BLASTX nr result
ID: Atropa21_contig00028032
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00028032
(1834 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 243 e-125
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 241 e-124
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 239 e-124
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 239 e-124
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 247 e-123
gb|AFB73912.1| polyprotein [Citrus sinensis] 236 e-123
gb|AFB73911.1| polyprotein [Citrus sinensis] 236 e-122
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 246 e-122
emb|CAN69396.1| hypothetical protein VITISV_021034 [Vitis vinifera] 233 e-121
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 235 e-121
dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Gl... 233 e-120
emb|CAN64073.1| hypothetical protein VITISV_038270 [Vitis vinifera] 230 e-120
emb|CDF77009.1| hypothetical transposable element-related protei... 232 e-119
emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera] 234 e-119
emb|CAN78154.1| hypothetical protein VITISV_032622 [Vitis vinifera] 233 e-119
gb|AAD12997.1| gag-pol polyprotein [Zea mays] 231 e-116
emb|CAN74511.1| hypothetical protein VITISV_011891 [Vitis vinifera] 224 e-116
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 225 e-116
gb|ABF96216.1| retrotransposon protein, putative, Ty1-copia subc... 228 e-115
gb|AAP46197.1| putative gag-pol polyprotein [Oryza sativa Japoni... 228 e-115
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 243 bits (619), Expect(2) = e-125
Identities = 126/273 (46%), Positives = 182/273 (66%), Gaps = 3/273 (1%)
Frame = +3
Query: 870 RLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAI 1049
R + LSQ+ Y++KVL FNMQDCKPI+TP+ + LS M P E+ +M +VPYA A+
Sbjct: 1033 RKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAV 1092
Query: 1050 GCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQF 1220
G LM ICTRPDI AV +VSRF +DPG+EHW AVKRI+RY+KGT ++C+ G++L
Sbjct: 1093 GSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTV 1152
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
+GY D+D D D+RKST+GYVF L GA+S SK Q+ +ALST EAE + + A +EA+
Sbjct: 1153 RGYVDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAI 1212
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W + + LG + E +T+ CDSQ+ + ++P +H +TK+I ++Y+FVR++V V
Sbjct: 1213 WMQRLMEELG---HKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSV 1269
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
+++ I T+ +A +TKPI + S GL
Sbjct: 1270 DMQKIHTNDNLADVMTKPINADKFVWCRSSYGL 1302
Score = 234 bits (596), Expect(2) = e-125
Identities = 118/232 (50%), Positives = 160/232 (68%), Gaps = 4/232 (1%)
Frame = +2
Query: 149 DEEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRK 319
+E EP +EAL +W+ A+ E+M++ N+ WELV+LP GRKAI NKWV KIKR
Sbjct: 784 EEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKRD 843
Query: 320 AEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTA 499
D +ERY+ARLV KGY Q GID+ EIFS VVR T ++++L + A LD+ L Q+DVKTA
Sbjct: 844 GNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTA 903
Query: 500 FLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMI 679
FL+GELEE+IYM QP F ++G+E+ VCR +S+YG KQ+ R WY F + IIS + +
Sbjct: 904 FLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRL 963
Query: 680 HEDHCVYIKR-SKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
DHC Y KR + F+IL LYVDDIL+ + + V+E+K L+ F+MKD+
Sbjct: 964 SSDHCTYYKRFDGNDFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDL 1015
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 241 bits (615), Expect(2) = e-124
Identities = 125/269 (46%), Positives = 180/269 (66%), Gaps = 3/269 (1%)
Frame = +3
Query: 882 LSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAIGCLM 1061
LSQ+ Y++KVL FNMQDCKPI+TP+ + LS M P E+ +M +VPYA A+G LM
