BLASTX nr result
ID: Atropa21_contig00028169
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00028169
(585 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 113 3e-23
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 110 2e-22
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 109 5e-22
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 103 3e-20
gb|AAF79812.1|AC020646_35 T32E20.6 [Arabidopsis thaliana] 101 2e-19
ref|XP_006598659.1| PREDICTED: uncharacterized protein LOC102659... 98 1e-18
ref|XP_006574202.1| PREDICTED: uncharacterized protein LOC102669... 98 1e-18
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 98 1e-18
ref|XP_004247002.1| PREDICTED: uncharacterized protein LOC101265... 98 2e-18
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 97 2e-18
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 97 4e-18
emb|CAA73821.1| reverse transcriptase [Beta lomatogona] 84 5e-18
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 96 5e-18
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 96 5e-18
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 95 1e-17
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 94 3e-17
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 93 6e-17
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 92 8e-17
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 92 1e-16
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 91 2e-16
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 113 bits (283), Expect = 3e-23
Identities = 66/181 (36%), Positives = 106/181 (58%), Gaps = 16/181 (8%)
Frame = +3
Query: 84 RNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFVTGRM 263
+N+L EV G+EI+K L+A+ +K G DGY ++FK TW++T D IAA++ FFV G +
Sbjct: 743 QNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFL 802
Query: 264 LRNVKNAVLTL*PVVTQC--MK*FQRCYLTD*GWYCLLS--------------LLKNQGE 395
+ + +L L P + MK ++ + Y ++S +L+NQ
Sbjct: 803 PKGLNATILALIPKKDEAIEMKDYRPISCCN-VLYKVISKILANRLKLLLPSFILQNQSA 861
Query: 396 FVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNFPQR 575
FV R +M NVL+ +LV+ Y++++ T +KID+ KA+DSV+W+F+ L ALNFP+
Sbjct: 862 FVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPET 921
Query: 576 F 578
F
Sbjct: 922 F 922
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 110 bits (276), Expect = 2e-22
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Frame = +3
Query: 3 LLGTTKKDREHVCSGLVRRGPVVSEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGI 182
LLGT V VR G +S + + L EV EI +AL I DK GLDG+
Sbjct: 404 LLGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNA 463
Query: 183 QYFKDTWAITCNDHIAAVKKFFVTGRMLRNVKNAVLTL*PVVTQC--MK*FQRCYLTD*G 356
+FK +W + A +++FF RM R + V+TL P V +K F+
Sbjct: 464 YFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVI 523
Query: 357 WYCLLSLLKN-------------QGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKI 497
+ + +L N Q F+ GR I N+L+ +L+R Y RK+ + ++K+
Sbjct: 524 YKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKV 583
Query: 498 DLKKAYDSVEWRFVEEMLHALNFPQRFI 581
D++KAYDSVEW F+E +L+ FP RF+
Sbjct: 584 DIRKAYDSVEWSFLETLLYEFGFPSRFV 611
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 109 bits (273), Expect = 5e-22
Identities = 64/208 (30%), Positives = 112/208 (53%), Gaps = 15/208 (7%)
Frame = +3
Query: 3 LLGTTKKDREHVCSGLVRRGPVVSEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGI 182
L+G++ V +V+RGP++S+ ++LL ++ E+K L+++ K G+DGY +
Sbjct: 87 LMGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAVEVKNVLFSMDSSKAPGIDGYNV 146
