSLQLDHFCNNFRVEVIRLTKDDMEFDLIGIDAAIANAFRRILIAELPT 113
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCK 363
+AIEKVLIANNTS+IQDEVLAHRLGLIPI VDPRLFEYMSEND NEKNT+VFKLH C+
Sbjct: 114 MAIEKVLIANNTSVIQDEVLAHRLGLIPIIVDPRLFEYMSENDTSNEKNTIVFKLHVLCE 173
Query: 364 KGTERLRVLPCELQWLPNGSELTSNRK 444
+G RL V EL+WLPNGSEL K
Sbjct: 174 RGGPRLTVKTNELKWLPNGSELPLETK 200
Score = 47.8 bits (112), Expect(2) = 1e-56
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +2
Query: 452 SNSSAKPKTYTSFSCSQDTRPEFSNDPIAP 541
SN +KP+TYTSFS SQD+ PEFSN+PI P
Sbjct: 203 SNPLSKPRTYTSFSSSQDSLPEFSNNPIRP 232
>ref|XP_006857745.1| hypothetical protein AMTR_s00061p00192780 [Amborella trichopoda]
gi|548861841|gb|ERN19212.1| hypothetical protein
AMTR_s00061p00192780 [Amborella trichopoda]
Length = 304
Score = 190 bits (482), Expect(2) = 3e-56
Identities = 101/154 (65%), Positives = 111/154 (72%), Gaps = 11/154 (7%)
Frame = +1
Query: 1 QYSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXX-----------FDMIGIDPSLAN 147
QYSGAYASMGVD S E+F NFK FDM+GID SLAN
Sbjct: 42 QYSGAYASMGVDNSLNLEKFCENFKVEVIDIKDEESSGTDWDKENSIEFDMVGIDASLAN 101
Query: 148 AFRRILIAEVPTIAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEK 327
AFRRILIAEVPT+AIEKVLIANNTS++QDEVLAHRLGLIPIKVDPRLFEY SEND EK
Sbjct: 102 AFRRILIAEVPTMAIEKVLIANNTSVVQDEVLAHRLGLIPIKVDPRLFEYKSENDAATEK 161
Query: 328 NTVVFKLHARCKKGTERLRVLPCELQWLPNGSEL 429
NT+VFKLH +C K + RL V +L+WLP GSEL
Sbjct: 162 NTIVFKLHVKCGKDSTRLTVKSDQLKWLPGGSEL 195
Score = 55.1 bits (131), Expect(2) = 3e-56
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = +2
Query: 449 ASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIVGNRARS 580
A++SS+K KTYTSFSCSQD+ PEFSN+PI P DI + R RS
Sbjct: 199 AADSSSKIKTYTSFSCSQDSLPEFSNNPITPAYPDITIA-RLRS 241
>ref|XP_006392109.1| hypothetical protein EUTSA_v10023529mg [Eutrema salsugineum]
gi|557088615|gb|ESQ29395.1| hypothetical protein
EUTSA_v10023529mg [Eutrema salsugineum]
Length = 376
Score = 186 bits (471), Expect(2) = 3e-56
Identities = 95/141 (67%), Positives = 106/141 (75%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
Y G S+GVD S + + F +FK FDMIGID + ANAFRRILIAEVPT
Sbjct: 51 YMGGDISVGVDESVKLKNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPT 110
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCK 363
+AIEKVLIA NTS+I DEVLAHR+GLIPI VDPRLFEY+SEND PNEKNT+VFKLH +C
Sbjct: 111 MAIEKVLIAYNTSVIIDEVLAHRIGLIPIAVDPRLFEYLSENDQPNEKNTIVFKLHVKCP 170
Query: 364 KGTERLRVLPCELQWLPNGSE 426
KG RLRVL EL WLPNGSE
Sbjct: 171 KGAPRLRVLTNELIWLPNGSE 191
Score = 58.9 bits (141), Expect(2) = 3e-56
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +2
Query: 446 QASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
++ S++KPKTYTSFSCSQD+ PEF+N+PIAP DI++
Sbjct: 195 ESGGSNSKPKTYTSFSCSQDSLPEFANNPIAPSHLDILI 233
>ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata
subsp. lyrata]
Length = 385
Score = 197 bits (500), Expect(2) = 5e-55