Sbjct: 1037 LSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLM 1096
Query: 1062 ---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQFKGYT 1232
ICTRPDI AV +VSRF +DPG+EHW AVKRI+RY+KGT ++C+ G++L +GY
Sbjct: 1097 YAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTVRGYV 1156
Query: 1233 DAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAVWFKH 1412
D+D D D+RKST+GYVF L GA+S SK Q+ +ALST EAE + + A +EA+W +
Sbjct: 1157 DSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQR 1216
Query: 1413 FLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREVNVKY 1592
+ LG + E +T+ CDSQ+ + ++P +H +TK+I ++Y+FVR++V V+++
Sbjct: 1217 LMEELG---HKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQK 1273
Query: 1593 ISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
I T+ +A +TKPI + S GL
Sbjct: 1274 IHTNDNLADVMTKPINADKFVWCRSSYGL 1302
Score = 234 bits (598), Expect(2) = e-124
Identities = 118/232 (50%), Positives = 161/232 (69%), Gaps = 4/232 (1%)
Frame = +2
Query: 149 DEEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRK 319
+E EP +EAL +W+ AM E+M++ N+ WELV+LP GRKAI NKWV KIKR
Sbjct: 784 EEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRD 843
Query: 320 AEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTA 499
D +ERY+ARLV KGY Q GID+ EIFS VVR T ++++L + A LD+ L Q+DVKTA
Sbjct: 844 GNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTA 903
Query: 500 FLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMI 679
FL+GELEE+IYM QP F ++G+E+ VCR +S+YG KQ+ R WY F + IIS ++ +
Sbjct: 904 FLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRL 963
Query: 680 HEDHCVYIKR-SKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
DHC Y KR + F+IL LYVDD+L+ + + V+E+K L+ F+MKD+
Sbjct: 964 SSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDL 1015
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 239 bits (611), Expect(2) = e-124
Identities = 122/259 (47%), Positives = 178/259 (68%), Gaps = 3/259 (1%)
Frame = +3
Query: 870 RLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAI 1049
R + LSQ+ Y++KVL FNMQDCKPI+TP+ + LS M P E+ +M +VPYA A+
Sbjct: 1033 RKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAV 1092
Query: 1050 GCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQF 1220
G LM ICTRPDI AV +VSRF +DPG+EHW AVKRI+RY+KGT ++C+ G++L
Sbjct: 1093 GSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTV 1152
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
+GY D+D D D+RKST+GYVF L GA+S SK Q+ +ALST EAE + + A +EA+
Sbjct: 1153 RGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAI 1212
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W + + LG + E +T+ CDSQ+ + ++P +H +TK+I ++Y+FVR++V V
Sbjct: 1213 WMQRLMEELG---HKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSV 1269
Query: 1581 NVKYISTHQVIAHSLTKPI 1637
+++ I T+ +A ++TK I
Sbjct: 1270 DMQKIHTNDNLADAMTKSI 1288
Score = 234 bits (598), Expect(2) = e-124
Identities = 118/232 (50%), Positives = 161/232 (69%), Gaps = 4/232 (1%)
Frame = +2
Query: 149 DEEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRK 319
+E EP +EAL +W+ AM E+M++ N+ WELV+LP GRKAI NKWV KIKR
Sbjct: 784 EEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRD 843
Query: 320 AEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTA 499
D +ERY+ARLV KGY Q GID+ EIFS VVR T ++++L + A LD+ L Q+DVKTA
Sbjct: 844 GNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTA 903
Query: 500 FLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMI 679
FL+GELEE+IYM QP F ++G+E+ VCR +S+YG KQ+ R WY F + IIS ++ +
Sbjct: 904 FLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRL 963
Query: 680 HEDHCVYIKR-SKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
DHC Y KR + F+IL LYVDD+L+ + + V+E+K L+ F+MKD+
Sbjct: 964 SSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDL 1015
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 239 bits (611), Expect(2) = e-124