Query: 183 QYFKDTWAITCNDHIAAVKKFFVTGRMLRNVKNAVLTL*P--VVTQCMK*FQRCYLTD*G 356
+FK +W I + I A+ FF TG M + + +TL P V +K F+
Sbjct: 147 HFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVI 206
Query: 357 WYCLLSLL-------------KNQGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKI 497
+ + +L +NQ FV GR I N+++ +LV+ Y+RK + ++KI
Sbjct: 207 YKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKI 266
Query: 498 DLKKAYDSVEWRFVEEMLHALNFPQRFI 581
DL+KAY+SVEW F++ ++ L F +F+
Sbjct: 267 DLQKAYNSVEWPFIKHLMLELGFSYKFV 294
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 103 bits (257), Expect = 3e-20
Identities = 62/188 (32%), Positives = 103/188 (54%), Gaps = 19/188 (10%)
Frame = +3
Query: 72 SEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFV 251
S +++L EV +E +K L+A+ +K G DGY ++FK TW+IT D IAA+K FF+
Sbjct: 15 SATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFI 74
Query: 252 TGRMLRNVKNAVLTL*P-----VVTQCMK*FQRCYLTD*GWYCLLS-------------- 374
G + + + +L L P + + + C + Y ++S
Sbjct: 75 KGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVI----YKVISKIIANRLKVMLPTF 130
Query: 375 LLKNQGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLH 554
+L+NQ FV R ++ NVL+ +LV+ Y++ + + +KID+ KA+DSV+W+F+ L
Sbjct: 131 ILQNQSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLE 190
Query: 555 ALNFPQRF 578
ALNFP+ F
Sbjct: 191 ALNFPENF 198
>gb|AAF79812.1|AC020646_35 T32E20.6 [Arabidopsis thaliana]
Length = 458
Score = 101 bits (251), Expect = 2e-19
Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 15/185 (8%)
Frame = +3
Query: 72 SEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFV 251
SEE + + V +EIK+ L+A+ DK G D Y ++++K TW I + I A+K FFV
Sbjct: 183 SEEEKTEMTRSVTEEEIKRVLFAMPKDKSLGPDSYTMEFYKSTWDIIGKEFILAIKSFFV 242
Query: 252 TGRMLRNVKNAVLTL*P--VVTQCMK*FQRCYLTD*GWYCLLSLLKN------------- 386
G + + + + +L L P T MK ++ + + +L ++ N
Sbjct: 243 KGFLPKAINSTILALIPKKATTNEMKDYRPISCCNVIFKVILKIIANPLKRVLPNFVVGN 302
Query: 387 QGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNF 566
Q FV R ++ NVL+ +LV+ Y++++ + IKID+ KA+DSV+W + ++L A+ F
Sbjct: 303 QSAFVQDRLLIENVLLATELVKDYHKESVSTGCAIKIDISKAFDSVQWSVLRKVLEAMKF 362
Query: 567 PQRFI 581
P FI
Sbjct: 363 PLFFI 367
>ref|XP_006598659.1| PREDICTED: uncharacterized protein LOC102659749 [Glycine max]
Length = 686
Score = 98.2 bits (243), Expect = 1e-18
Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 2/195 (1%)
Frame = +3
Query: 3 LLGTTKKDREHVCSGLVRRGPVVSEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGI 182
L+G+T + H+ +R G ++ + L V EI KAL I K G+DGYG
Sbjct: 157 LMGSTASNLRHIDIQAMRDGKQITFDQGAFLTASVTEVEIVKALQGIGDLKAPGIDGYGA 216
Query: 183 QYFKDTWAITCNDHIAAVKKFFVTGRMLRNVKNAVLTL*P--VVTQCMK*FQRCYLTD*G 356
++FK++W I D IAA+ +FF G +L+ + ++TL P + + +K ++
Sbjct: 217 KFFKNSWHIVKKDFIAAMNEFFEKGTLLKVFNSTLVTLIPKSITAKTVKDYRPI------ 270
Query: 357 WYCLLSLLKNQGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRF 536
FV G+ I ++L+ +L++ Y RK T +++IDL+KAYD V+W
Sbjct: 271 -----------AAFVPGQVIHNHILLATELMKGYTRKGGTPRCIMQIDLQKAYDMVDWDA 319
Query: 537 VEEMLHALNFPQRFI 581
+E +L P++FI
Sbjct: 320 LEGVLTEFGLPKKFI 334
>ref|XP_006574202.1| PREDICTED: uncharacterized protein LOC102669058 [Glycine max]
Length = 234
Score = 98.2 bits (243), Expect = 1e-18
Identities = 54/173 (31%), Positives = 91/173 (52%)
Frame = +3
Query: 48 LVRRGPVVSEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHI 227
+ RGP V + L QE+ + + +K G DG+ + +FK W I +D
Sbjct: 71 ICNRGPKVPTDCFAALLCPTFKQEVWNVISVMDNNKAPGPDGFNVLFFKKAWNIIDDDIF 130