Identities = 96/142 (67%), Positives = 110/142 (77%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAYASMGVD S R E F +FK FDMIG+ +ANAFRRIL+AE+P+
Sbjct: 59 YSGAYASMGVDNSVRLENFSEDFKVDVISLTETYMVFDMIGVPAGIANAFRRILLAELPS 118
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCK 363
+AIEKV +ANNTS+IQDEVLAHRLGLIPI DPRLFEY+SEND PNEKNT+VFKLH +C
Sbjct: 119 MAIEKVFVANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCP 178
Query: 364 KGTERLRVLPCELQWLPNGSEL 429
KG R +VL EL+WLPNGSEL
Sbjct: 179 KGDPRRKVLTSELKWLPNGSEL 200
Score = 43.9 bits (102), Expect(2) = 5e-55
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +2
Query: 446 QASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
++ + KPKTYTSFS SQD+ P F+ +PI P DI++
Sbjct: 203 ESGGLTTKPKTYTSFSHSQDSFPGFAKNPITPSFQDILI 241
>gb|EOY11970.1| RNA polymerase I subunit 43 isoform 2 [Theobroma cacao]
Length = 311
Score = 177 bits (450), Expect(2) = 5e-55
Identities = 85/106 (80%), Positives = 96/106 (90%)
Frame = +1
Query: 112 FDMIGIDPSLANAFRRILIAEVPTIAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLF 291
FDMIGID ++ANAFRRILIAE+PT+AIEKVLIANNTS++QDEVLAHRLGLIPI VDPRLF
Sbjct: 18 FDMIGIDAAIANAFRRILIAELPTMAIEKVLIANNTSVVQDEVLAHRLGLIPISVDPRLF 77
Query: 292 EYMSENDVPNEKNTVVFKLHARCKKGTERLRVLPCELQWLPNGSEL 429
EYMSEND PNEKNT+VFKLH CK+G+ R+ V EL+WLPNGSEL
Sbjct: 78 EYMSENDQPNEKNTIVFKLHVHCKRGSPRITVKSDELKWLPNGSEL 123
Score = 63.2 bits (152), Expect(2) = 5e-55
Identities = 28/38 (73%), Positives = 35/38 (92%)
Frame = +2
Query: 449 ASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
AS+S++KP+TYTSFSCSQDT PEF+N+PIAPK DII+
Sbjct: 131 ASDSASKPETYTSFSCSQDTLPEFANNPIAPKYPDIII 168
>ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase
subunit (isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit
[Arabidopsis thaliana] gi|2462755|gb|AAB71974.1| RNA
polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|24899667|gb|AAN65048.1| RNA polymerase subunit
(isoform B) [Arabidopsis thaliana]
gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43
[Arabidopsis thaliana] gi|1586550|prf||2204246B RNA
polymerase
Length = 385
Score = 193 bits (491), Expect(2) = 4e-54
Identities = 94/142 (66%), Positives = 110/142 (77%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
+SGAY+SMGVD S R E F +FK FDMIG+ +ANAFRRIL+AE+P+
Sbjct: 59 FSGAYSSMGVDNSVRLENFSEDFKVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPS 118
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCK 363
+AIEKV +ANNTS+IQDEVLAHRLGLIPI DPRLFEY+SEND PNEKNT+VFKLH +C
Sbjct: 119 MAIEKVYVANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCL 178
Query: 364 KGTERLRVLPCELQWLPNGSEL 429
KG R +VL EL+WLPNGSEL
Sbjct: 179 KGDPRRKVLTSELKWLPNGSEL 200
Score = 44.3 bits (103), Expect(2) = 4e-54
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +2
Query: 446 QASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
++ S+ PKTYTSF+ SQD+ PEF+ +PI P DI++
Sbjct: 203 ESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILI 241
>ref|XP_004498147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cicer arietinum]