Identities = 123/259 (47%), Positives = 177/259 (68%), Gaps = 3/259 (1%)
Frame = +3
Query: 870 RLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAI 1049
R + LSQ+ Y++KVL FNMQDCKPI+TP+ + LS M P E+ +M +VPYA A+
Sbjct: 1033 RKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAV 1092
Query: 1050 GCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQF 1220
G LM ICTRPDI AV +VSRF +DPG+EHW AVKRI+RY+KGT ++C+ G++L
Sbjct: 1093 GSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSELTV 1152
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GY D+D D D+RKST+GYVF L GA+S SK Q+ +ALST EAE + + A +EA+
Sbjct: 1153 WGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAI 1212
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W + + LG + E +T+ CDSQ+ + ++P +H +TK+I ++Y+FVR++V V
Sbjct: 1213 WMQRLMEELG---HKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSV 1269
Query: 1581 NVKYISTHQVIAHSLTKPI 1637
+++ I T+ +A +TKPI
Sbjct: 1270 DMQKIHTNDNLADVMTKPI 1288
Score = 234 bits (597), Expect(2) = e-124
Identities = 118/232 (50%), Positives = 160/232 (68%), Gaps = 4/232 (1%)
Frame = +2
Query: 149 DEEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRK 319
+E EP +EAL +W+ AM E+M++ N+ WELV+LP GRKAI NKWV KIKR
Sbjct: 784 EEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRD 843
Query: 320 AEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTA 499
D +ERY+ARLV KGY Q GID+ EIFS VVR T ++++L + A LD+ L Q+DVKTA
Sbjct: 844 GNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTA 903
Query: 500 FLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMI 679
FL+GELEE+IYM QP F ++G+E+ VCR +S+YG KQ+ R WY F + IIS + +
Sbjct: 904 FLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRL 963
Query: 680 HEDHCVYIKR-SKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
DHC Y KR + F+IL LYVDD+L+ + + V+E+K L+ F+MKD+
Sbjct: 964 SSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDL 1015
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 247 bits (630), Expect(2) = e-123
Identities = 129/273 (47%), Positives = 184/273 (67%), Gaps = 3/273 (1%)
Frame = +3
Query: 870 RLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAI 1049
R L LSQE YI++VLE FNM++ KP++TP++ LS++MCP T EK M KVPY+ A+
Sbjct: 1056 RKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAV 1115
Query: 1050 GCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQF 1220
G LM +CTRPDI +AV +VSRF +PG+EHW+AVK ILRYL+GT LC+ G+D
Sbjct: 1116 GSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPIL 1175
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
KGYTDAD D+D RKS++GY+F + GAIS +SK Q C+ALST EAE + + +E +
Sbjct: 1176 KGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMI 1235
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W K FL LG++ + + CDSQ+ I +K+ YH +TK+ID++Y+++R+MV +
Sbjct: 1236 WLKRFLQELGLHQ---KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1292
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
V IST++ A LTK + +E + +G+
Sbjct: 1293 KVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
Score = 224 bits (572), Expect(2) = e-123
Identities = 114/254 (44%), Positives = 176/254 (69%), Gaps = 4/254 (1%)
Frame = +2
Query: 83 DRPQIPRHRFEIEGEAFLVTP*DEEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWE 253
+RP++ R+ E L++ D+ EP ++ E L+ P K++ +KAM+E+M+S N ++
Sbjct: 788 ERPRVESRRYP-STEYVLIS--DDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYK 844
Query: 254 LVDLPMGRKAIENKWVLKIKRKAEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLV 433
LV+LP G++ ++ KWV K+K+ + + RYKARLV KG+ Q GID++EIFS VV+ T +
Sbjct: 845 LVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSI 904
Query: 434 KLILLIVANLDIELHQMDVKTAFLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFK 613
+ IL + A+LD+E+ Q+DVKTAFL+G+LEE+IYM+QP F G++H VC+ +S+YG K
Sbjct: 905 RTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLK 964