Query: 228 AAVKKFFVTGRMLRNVKNAVLTL*PVVTQCMK*FQRCYLTD*GWYCLLSLLKNQGEFVAG 407
AAV +FF TG++L+ + +A++ L P Q + CL + + Q F+
Sbjct: 131 AAVNEFFTTGKILKQLNHAIIALIPKHDQASQP-----------QCLTIIGETQTAFIKN 179
Query: 408 RSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNF 566
R +M N+ + ++++R Y RK ++ L+KIDL KAYDS+ W F++ ML ++ F
Sbjct: 180 RKMMDNIFLVQEILRKYARKRSSPRCLLKIDLHKAYDSISWEFLDWMLKSIGF 232
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 98.2 bits (243), Expect = 1e-18
Identities = 57/185 (30%), Positives = 100/185 (54%), Gaps = 15/185 (8%)
Frame = +3
Query: 72 SEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFV 251
SE+ LL V G+EIKK ++++ DK G DGY +++K +W I ++ I A++ FF
Sbjct: 163 SEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFA 222
Query: 252 TGRMLRNVKNAVLTL*PVVTQC--MK*FQRCYLTD*GWYCLLSLLK-------------N 386
G + + V + +L L P + +K ++ + + + +L N
Sbjct: 223 KGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGN 282
Query: 387 QGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNF 566
Q FV R ++ NVL+ +LV+ Y++ + + +KID+ KA+DS++W F+ +L A+NF
Sbjct: 283 QSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNF 342
Query: 567 PQRFI 581
P FI
Sbjct: 343 PGEFI 347
>ref|XP_004247002.1| PREDICTED: uncharacterized protein LOC101265856 [Solanum
lycopersicum]
Length = 149
Score = 97.8 bits (242), Expect = 2e-18
Identities = 57/171 (33%), Positives = 88/171 (51%)
Frame = +3
Query: 51 VRRGPVVSEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIA 230
++RGP ++++ R L V QEI L +I DK G+DGY +FK TW I D I
Sbjct: 1 MKRGPTLTKQQRVQLCAAVTKQEIYDGLKSIGNDKAPGIDGYNAFFFKHTWQIIKRDIIE 60
Query: 231 AVKKFFVTGRMLRNVKNAVLTL*PVVTQCMK*FQRCYLTD*GWYCLLSLLKNQGEFVAGR 410
AV+ FF TG++ + +++L P V F+ GR
Sbjct: 61 AVQCFFTTGKLYKAFNCTLVSLIPKVQN----------------------PKTAGFIPGR 98
Query: 411 SIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALN 563
I N+++ +LV Y RK+ ++KIDL+K+YDSVEW F+E+++ + N
Sbjct: 99 KISDNIVLAHELVEAYTRKHIYPRCMLKIDLQKSYDSVEWGFLEQVVLSKN 149
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 97.4 bits (241), Expect = 2e-18
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 19/189 (10%)
Frame = +3
Query: 72 SEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFV 251
S + + L + Q+IK A ++ +K G DG+ +++FK+TW++ + AV +FF
Sbjct: 385 SHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFT 444
Query: 252 TGRMLRNVKNAVLTL*PVVTQC--MK*FQRCYLTD*G---------------WYCLLSLL 380
+ +L+ L L P +T M F+ D G CLLS +
Sbjct: 445 SSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQV 504
Query: 381 KN--QGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLH 554
+ Q F+ GR + NVL+ +LV+ YNR+N ++K+DL+KA+DS+ W F+ L
Sbjct: 505 ISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALK 564
Query: 555 ALNFPQRFI 581
A+ P RF+
Sbjct: 565 AIGIPDRFV 573
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 96.7 bits (239), Expect = 4e-18
Identities = 54/185 (29%), Positives = 100/185 (54%), Gaps = 16/185 (8%)
Frame = +3
Query: 72 SEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFV 251
S+ + +L N V+ +EI K ++++ DK G DGY +++K W I + I A++ FF
Sbjct: 330 SDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFA 389
Query: 252 TGRMLRNVKNAVLTL*PVVTQC--MK*FQRCYLTD*GWYCLLS--------------LLK 383
G + + + + +L L P + MK ++ + Y ++S ++
Sbjct: 390 KGFLPKGINSTILALIPKKKEAKEMKDYRPISCCN-VLYKVISKIIANRLKLVLPKFIVG 448
Query: 384 NQGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALN 563
NQ FV R ++ NVL+ ++V+ Y++ + + +KID+ KA+DSV+W+F+ +L A+N
Sbjct: 449 NQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMN 508