Length = 388
Score = 183 bits (464), Expect(2) = 7e-54
Identities = 95/146 (65%), Positives = 109/146 (74%), Gaps = 1/146 (0%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAYA++GVD S R + F NFK FDMIGIDPSLANAFRRILIAEVPT
Sbjct: 59 YSGAYAALGVDNSVRLDSFCQNFKVEVKKLTDDDIEFDMIGIDPSLANAFRRILIAEVPT 118
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYM-SENDVPNEKNTVVFKLHARC 360
+AIE+V IANNTSIIQDEVL+HRLGLIPI DP LFEY + NEKNT+VFKLH RC
Sbjct: 119 MAIERVYIANNTSIIQDEVLSHRLGLIPINADPTLFEYPDNAGGENNEKNTIVFKLHVRC 178
Query: 361 KKGTERLRVLPCELQWLPNGSELTSN 438
+KG R+ V EL+WLPNGS+L ++
Sbjct: 179 EKGQPRITVKSDELKWLPNGSDLIAD 204
Score = 53.9 bits (128), Expect(2) = 7e-54
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +2
Query: 431 LATESQASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
L + N+ +KPKT+TSFSCSQD+ PEFS P+ P + DII+
Sbjct: 201 LIADDTKPNAGSKPKTFTSFSCSQDSLPEFSKKPLGPTNPDIIL 244
>ref|XP_006283792.1| hypothetical protein CARUB_v10004883mg [Capsella rubella]
gi|482552497|gb|EOA16690.1| hypothetical protein
CARUB_v10004883mg [Capsella rubella]
Length = 424
Score = 191 bits (485), Expect(2) = 9e-54
Identities = 93/142 (65%), Positives = 106/142 (74%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAYA MGVD S E F NFK FDMIGI +ANAFRRIL+AE+P+
Sbjct: 59 YSGAYAFMGVDNSVNLENFSENFKVDVISLTETDMVFDMIGIPAGIANAFRRILLAELPS 118
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARCK 363
+AIEKV + NNTSI+QDEVLAHRLGL+PI DPRLFEY+SEND PNE NT+VFKLH +C
Sbjct: 119 MAIEKVFVVNNTSIVQDEVLAHRLGLVPIAADPRLFEYLSENDQPNEMNTIVFKLHVKCP 178
Query: 364 KGTERLRVLPCELQWLPNGSEL 429
KG R +VL EL+WLPNGSEL
Sbjct: 179 KGDSRRKVLTSELKWLPNGSEL 200
Score = 45.4 bits (106), Expect(2) = 9e-54
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = +2
Query: 446 QASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
+++ S K KTYTSFS SQD+ PEF+++PI P DI++
Sbjct: 203 ESAGGSTKQKTYTSFSRSQDSFPEFADNPITPSFQDILL 241
>gb|ESW18590.1| hypothetical protein PHAVU_006G053600g [Phaseolus vulgaris]
Length = 386
Score = 186 bits (472), Expect(2) = 1e-53
Identities = 93/145 (64%), Positives = 113/145 (77%), Gaps = 1/145 (0%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAY ++GVD S +F++FR NFK FDMIGIDP++ANAFRRILI+EVPT
Sbjct: 57 YSGAYGALGVDNSQQFDRFRENFKVEVKRLTDSDMEFDMIGIDPAIANAFRRILISEVPT 116
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYM-SENDVPNEKNTVVFKLHARC 360
+AIE+V IANNTSI+QDEVL+HRLGLIPI++DPRLFEY S D NEKNT+VF+LH RC
Sbjct: 117 MAIERVYIANNTSIVQDEVLSHRLGLIPIRIDPRLFEYPDSAGDDNNEKNTIVFRLHERC 176
Query: 361 KKGTERLRVLPCELQWLPNGSELTS 435
+ G R+ V +L+WLPNGSEL S
Sbjct: 177 RVGQPRITVKSDKLKWLPNGSELPS 201
Score = 50.1 bits (118), Expect(2) = 1e-53
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = +2
Query: 431 LATESQASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
L +E N+S+KPKT+TSF+CSQ++ PEFS++ + D+DII+
Sbjct: 199 LPSEDVKPNTSSKPKTFTSFTCSQNSLPEFSSNSLELTDSDIIL 242
>gb|EMJ06508.1| hypothetical protein PRUPE_ppa006811mg [Prunus persica]
Length = 394