Query: 614 QSSRQWYLCFHNAIISYGFTMIHEDHCVYIKR-SKDTFVILSLYVDDILIAASDVEYVKE 790
Q+ RQWY+ F + + S + + D CVY KR S++ F+IL LYVDD+LI D + +
Sbjct: 965 QAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAK 1024
Query: 791 IKGWLSSIFEMKDM 832
+KG LS F+MKD+
Sbjct: 1025 LKGDLSKSFDMKDL 1038
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 236 bits (603), Expect(2) = e-123
Identities = 125/273 (45%), Positives = 179/273 (65%), Gaps = 3/273 (1%)
Frame = +3
Query: 870 RLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAI 1049
R + LSQ+ Y+KK+L FNMQDCK I+TP+ + LS MCP E+++M +VPYA A+
Sbjct: 1037 RKIWLSQKNYLKKILRRFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAV 1096
Query: 1050 GCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQF 1220
G LM ICTRPDI AV VSR+ ++PG EHW AVKRILRY++GT N +LCY G++
Sbjct: 1097 GSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGGSEFTV 1156
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
+GY D+D DLD+RKST+GYVF L A+S SK Q+ +ALST EAE + + A +EA+
Sbjct: 1157 RGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAI 1216
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W + L LG + + + + CDSQ+ + ++P +H +TK+I ++Y+FVR++V V
Sbjct: 1217 WIQRLLEELG---HKQQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSV 1273
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
+++ I T + +A LTK I + S GL
Sbjct: 1274 DLQKIHTKENLADVLTKSINTDKFVWSRSSCGL 1306
Score = 234 bits (597), Expect(2) = e-123
Identities = 118/232 (50%), Positives = 160/232 (68%), Gaps = 4/232 (1%)
Frame = +2
Query: 149 DEEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRK 319
++ EP +EAL W+ AM+E++++ N+ WELV LP GRKAI NKWV KIKR
Sbjct: 788 EDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRD 847
Query: 320 AEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTA 499
D +ERY+ARLV KGY Q GID+ EIFS VVR T V+++L + A D+ L Q+DVKTA
Sbjct: 848 GNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTA 907
Query: 500 FLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMI 679
FL+GELEE+IYM QP F + G+E+ VCR +S+YG KQ+ R WY F + I+S G+ +
Sbjct: 908 FLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRL 967
Query: 680 HEDHCVYIKRSKDT-FVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
DHC Y KR +D F+IL LYVDD+L+A + + ++E+K L+ FEMKD+
Sbjct: 968 SSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDL 1019
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 236 bits (602), Expect(2) = e-122
Identities = 118/232 (50%), Positives = 160/232 (68%), Gaps = 4/232 (1%)
Frame = +2
Query: 149 DEEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRK 319
++ EP +EAL W+ AM+E++++ N+ WELV LP GRKAI NKWV KIKR
Sbjct: 788 EDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKRD 847
Query: 320 AEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTA 499
D +ERY+ARLV KGY Q GID+ EIFS VVR T V+++L + A D+ L Q+DVKTA
Sbjct: 848 GNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTA 907
Query: 500 FLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMI 679
FL+GELEE+IYM QP F + G+E+ VCR +S+YG KQ+ R WY F + I+S G+ +
Sbjct: 908 FLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRL 967
Query: 680 HEDHCVYIKRSKDT-FVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
DHC Y KR +D F+IL LYVDD+L+A + + ++E+K L+ FEMKD+
Sbjct: 968 SSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDL 1019
Score = 233 bits (594), Expect(2) = e-122
Identities = 122/269 (45%), Positives = 178/269 (66%), Gaps = 3/269 (1%)
Frame = +3
Query: 882 LSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAIGCLM 1061
LSQ+ Y+KK+L FNMQDCK I+T + + LS MCP E+++M +VPYA A+G LM
Sbjct: 1041 LSQKNYLKKILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLM 1100
Query: 1062 ---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQFKGYT 1232
ICTRPDI AV +VSR+ ++PG EHW AVKRILRY++GT + +LCY G++ +GY
Sbjct: 1101 FAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGGSEFTVRGYV 1160