Query: 564 FPQRF 578
FP F
Sbjct: 509 FPPEF 513
>emb|CAA73821.1| reverse transcriptase [Beta lomatogona]
Length = 143
Score = 84.0 bits (206), Expect(2) = 5e-18
Identities = 36/66 (54%), Positives = 52/66 (78%)
Frame = +3
Query: 381 KNQGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHAL 560
+NQG FV+ RSI++NVLIC+ L+++YN+ A S L+K+DL+KAYD++EW FVEE++ L
Sbjct: 40 QNQGAFVSRRSILHNVLICQGLIKMYNQGKAPPSCLMKLDLRKAYDTIEWAFVEEIMTEL 99
Query: 561 NFPQRF 578
FP F
Sbjct: 100 GFPSNF 105
Score = 33.1 bits (74), Expect(2) = 5e-18
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 296 IACCNTMYEVISKVLFNRLRMVLPTIIAKKPRGICSR 406
IA C+T+Y+ IS +L +RL VLP II + SR
Sbjct: 12 IAYCSTIYKYISMLLCDRLSKVLPDIIPQNQGAFVSR 48
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 96.3 bits (238), Expect = 5e-18
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 15/179 (8%)
Frame = +3
Query: 90 LLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFVTGRMLR 269
+L V+ +EIKK L+++ DK G DG+ ++FK++W I + I A++ FF G + +
Sbjct: 1 MLTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPK 60
Query: 270 NVKNAVLTL*P--VVTQCMK*FQRCYLTD*GWYCLLSLLK-------------NQGEFVA 404
V + +L L P + ++ MK ++ + + + +L NQ FV
Sbjct: 61 GVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVK 120
Query: 405 GRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNFPQRFI 581
R ++ NVL+ DLV+ Y++ + ++ IKID+ KA DSV+W F+ L A++FP+ FI
Sbjct: 121 DRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFI 179
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 96.3 bits (238), Expect = 5e-18
Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 15/184 (8%)
Frame = +3
Query: 75 EEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFVT 254
E R LL+ EV+ +IK +A+ +K G DGY ++FK TW+I IAAV++FF +
Sbjct: 436 ENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRS 495
Query: 255 GRMLRNVKNAVLTL*PVVTQCMK*FQ-RCYLTD*GWYCLLSLL--------------KNQ 389
GR+L + +T+ P + + R Y ++S L +Q
Sbjct: 496 GRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQ 555
Query: 390 GEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNFP 569
FV GR + NVL+ +LV+ + + N + ++K+DL+KA+DSV W F+ E L A N P
Sbjct: 556 SAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAP 615
Query: 570 QRFI 581
RF+
Sbjct: 616 PRFV 619
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 95.1 bits (235), Expect = 1e-17
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 15/185 (8%)
Frame = +3
Query: 72 SEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFV 251
S +NLL E+ E+ K ++I +K G DGY +++F++TW++ + A+K FF
Sbjct: 708 SLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFT 767
Query: 252 TGRMLRNVKNAVLTL*PVVTQC--MK*FQRCYLTD*GWYCLLSLLKN------------- 386
G + + + + +L L P T MK ++ + + + LL N
Sbjct: 768 YGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPN 827
Query: 387 QGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNF 566
Q F++ R +M N+L+ +LV+ Y++ + +KIDL KA+DSV+W F+ L AL+
Sbjct: 828 QSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDI 887
Query: 567 PQRFI 581
P++FI
Sbjct: 888 PEKFI 892
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 94.0 bits (232), Expect = 3e-17
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 15/209 (7%)
Frame = +3
Query: 3 LLGTTKKDREHVCSGLVRRGPVVSEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGI 182
LLGT+ E + +VR G +S L + QEI +AL I K GLDG+
Sbjct: 407 LLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNS 466
Query: 183 QYFKDTWAITCNDHIAAVKKFFVTGRMLRNVKNAVLTL*PVVTQCM--K*FQRCYLTD*G 356
