BLASTX nr result
ID: Atropa21_contig00028590
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00028590
(944 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco... 406 e-111
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 398 e-108
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 392 e-106
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 392 e-106
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 392 e-106
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 386 e-105
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 386 e-105
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 384 e-104
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 322 2e-85
emb|CBI21038.3| unnamed protein product [Vitis vinifera] 312 1e-82
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 312 1e-82
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 309 1e-81
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 305 1e-80
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu... 305 1e-80
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe... 305 2e-80
ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha... 303 5e-80
gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidops... 303 6e-80
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 302 1e-79
ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Caps... 301 2e-79
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao] 300 4e-79
>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
6 [Solanum lycopersicum]
Length = 1197
Score = 406 bits (1043), Expect = e-111
Identities = 193/221 (87%), Positives = 208/221 (94%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKE FQSY+S+KILGKLYR+V D +DAEGGES+GLE+VP+DIPYDTNLEIPGYEDFI
Sbjct: 977 DFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKDIPYDTNLEIPGYEDFI 1036
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DDAWN KCSYDGQL+GLLGQYKV GEEEVVTGHIWSMPKYS+KKQGELKERLKH YNMLR
Sbjct: 1037 DDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLR 1096
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFRNVFE MEPDFDLLP DEKNDMYERKA+AWYRVTYHP WV+RSLELQ+PDAVS+ VM
Sbjct: 1097 KEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHWVTRSLELQLPDAVSNGVM 1156
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADYIARIKIR RGMQ DSTKPI+SLGRYLV+KI
Sbjct: 1157 LSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197
>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
tuberosum]
Length = 1198
Score = 398 bits (1023), Expect = e-108
Identities = 190/221 (85%), Positives = 205/221 (92%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKE FQ+Y+S+KILGKLYR+V D +DAEGGES+GLEFVP+DIPYDTN+EI GYEDFI
Sbjct: 978 DFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPKDIPYDTNIEILGYEDFI 1037
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DDAWN KCSYDGQL+GLLGQYKV GEEEVVTGHIWSMPKYS+KKQGELKERLKH YN LR
Sbjct: 1038 DDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLR 1097
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFRNVFE MEPDFD+LP DEKNDMYERKA AWYRVTYHP WV+RSLELQ+PDAVS+ VM
Sbjct: 1098 KEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWVTRSLELQLPDAVSNGVM 1157
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADYIARIKIR RGMQ SDSTKPIN LGRYLV+KI
Sbjct: 1158 LSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 392 bits (1007), Expect = e-106
Identities = 190/221 (85%), Positives = 201/221 (90%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEEFQSYKS+KILGKLYR+VKD DAEG SAGLE VP+DIPYDT LEI G FI
Sbjct: 977 DFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFI 1036
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DDAWN KCSYDGQL+GLLGQYKV EEEVVTGHIWSMPKYS+KKQGELKERLKH YN LR
Sbjct: 1037 DDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLR 1096
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFRNVFE MEPDFDLLPDDEKNDMYERKA AWY+VTYHP WV+RSLELQ+PDAVSSTVM
Sbjct: 1097 KEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQIPDAVSSTVM 1156
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIKIR+RG+ YSDSTKPINSLGRYL DKI
Sbjct: 1157 LSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 392 bits (1006), Expect = e-106
Identities = 189/221 (85%), Positives = 202/221 (91%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEEFQSYKS+KILGKLYR+VKD DAEG SAGLE VP+DIPYDT L IPG FI
Sbjct: 977 DFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLVIPGSTVFI 1036
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DDAWN KCSYDGQL GLLGQYKV EEEVVTGHIWSMPKYS+KKQGELKERLKH YN LR
Sbjct: 1037 DDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLR 1096
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFRNVFE M+PDFDLLPDDEKNDMYERKA AWY+VTY+P WV+RSLELQ+PDA+SSTVM
Sbjct: 1097 KEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAISSTVM 1156
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIKIR+RG+QYSDSTKPINSLGRYLVDKI