Query: 1233 DAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAVWFKH 1412
D+D DLD+RKST+GYVF L A+S SK Q+ +ALST EAE + + A ++A+W +
Sbjct: 1161 DSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQR 1220
Query: 1413 FLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREVNVKY 1592
L LG + + + + CDSQ+ + ++P +H +TK+I ++Y+FVR++V V+++
Sbjct: 1221 LLEELG---HKQQKILVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQK 1277
Query: 1593 ISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
I T + +A LTKPI + S GL
Sbjct: 1278 IHTKENLADVLTKPINTDKFVWSRSSCGL 1306
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 246 bits (627), Expect(3) = e-122
Identities = 132/274 (48%), Positives = 180/274 (65%), Gaps = 3/274 (1%)
Frame = +3
Query: 870 RLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAI 1049
RLL+LSQ YI KVL F M++ K N P LS+ CP+TP ++E+MR+VPYA A+
Sbjct: 389 RLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPKTPQDEEKMRRVPYASAV 448
Query: 1050 GCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQF 1220
G LM +CTRPDIC+AV +VSR+ S+PG +HW AVK IL+YL+ T NY L Y G +L
Sbjct: 449 GSLMYAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKYLRRTRNYMLVYSGRELIP 508
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GYTD+D D D RKSTS VF L GAI RS KQ+C+A STMEAE V A +EAV
Sbjct: 509 IGYTDSDFQSDRDSRKSTSEAVFTLGGGAIIWRSVKQTCVADSTMEAEYVAACEAAKEAV 568
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W + FL L V N EP+ + CD+ +A K+P+ H K K+I+ K++ VR++V +V
Sbjct: 569 WLREFLKELEVVPNMHEPIRLYCDNSGAVANAKEPRNHRKGKHIERKFHLVREIVSRGDV 628
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGLR 1682
+V+ I++ IA TK + ++E+H++ +GLR
Sbjct: 629 SVEKIASANNIADPFTKTLPARSFEQHLEGMGLR 662
Score = 219 bits (558), Expect(3) = e-122
Identities = 119/246 (48%), Positives = 155/246 (63%), Gaps = 4/246 (1%)
Frame = +2
Query: 107 RFEIEGEAFL-VTP*DEEEPRNINEALTCPAKDKWLKAME---EKMKSNQAWELVDLPMG 274
R+ GEA + VT +++P A+ ++KW +AM+ E M SN W+LVDLP G
Sbjct: 126 RYRENGEAQVAVTDGSDDDPLTFKMAMDDVDREKWQEAMKLEIESMYSNSVWKLVDLPEG 185
Query: 275 RKAIENKWVLKIKRKAEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIV 454
K I KW+ K KR +E +KARLVAKG+TQ G+DYE+ FS V ++++L I
Sbjct: 186 IKPIGCKWIYKXKRGPNGKVETFKARLVAKGFTQKEGVDYEDTFSPVXMLKSIRILLSIX 245
Query: 455 ANLDIELHQMDVKTAFLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWY 634
A D E+ QMDVKT FLNG LEE IYM QP FV K QE VC+ RSIYG KQ+SR W
Sbjct: 246 AYYDYEIWQMDVKTXFLNGHLEETIYMVQPEGFVVKDQEQKVCKLQRSIYGLKQASRSWN 305
Query: 635 LCFHNAIISYGFTMIHEDHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSI 814
+ F+ AI SYGF + CVY + D V L LYVDDIL+ +DVE + ++K WL+S
Sbjct: 306 IIFNEAIKSYGFEQNLGEPCVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQ 365
Query: 815 FEMKDM 832
F+MKD+
Sbjct: 366 FQMKDL 371
Score = 23.1 bits (48), Expect(3) = e-122
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1
Query: 832 GEASNILGVKISRD 873
GEAS ILG++++RD
Sbjct: 372 GEASYILGIQMTRD 385
>emb|CAN69396.1| hypothetical protein VITISV_021034 [Vitis vinifera]
Length = 2026
Score = 233 bits (595), Expect(2) = e-121
Identities = 115/229 (50%), Positives = 160/229 (69%), Gaps = 3/229 (1%)
Frame = +2
Query: 155 EEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRKAE 325
++P + ++A+ KW++AM E++KS N W+L++LP K + KWV K KR A+
Sbjct: 590 KDPVSFSQAMESDDSSKWMEAMNEELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAK 649
Query: 326 DSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAFL 505
+IER+KARLVAKG+TQ GIDY++ FS V + +++I+ +VA+ D+ELHQMDVKTAFL
Sbjct: 650 GNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFL 709
Query: 506 NGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIHE 685
NG L+E IYM+Q F KKG EH VC+ +SIYG KQ+SRQWY+ F+N I +GF
Sbjct: 710 NGNLDEDIYMEQXEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITYFGFKENXV 769
Query: 686 DHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
