BLASTX nr result
ID: Atropa21_contig00029046
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00029046
(1235 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002335588.1| predicted protein [Populus trichocarpa] 46 4e-15
ref|XP_002335127.1| predicted protein [Populus trichocarpa] 46 8e-15
gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus] 48 8e-15
gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus] ... 48 8e-15
sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Inclu... 46 1e-14
emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus] 48 2e-14
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu... 48 2e-14
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu... 48 2e-14
ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus... 48 2e-14
gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus] 48 2e-14
gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus] 48 2e-14
gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus] ... 48 2e-14
gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus] 48 2e-14
gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus] 48 2e-14
gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus] 48 2e-14
gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus] ... 48 2e-14
gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus] ... 48 2e-14
gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus] 48 2e-14
sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Inclu... 48 2e-14
gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus] 48 2e-14
>ref|XP_002335588.1| predicted protein [Populus trichocarpa]
Length = 622
Score = 45.8 bits (107), Expect(4) = 4e-15
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = -2
Query: 484 KRGYKRIKCIPLPKD*YELILDADASDR*WGAI-S*RQRD--EIVLKYASKGFRGAELNY 314
K+ K + + P LI++ DASD WG I +Q D E++ YAS F+ AE NY
Sbjct: 477 KKAIKNLPPVHHPGPDEPLIIETDASDNYWGGILKSKQSDGLELICGYASGTFKPAEKNY 536
Query: 313 NKNEKVVSSNKGSYNIY-IWLIKKEFIL*TDN 221
+ NEK + + + + ++LI +F TDN
Sbjct: 537 HSNEKEILALINTIKRFQVFLIPVQFTARTDN 568
Score = 44.7 bits (104), Expect(4) = 4e-15
Identities = 20/55 (36%), Positives = 35/55 (63%)
Frame = -1
Query: 701 GEVELQPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
G+++LQ H + + F+++ +DKKQLQ F G L Y + F ++R+ LQ K++
Sbjct: 404 GKLQLQKHIGENITAFNSKITDKKQLQRFLGILNYISQFCPKVAQIRQPLQAKLK 458
Score = 34.3 bits (77), Expect(4) = 4e-15
Identities = 15/23 (65%), Positives = 21/23 (91%)
Frame = -3
Query: 774 GLVLSKRKAEIGKEKIEYLGLII 706
G++LSK KA++ +EKIE+LGLII
Sbjct: 379 GVILSKPKAQLFREKIEFLGLII 401
Score = 23.5 bits (49), Expect(4) = 4e-15
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS ++ + + GT+N ADFLSR
Sbjct: 595 LSYFDIIFEHVAGTNNVFADFLSR 618
>ref|XP_002335127.1| predicted protein [Populus trichocarpa]
Length = 909
Score = 45.8 bits (107), Expect(4) = 8e-15
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = -2
Query: 484 KRGYKRIKCIPLPKD*YELILDADASDR*WGAI-S*RQRD--EIVLKYASKGFRGAELNY 314
K+ K + + P LI++ DASD WG I +Q D E++ YAS F+ AE NY
Sbjct: 764 KKAIKNLPPVHHPGPDEPLIIETDASDNYWGGILKSKQSDGLELICGYASGTFKPAEKNY 823
Query: 313 NKNEKVVSSNKGSYNIY-IWLIKKEFIL*TDN 221
+ NEK + + + + ++LI +F TDN
Sbjct: 824 HSNEKEILALINTIKRFQVFLIPVQFTARTDN 855
Score = 43.5 bits (101), Expect(4) = 8e-15
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = -1
Query: 701 GEVELQPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
G+++LQ H + + F+++ +D+KQLQ F G L Y + F ++R+ LQ K++
Sbjct: 691 GKLQLQKHIGENITAFNSKITDRKQLQRFLGILNYISQFCPKVAQIRQPLQAKLK 745
Score = 34.3 bits (77), Expect(4) = 8e-15
Identities = 15/23 (65%), Positives = 21/23 (91%)
Frame = -3
Query: 774 GLVLSKRKAEIGKEKIEYLGLII 706
G++LSK KA++ +EKIE+LGLII
Sbjct: 666 GVILSKPKAQLFREKIEFLGLII 688
Score = 23.5 bits (49), Expect(4) = 8e-15
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS ++ + + GT+N ADFLSR
Sbjct: 882 LSYFDIIFEHVAGTNNVFADFLSR 905
>gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 8e-15
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 8e-15
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 8e-15
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 28.5 bits (62), Expect(4) = 8e-15
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR--NSIKS 63
LS+ + ++ IKGT N ADFLSR N +KS
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSREFNRVKS 675
>gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722467|gb|AGT42126.1| reverse transcriptase
[Cauliflower mosaic virus] gi|530722475|gb|AGT42133.1|
reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 8e-15
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 8e-15
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 8e-15
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 28.5 bits (62), Expect(4) = 8e-15
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR--NSIKS 63
LS+ + ++ IKGT N ADFLSR N +KS
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSREFNRVKS 675
>sp|Q00962.1|POL_CAMVN RecName: Full=Enzymatic polyprotein; Includes: RecName:
Full=Aspartic protease; Includes: RecName:
Full=Endonuclease; Includes: RecName: Full=Reverse
transcriptase gi|331571|gb|AAA46358.1| reverse
transcriptase [Cauliflower mosaic virus]
gi|445598|prf||1909346E reverse transcriptase
Length = 680
Score = 46.2 bits (108), Expect(4) = 1e-14
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +Y S F+ AE NY+ N+K
Sbjct: 541 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKET 598
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 599 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 628
Score = 41.2 bits (95), Expect(4) = 1e-14
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I N ++R+ LQ K++
Sbjct: 461 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLK 510
Score = 32.0 bits (71), Expect(4) = 1e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 430 HGIILSKKKAQLFKKKINFLGLEI 453
Score = 26.9 bits (58), Expect(4) = 1e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 650 LSHYSFDVEHIKGTDNHFADFLSR 673
>emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]
Length = 680
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 541 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 598
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 599 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 628