Sbjct: 1157 LSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 392 bits (1006), Expect = e-106
Identities = 189/221 (85%), Positives = 201/221 (90%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEEFQSYKS+KILGKLYR+VKD D EG SAGLE VP DIPYD++LEIPG FI
Sbjct: 977 DFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTAFI 1036
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DDAWN KCSYDGQL GLLGQYKV EEEVVTGHIWSMPKYS+KKQGELKERLKH YN LR
Sbjct: 1037 DDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLR 1096
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFRNVFE MEPDFDLLPDDEKNDMYERKA AWY+VTY+P WV+RSLELQ+PDAVSSTVM
Sbjct: 1097 KEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVM 1156
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIKIR+RG+QYSDSTKPINSLGRYLVD I
Sbjct: 1157 LSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 386 bits (992), Expect = e-105
Identities = 187/221 (84%), Positives = 200/221 (90%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEEFQSYKS+KILGKLYR+VKD DAEG SAGLE VP+DIPYD+ LEI G FI
Sbjct: 977 DFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDSTLEILGSTAFI 1036
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DDAWN KCSYDGQL GLLGQYKV EEEVVTGHIWSMPKYS+KKQGELKERLKH YN LR
Sbjct: 1037 DDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLR 1096
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFRNVFE M+PDFDLLPDDEKNDMYERKA AWY+VTYHP WV+RSLELQ+PDAVS+TVM
Sbjct: 1097 KEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLPDAVSNTVM 1156
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIKIR+R +QYSDSTKPINSLGRYLVD I
Sbjct: 1157 LSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 386 bits (991), Expect = e-105
Identities = 186/221 (84%), Positives = 200/221 (90%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEEFQSYKS+KILGKLYR+VKD D EG SAGLE VP DIPYD++LEIPG F+
Sbjct: 977 DFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTVFM 1036
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DAWN KCSYDGQL GLLGQYKV EEEVVTGHIWSMPKYS+KKQGELKERLKH YNMLR
Sbjct: 1037 GDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLR 1096
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFRNVFE M+PDFDLLPDDEKNDMYERKA AWY+VTY+P WV+RSLELQ+PDAVSSTVM
Sbjct: 1097 KEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVM 1156
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARI IR+RG+QYSDSTKPINSLGRYLVD I
Sbjct: 1157 LSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 384 bits (985), Expect = e-104
Identities = 186/221 (84%), Positives = 200/221 (90%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEEFQSYKS+KILGKLYR+VKD DAEG SAGLE VP+DIPYDT LEI G FI
Sbjct: 977 DFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFI 1036
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DDAWN KCSYDGQL+GLLGQYKV EEEVVTG+IWSMPKY++KKQGELKERLKH YN LR
Sbjct: 1037 DDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGELKERLKHAYNTLR 1096
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFRNVFE MEPDFDLLPDDEKNDMYERKA AWY+VTYHP WV+RSLELQ+ DAVS+TVM
Sbjct: 1097 KEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLADAVSNTVM 1156
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIKIR+R +QYSDSTKPINSLGRYLVD I
Sbjct: 1157 LSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 322 bits (824), Expect = 2e-85
Identities = 149/221 (67%), Positives = 183/221 (82%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEE+QSYKSEKILG+LYR++KDA+D + S+ L VP DIPYD++LE+ G D+I
Sbjct: 980 DFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDIPYDSDLEVVGASDYI 1039
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DAW++KCSYDGQL+GLL QYKVK EEEVVTGHIWSMPKYSS+KQGELK+RLKH+YN L+
Sbjct: 1040 SDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLK 1099
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFR +FE M+ +F+ L D EKN +YE+KA AWY+V YHP WV +SLELQ PD ++VM
Sbjct: 1100 KEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLELQDPDGAGTSVM 1159
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIKIR+R DS KP+NSL +YL D++
Sbjct: 1160 LSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200
>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 312 bits (799), Expect = 1e-82
Identities = 149/222 (67%), Positives = 178/222 (80%), Gaps = 1/222 (0%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEEFQ+Y+S KILGK+YR++KDA++ + ES+ F + +P+D +L IPG DFI
Sbjct: 814 DFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFI 873
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
+DAW KCSYDGQL+GLLGQYKVK EEEVVTGH+WSMPKY S+KQGEL ERLKH Y+ L+
Sbjct: 874 NDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLK 933
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAV-SSTV 537
KEFR +FE M DFD L DDEKN +YE+KA AWY+VTYHP WV +SLELQ PD V V
Sbjct: 934 KEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERV 993
Query: 538 MLSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