D C+Y+K S F+ L LYVDDIL+A+SD+ ++E K +LS F M DM
Sbjct: 770 DQCIYLKVSGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDM 818
Score = 231 bits (589), Expect(2) = e-121
Identities = 120/273 (43%), Positives = 180/273 (65%), Gaps = 4/273 (1%)
Frame = +3
Query: 873 LLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAIG 1052
+L LSQ+ YI +VLE FNMQ C P+ K + LS+ CP+ E+EQM+K+PYA +G
Sbjct: 837 VLGLSQKGYIDRVLERFNMQSCSSGIAPILKGDKLSKMQCPRNNXEREQMKKIPYASXVG 896
Query: 1053 CLMI---CTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGND-LQF 1220
LM CTRPDI +AV ++ R+ SDPG EHWK K+++RYL+GT +Y L Y ++ L+
Sbjct: 897 SLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKXAKKVMRYLQGTKDYMLTYKRSEQLEV 956
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GY+++D G L+ KSTSG+VF+L NGAIS +S+KQS A STMEAE V A +
Sbjct: 957 VGYSBSDYGGCLBSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHVL 1016
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W ++F+ LGV + +P+ I CD+ AT+ ++K+ K+ +K++D+KY V++ V +++
Sbjct: 1017 WLQNFISGLGVVDPIAKPLRIYCDNTATVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQM 1076
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
+++ I T ++A LTK + AY HV +GL
Sbjct: 1077 SIENIRTTLMVADPLTKGLPPKAYLEHVMRMGL 1109
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 235 bits (599), Expect(2) = e-121
Identities = 122/259 (47%), Positives = 174/259 (67%), Gaps = 3/259 (1%)
Frame = +3
Query: 870 RLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAI 1049
R + LSQ+ Y++KVL FNMQD PI+TP+ + LS M P + E+ +M +VPYA A+
Sbjct: 1033 RKIWLSQKNYLQKVLRRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAV 1092
Query: 1050 GCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQF 1220
G LM ICTRPDI AV VSRF +DPG+EHW AVKRILRY++GT +LC+ G++
Sbjct: 1093 GSLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSEFTI 1152
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
+GY D+D DLD+RKST+GYVF L GA+S SK Q+ +ALST EAE + + A +EA+
Sbjct: 1153 RGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAI 1212
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W + L LG + + +T+ CDS + + ++P +H +TK+I ++Y+FVR++V V
Sbjct: 1213 WTQRLLEELG---HKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSV 1269
Query: 1581 NVKYISTHQVIAHSLTKPI 1637
N++ I T +A +TKPI
Sbjct: 1270 NMQKIHTKDNLADVMTKPI 1288
Score = 229 bits (583), Expect(2) = e-121
Identities = 114/232 (49%), Positives = 158/232 (68%), Gaps = 4/232 (1%)
Frame = +2
Query: 149 DEEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRK 319
++ EP +EA+ W+ AM+E++++ N WELV+LP GRKAI NKWV KIKR
Sbjct: 784 EDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRD 843
Query: 320 AEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTA 499
D +ERY+ARLV KGY Q GID+ EIFS VVR T ++++L + A ++ L Q+DVKTA
Sbjct: 844 GNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTA 903
Query: 500 FLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMI 679
FL+GELEE+IYM QP F +K +E+ VCR +S+YG KQ+ R WY F + I+S G+ +
Sbjct: 904 FLHGELEEEIYMLQPEGFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRL 963
Query: 680 HEDHCVYIKRSKD-TFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
DHC Y KR D F+IL LYVDD+L+ + + V+E+K L+ F+MKD+
Sbjct: 964 SSDHCTYYKRFDDGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDL 1015
>dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Glycine max]
Length = 1321
Score = 233 bits (594), Expect(3) = e-120
Identities = 119/230 (51%), Positives = 157/230 (68%), Gaps = 3/230 (1%)
Frame = +2
Query: 152 EEEPRNINEALTCPAKDKWLKAMEEKM---KSNQAWELVDLPMGRKAIENKWVLKIKRKA 322
E +P ++A++C + W AM+++M +SN+ W LV+LP G KAI KWV K K+ +
Sbjct: 797 ENDPETFDQAMSCKESNLWYDAMKDEMSSMQSNKVWNLVELPNGAKAIGCKWVFKTKKDS 856
Query: 323 EDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAF 502
+IERYKARLVAKG+TQ GIDY+E FS V + +++IL +VA+ D+EL QMDVKTAF