Score = 177 bits (450), Expect(2) = 2e-53
Identities = 95/150 (63%), Positives = 112/150 (74%)
Frame = +1
Query: 1 QYSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVP 180
QYSGAY+SM V+ S + F +NF+ FDMIGIDP+LANAFRRILI+EVP
Sbjct: 65 QYSGAYSSMRVENSF-LDNFCDNFRVEVIRLTEDEMEFDMIGIDPALANAFRRILISEVP 123
Query: 181 TIAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYMSENDVPNEKNTVVFKLHARC 360
T+AIEKVLIANNTS+IQDEVLAHRLGLIPIK DPRLFEY +EN+ +EKNT+VFKLH C
Sbjct: 124 TMAIEKVLIANNTSVIQDEVLAHRLGLIPIKADPRLFEY-AENNTASEKNTIVFKLHVCC 182
Query: 361 KKGTERLRVLPCELQWLPNGSELTSNRKSS 450
++ +RL V EL WLPNGSE + S
Sbjct: 183 ERSGQRLSVKSKELIWLPNGSEFPLESQDS 212
Score = 58.2 bits (139), Expect(2) = 2e-53
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +2
Query: 431 LATESQASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
L ++ + SS+KPKTYTSF+CSQD+ PEFS++PIAP DI++
Sbjct: 207 LESQDSKTGSSSKPKTYTSFTCSQDSLPEFSSNPIAPALGDILI 250
>ref|XP_004488284.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cicer arietinum]
Length = 388
Score = 182 bits (462), Expect(2) = 4e-53
Identities = 95/146 (65%), Positives = 109/146 (74%), Gaps = 1/146 (0%)
Frame = +1
Query: 4 YSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVPT 183
YSGAYA++GVD S R + F NFK FDMIGIDPSLANAFRRILIAEVPT
Sbjct: 59 YSGAYAALGVDNSVRLDSFCRNFKVEVKKLTDDDIEFDMIGIDPSLANAFRRILIAEVPT 118
Query: 184 IAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEYM-SENDVPNEKNTVVFKLHARC 360
+AIE+V IANNTSIIQDEVL+HRLGLIPI DP LFEY + NEKNT+VFKLH RC
Sbjct: 119 MAIERVYIANNTSIIQDEVLSHRLGLIPINADPTLFEYPDNAGGENNEKNTIVFKLHVRC 178
Query: 361 KKGTERLRVLPCELQWLPNGSELTSN 438
+KG R+ V EL+WLPNGS+L ++
Sbjct: 179 EKGQPRIIVKSDELKWLPNGSDLIAD 204
Score = 52.0 bits (123), Expect(2) = 4e-53
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +2
Query: 431 LATESQASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
L + N+ +KPKT+TSFSCSQD+ PEFS P+ P DII+
Sbjct: 201 LIADDTKPNAGSKPKTFTSFSCSQDSLPEFSKRPLGPTYPDIIL 244
>ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Glycine max]
Length = 393
Score = 184 bits (468), Expect(2) = 6e-53
Identities = 94/144 (65%), Positives = 109/144 (75%), Gaps = 1/144 (0%)
Frame = +1
Query: 1 QYSGAYASMGVDISARFEQFRNNFKXXXXXXXXXXXXFDMIGIDPSLANAFRRILIAEVP 180
QYSGAYA MGVD S R + F NFK FDMIGIDP++ANAFRRILIAEVP
Sbjct: 63 QYSGAYAIMGVDNSVRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVP 122
Query: 181 TIAIEKVLIANNTSIIQDEVLAHRLGLIPIKVDPRLFEY-MSENDVPNEKNTVVFKLHAR 357
T+AIE+V IANNTS++QDEVL+HRLGLIPI+ DPRLFEY + D NEKNT+VFKLH R
Sbjct: 123 TMAIERVYIANNTSVVQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVR 182
Query: 358 CKKGTERLRVLPCELQWLPNGSEL 429
C+ G R+ V +L+WLPNGSEL
Sbjct: 183 CQVGQPRITVKSDKLKWLPNGSEL 206
Score = 49.3 bits (116), Expect(2) = 6e-53
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +2
Query: 431 LATESQASNSSAKPKTYTSFSCSQDTRPEFSNDPIAPKDADIIV 562
L E N+ +KPKT+TSF+CSQD+ PEFSN+ I +DII+
Sbjct: 206 LPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIIL 249