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 461 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 510
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 430 HGIILSKKKAQLFKKKINFLGLEI 453
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 650 LSHYSFDVEHIKGTDNHFADFLSR 673
>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName:
Full=Aspartic protease; Includes: RecName:
Full=Endonuclease; Includes: RecName: Full=Reverse
transcriptase gi|293185|gb|AAA62375.1| reverse
transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 540 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKET 597
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 598 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 627
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 460 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 509
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEI 452
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 649 LSHYSFDVEHIKGTDNHFADFLSR 672
>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName:
Full=Aspartic protease; Includes: RecName:
Full=Endonuclease; Includes: RecName: Full=Reverse
transcriptase
Length = 679
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 540 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKET 597
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 598 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 627
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 460 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 509
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEI 452
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 649 LSHYSFDVEHIKGTDNHFADFLSR 672
>ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus]
gi|130592|sp|P03554.1|POL_CAMVS RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58826|emb|CAA23460.1|
unnamed protein product [Cauliflower mosaic virus]
Length = 679
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 540 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 597
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 598 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 627
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 460 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 509
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEI 452
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 649 LSHYSFDVEHIKGTDNHFADFLSR 672
>gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 540 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 597
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 598 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 627
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 460 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 509
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 429 HGIILSKKKAQLFKKKINFLGLEI 452
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 649 LSHYSFDVEHIKGTDNHFADFLSR 672
>gb|AGT42175.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEDTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSR 668
>gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722499|gb|AGT42154.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSR 668
>gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSR 668
>gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSR 668
>gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEGANTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSR 668
>gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722547|gb|AGT42196.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSR 668
>gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722459|gb|AGT42119.1| reverse transcriptase
[Cauliflower mosaic virus] gi|530722507|gb|AGT42161.1|
reverse transcriptase [Cauliflower mosaic virus]
gi|530722515|gb|AGT42168.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSR 668
>gb|AAA46350.1| ORF5; putative [Cauliflower mosaic virus]
Length = 675
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 536 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 593
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 594 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 623
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 456 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 505
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 425 HGIILSKKKAQLFKKKINFLGLEI 448
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 645 LSHYSFDVEHIKGTDNHFADFLSR 668
>sp|P03556.1|POL_CAMVD RecName: Full=Enzymatic polyprotein; Includes: RecName:
Full=Aspartic protease; Includes: RecName:
Full=Endonuclease; Includes: RecName: Full=Reverse
transcriptase
Length = 674
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 535 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 592
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 593 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 622
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 455 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 504
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 424 HGIILSKKKAQLFKKKINFLGLEI 447
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 644 LSHYSFDVEHIKGTDNHFADFLSR 667
>gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 48.1 bits (113), Expect(4) = 2e-14
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -2
Query: 454 PLPKD*YELILDADASDR*WGA------IS*RQRDEIVLKYASKGFRGAELNYNKNEK-- 299
PLP++ +LI++ DASD WG I+ E++ +YAS F+ AE NY+ N+K
Sbjct: 535 PLPEE--KLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKET 592
Query: 298 --VVSSNKGSYNIYIWLIKKEFIL*TDNT*VKA 206
V+++ K I+L F++ TDNT K+
Sbjct: 593 LAVINTIK---KFSIYLTPVHFLIRTDNTHFKS 622
Score = 38.5 bits (88), Expect(4) = 2e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 686 QPHRAKRVLEFSNEFSDKKQLQCF*GHLKYANNFIKNGPKLRENLQTKIR 537
Q H + + +F + DKKQLQ F G L YA+++I ++R+ LQ K++
Sbjct: 455 QGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLK 504
Score = 32.0 bits (71), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -3
Query: 777 YGLVLSKRKAEIGKEKIEYLGLII 706
+G++LSK+KA++ K+KI +LGL I
Sbjct: 424 HGIILSKKKAQLFKKKINFLGLEI 447
Score = 26.9 bits (58), Expect(4) = 2e-14
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 149 LSNCNL*IQVIKGTHNFHADFLSR 78
LS+ + ++ IKGT N ADFLSR
Sbjct: 644 LSHYSFDVEHIKGTDNHFADFLSR 667