+FK +W + + + FF G M + + +TL P + + K ++
Sbjct: 467 VFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTL 526
Query: 357 WYCLLSLLKN-------------QGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKI 497
+ + +L Q F+ R I N+L+ +L+R YNR++ + +IK+
Sbjct: 527 YKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKV 586
Query: 498 DLKKAYDSVEWRFVEEMLHALNFPQRFIK 584
D++KAYDSVEW F+E ML L FP FI+
Sbjct: 587 DIRKAYDSVEWVFLESMLKELGFPSMFIR 615
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 92.8 bits (229), Expect = 6e-17
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 15/178 (8%)
Frame = +3
Query: 93 LQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFVTGRMLRN 272
L++ + ++I+ AL+++ +K G DG+ ++F D+W+I + A+K+FF +G +L+
Sbjct: 443 LESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQ 502
Query: 273 VKNAVLTL*PVVTQ--CMK*FQRCYLTD*GWYCLLSLLKN-------------QGEFVAG 407
+ L P + C F+ + + + LL + Q F+ G
Sbjct: 503 WNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPG 562
Query: 408 RSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNFPQRFI 581
RS+ NVL+ DLV YN N + ++K+DLKKA+DSV W FV L AL P++FI
Sbjct: 563 RSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFI 620
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 92.4 bits (228), Expect = 8e-17
Identities = 55/185 (29%), Positives = 97/185 (52%), Gaps = 15/185 (8%)
Frame = +3
Query: 72 SEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFV 251
S +++L V+ +EI+ AL+++ DK G DGY +++K W I + + AVK FF
Sbjct: 857 SPAEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFE 916
Query: 252 TGRMLRNVKNAVLTL*PVVTQC--MK*FQRCYLTD*GWYCLLSLLK-------------N 386
G + + V +L L P + MK ++ + + + ++ N
Sbjct: 917 KGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGN 976
Query: 387 QGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNF 566
Q FV R ++ N+L+ +LV+ Y++ + IKID+ KA+DSV+W F++ +L AL+F
Sbjct: 977 QSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDF 1036
Query: 567 PQRFI 581
P F+
Sbjct: 1037 PPEFV 1041
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 92.0 bits (227), Expect = 1e-16
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Frame = +3
Query: 93 LQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFVTGRMLRN 272
L + ++IK A +++ +K G DG+ ++F W I + A+ +FF +G++L+
Sbjct: 340 LDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQ 399
Query: 273 VKNAVLTL*PVVTQC--MK*FQRCYLTD*GWYCLLSLLKN-------------QGEFVAG 407
L L P +T M F+ + + + LL + Q F+ G
Sbjct: 400 WNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPG 459
Query: 408 RSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNFPQRF 578
R + NVL+ +LV YN+KN S ++K+DL+KA+DSV W F+ L ALN P++F
Sbjct: 460 RLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKF 516
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 90.9 bits (224), Expect = 2e-16
Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 15/185 (8%)
Frame = +3
Query: 72 SEEHRNLLQNEVNGQEIKKALWAIVGDKPQGLDGYGIQYFKDTWAITCNDHIAAVKKFFV 251
S+ + L V +EI+K L+ + DK G DGY ++FK TW I ++ AV+ FF
Sbjct: 442 SDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFT 501
Query: 252 TGRMLRNVKNAVLTL*PVVTQC--MK*FQRCYLTD*GWYCLLSLLK-------------N 386
G + + + + +L L P T+ MK ++ + + + ++ N
Sbjct: 502 KGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGN 561
Query: 387 QGEFVAGRSIMYNVLICEDLVRLYNRKNATKSFLIKIDLKKAYDSVEWRFVEEMLHALNF 566
Q FV R ++ N+L+ +LV+ Y++ + IKID+ KA+DSV+W F+ + L F
Sbjct: 562 QSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGF 621
Query: 567 PQRFI 581
P+ FI
Sbjct: 622 PREFI 626