MLSFAWI ADY+ARIKIR +G DS+KPINSL R+LVD+I
Sbjct: 994 MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1035
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 312 bits (799), Expect = 1e-82
Identities = 149/222 (67%), Positives = 178/222 (80%), Gaps = 1/222 (0%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEEFQ+Y+S KILGK+YR++KDA++ + ES+ F + +P+D +L IPG DFI
Sbjct: 976 DFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFI 1035
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
+DAW KCSYDGQL+GLLGQYKVK EEEVVTGH+WSMPKY S+KQGEL ERLKH Y+ L+
Sbjct: 1036 NDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLK 1095
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAV-SSTV 537
KEFR +FE M DFD L DDEKN +YE+KA AWY+VTYHP WV +SLELQ PD V V
Sbjct: 1096 KEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERV 1155
Query: 538 MLSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
MLSFAWI ADY+ARIKIR +G DS+KPINSL R+LVD+I
Sbjct: 1156 MLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 309 bits (791), Expect = 1e-81
Identities = 149/222 (67%), Positives = 179/222 (80%), Gaps = 1/222 (0%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEG-GESAGLEFVPEDIPYDTNLEIPGYEDF 177
DFMGKEE QSYKS+KILG+LYR++KDA+D + S+ L FV DIPYD +LE+ G DF
Sbjct: 977 DFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDF 1036
Query: 178 IDDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNML 357
I DAW+RKCSYDGQL+GLL QYKVK EEEVVTGH+WSMPK SS+KQG+LKERLKH+YN L
Sbjct: 1037 ISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKHSYNCL 1096
Query: 358 RKEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTV 537
++EFR VFE M+ DF L DDEKN +YERKA AWY+VTYHP W+ +SLELQ D +V
Sbjct: 1097 KREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQDSDGAGISV 1156
Query: 538 MLSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
MLSFAWIAADY+ARIKIR+ + DS KP+NSL +YL D++
Sbjct: 1157 MLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198
>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
sinensis]
Length = 1197
Score = 305 bits (782), Expect = 1e-80
Identities = 145/221 (65%), Positives = 179/221 (80%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKE +QSYKS KILG+LYR+ KDA+D + S+ ++ P DI YDT+LE+P DFI
Sbjct: 977 DFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFI 1036
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DAWN+KCSYDGQL+GLL QYKV EEE+VTGHIWSMPKY+S+KQGELKERLKH+Y+ LR
Sbjct: 1037 ADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALR 1096
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFR VFE M+ D +LL +DEKN ++ERKA AWY+VTYHP+WV +SL+LQ D+ S V+
Sbjct: 1097 KEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVL 1156
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIA DY+ARIKIR R M D++KP+N L RY+ D+I
Sbjct: 1157 LSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197
>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
6 [Gossypium hirsutum]
Length = 1196
Score = 305 bits (782), Expect = 1e-80
Identities = 145/221 (65%), Positives = 174/221 (78%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEEFQSYKS KILG+LYR +KDA+D + ES+ L F DI YD +LEI G D+I
Sbjct: 976 DFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDINYDADLEITGSADYI 1035
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DAW +KCSYDGQL GLL QYKVK EEEVVTG IWSMPKY+SKK G+LKE+L H+Y LR
Sbjct: 1036 TDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKEKLGHSYGSLR 1095
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFR +FE+M+ +F+ L +DEKN +YERKA AWY+VTYHP+WV + LE Q PD VM
Sbjct: 1096 KEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQKPDGDEGVVM 1155
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIK+R++G + D KP+NSL RYL D+I
Sbjct: 1156 LSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196
>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 305 bits (780), Expect = 2e-80
Identities = 142/222 (63%), Positives = 178/222 (80%), Gaps = 1/222 (0%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DF+GKE+ QSYKS KILG+LYR+V+DA+D + S+ L + P DIPYD +LE+PG DF+
Sbjct: 975 DFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDMDLEVPGAADFV 1034
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DAW +KCSYDGQL GL+GQYKVK EEE+VTGH+WS+PK +SKKQGELKERL H+YN L+
Sbjct: 1035 FDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKERLSHSYNALK 1094
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSS-TV 537
KEFR +FE+++ + + L DDEKN + E+KA AWY+VTYHP WV +S LQ PD V
Sbjct: 1095 KEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPLQEPDGPGDVVV 1154
Query: 538 MLSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
MLSFAWIAADY+ARIKI+ G+++ DSTKPINSL RYL D+I
Sbjct: 1155 MLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196
>ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName:
Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative
RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA
polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase
6 [Arabidopsis thaliana]
Length = 1196
Score = 303 bits (777), Expect = 5e-80
Identities = 143/221 (64%), Positives = 173/221 (78%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKE++Q+YKS KILG+LYRRVK+ +D + S+ P IPYD LEIPG+ED I
Sbjct: 976 DFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLI 1035
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
+AW KC YDGQL GLLGQYKV+ EEE+VTGHIWSMPKY+SKKQGELKERLKH+YN L+
Sbjct: 1036 PEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLK 1095
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFR VFE PD + L ++EKN +YE+KA AWY VTYHP+WV +SLELQ PD S M
Sbjct: 1096 KEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAM 1155
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIKIR+R M DS KP++SL ++L ++
Sbjct: 1156 LSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196
>gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 303 bits (776), Expect = 6e-80
Identities = 143/221 (64%), Positives = 173/221 (78%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKE++Q+YKS KILG+LYR VK+ +D + S+ P IPYD LEIPG+ED I
Sbjct: 976 DFMGKEDYQTYKSNKILGRLYRPVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLI 1035
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
+AW KCSYDGQL GLLGQYKV+ EEE+VTGHIWSMPKY+SKKQGELKERLKH+YN L+
Sbjct: 1036 PEAWGHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLK 1095
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFR VFE PD + L ++EKN +YE+KA AWY VTYHP+WV +SLELQ PD S M
Sbjct: 1096 KEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAM 1155
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIKIR+R M DS KP++SL ++L ++
Sbjct: 1156 LSFAWIAADYLARIKIRSREMGSIDSAKPVDSLAKFLAQRL 1196
>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
Length = 1194
Score = 302 bits (773), Expect = 1e-79
Identities = 141/222 (63%), Positives = 180/222 (81%), Gaps = 1/222 (0%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEE+QSYKS KI+G+LYR++KD + + S+ L V +IP+DT+LE+PG DF+
Sbjct: 973 DFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFDTDLEVPGAADFL 1032
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DDAW +KCSYDGQL GL+ QYKVK EEEVVTG IWSMPK++S+K+G+LKERLKH+Y LR
Sbjct: 1033 DDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDLKERLKHSYTGLR 1092
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLEL-QMPDAVSSTV 537
KEFR VFE ++ DF+ L DDEKN +YE++A AWY++TYHP WV +S ++ + V + V
Sbjct: 1093 KEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKWVKKSQDMHDQLEEVKNVV 1152
Query: 538 MLSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
MLSFAWIAADY+ARIKIR RG+ +DSTKPINSLG+YL D+I
Sbjct: 1153 MLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194
>ref|XP_006290518.1| hypothetical protein CARUB_v10016597mg [Capsella rubella]
gi|482559225|gb|EOA23416.1| hypothetical protein
CARUB_v10016597mg [Capsella rubella]
Length = 1197
Score = 301 bits (772), Expect = 2e-79
Identities = 144/222 (64%), Positives = 177/222 (79%), Gaps = 1/222 (0%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKE++Q+YKS KILG+LYRRVK+ +D + S+ DIPYDT+LEIPG+ D I
Sbjct: 976 DFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEENPDLSDIPYDTDLEIPGFADLI 1035
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
+AW KCSYDGQL GLLGQYKV+ EEE+VTGHIWSMPKY+SKKQG+LKERLKH+YN L+
Sbjct: 1036 PEAWRHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGDLKERLKHSYNSLK 1095
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSS-TV 537
KEFR VFE PD + L D+EKN +YE+KA AWY VTYHP WV++SLELQ PD S+ V
Sbjct: 1096 KEFRKVFEETIPDHENLSDEEKNILYEKKASAWYHVTYHPKWVTKSLELQDPDESSTHAV 1155
Query: 538 MLSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
MLSFAWIAADY+ARIKIR+R + DS KP++SL ++L ++
Sbjct: 1156 MLSFAWIAADYLARIKIRSREIGNMDSAKPVDSLAKFLAQRL 1197
>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
Length = 1197
Score = 300 bits (769), Expect = 4e-79
Identities = 141/221 (63%), Positives = 173/221 (78%)
Frame = +1
Query: 1 DFMGKEEFQSYKSEKILGKLYRRVKDAFDAEGGESAGLEFVPEDIPYDTNLEIPGYEDFI 180
DFMGKEE+QSYKS KILG+LYR +KD +D + ES+ + DI YDT+LE+ G D+I
Sbjct: 977 DFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDSPDINYDTDLEVTGSADYI 1036
Query: 181 DDAWNRKCSYDGQLSGLLGQYKVKGEEEVVTGHIWSMPKYSSKKQGELKERLKHTYNMLR 360
DDAW +KCSYD QL GLLGQYKVK EEEVVTGHIWSMPKY+S+K G+LKE+L H+Y LR
Sbjct: 1037 DDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLKEKLGHSYGALR 1096
Query: 361 KEFRNVFEHMEPDFDLLPDDEKNDMYERKAYAWYRVTYHPDWVSRSLELQMPDAVSSTVM 540
KEFR +FE M+ + + L +DE+N++YERKA AWY+VTYHP WV + LELQ D VM
Sbjct: 1097 KEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKWVEKKLELQKSDGADPVVM 1156
Query: 541 LSFAWIAADYIARIKIRNRGMQYSDSTKPINSLGRYLVDKI 663
LSFAWIAADY+ARIKIR++G D +KP+NSL +YL DKI
Sbjct: 1157 LSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197