Sbjct: 857 LGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAF 916
Query: 503 LNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIH 682
LNG+LEE++YM QP F EH VC+ +SIYG KQ+SRQWYL FH I S+GF
Sbjct: 917 LNGDLEEEVYMKQPEGFSSNSGEHLVCKLNKSIYGLKQASRQWYLKFHGIISSFGFDENP 976
Query: 683 EDHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
D C+Y K S L LYVDDIL+AA+D + E+K +LS F+MKDM
Sbjct: 977 MDQCIYHKVSGSKICFLVLYVDDILLAANDRGLLHEVKQFLSKNFDMKDM 1026
Score = 227 bits (578), Expect(3) = e-120
Identities = 118/273 (43%), Positives = 172/273 (63%), Gaps = 4/273 (1%)
Frame = +3
Query: 873 LLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAIG 1052
+L LSQE YI K+LE F M+DC P P+ K + + CP+ E+EQM+ +PYA +G
Sbjct: 1045 ILGLSQETYINKILERFRMKDCSPSVAPIVKGDRFNLNQCPKNDFEREQMKNIPYASVVG 1104
Query: 1053 CLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGND-LQF 1220
LM +CTRPDI +AV ++ R+ S+PG +HW+A K++LRYL+GT +Y L Y D L
Sbjct: 1105 SLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWRAAKKVLRYLQGTKDYMLMYRQTDNLDA 1164
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GY+D+D +D R+STSGY+F++ GAIS S KQS A STMEAE V+ A V
Sbjct: 1165 IGYSDSDFAGCVDSRRSTSGYIFMMAGGAISWGSVKQSLAATSTMEAEFVSCFEATSHGV 1224
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W K F+ L + + P+ I CD+ A + K+ K ++K+IDIKY +R+ V ++V
Sbjct: 1225 WLKSFISGLKIIDTISRPLRIFCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKDKKV 1284
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
+++IST +IA LTK + ++ HV+ +GL
Sbjct: 1285 VIEHISTELMIADPLTKGMPPFKFKDHVERMGL 1317
Score = 22.7 bits (47), Expect(3) = e-120
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 832 GEASNILGVKISRD 873
G+AS ++G+KI RD
Sbjct: 1027 GDASYVIGIKIHRD 1040
>emb|CAN64073.1| hypothetical protein VITISV_038270 [Vitis vinifera]
Length = 1181
Score = 230 bits (587), Expect(2) = e-120
Identities = 118/230 (51%), Positives = 159/230 (69%), Gaps = 3/230 (1%)
Frame = +2
Query: 152 EEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRKA 322
E++P ++++ +KW++AM+++MKS N W+LV+LP G K I KW+ K KR +
Sbjct: 653 EDDPISVSQVKQSSNSEKWIEAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDS 712
Query: 323 EDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAF 502
+ +I RYKARLVAKG+TQ GIDY+E FS V ++I+ +VA+ D+ELHQMDVKTAF
Sbjct: 713 KGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAF 772
Query: 503 LNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIH 682
LNG ++E IYM QP +F K + VCR RSIYG KQ+SRQWY F I S+GF
Sbjct: 773 LNGNIDETIYMVQPENFESKDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENT 832
Query: 683 EDHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
D C+Y+K S F+IL LYVDDIL+A+SDV + E K +LSS F+MKD+
Sbjct: 833 VDQCIYLKFSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDL 882
Score = 229 bits (585), Expect(2) = e-120
Identities = 115/273 (42%), Positives = 175/273 (64%), Gaps = 4/273 (1%)
Frame = +3
Query: 873 LLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAIG 1052
+L LSQ+ YI KVL F M +C P +TPV+K + S CP+ EK+ M + PYA A+G
Sbjct: 901 ILGLSQKAYIDKVLSRFGMSNCAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVG 960
Query: 1053 CLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYH-GNDLQF 1220
LM +CTRPDI Y V ++ R+ S+PG +HWK KR++RYL+ T +Y L Y + L+
Sbjct: 961 SLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYRRSSHLEI 1020
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GY+D+D LD R+STSGY+F+L GA+S +S KQ+ +A STMEAE + A +
Sbjct: 1021 VGYSDSDFAGCLDSRRSTSGYIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYEASNHGI 1080
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W ++F+ L + + +P+ INCD++A Y+K+ + K+K+IDIK+ V++ V +V
Sbjct: 1081 WLRNFVTQLXIVDGIEKPLRINCDNKAXELYSKNNRSSSKSKHIDIKFLVVKERVQSLQV 1140
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
++++IST+ +IA LTK + Y HV +G+
Sbjct: 1141 SIEHISTNSMIADPLTKGLPPKVYHEHVTHMGV 1173
>emb|CDF77009.1| hypothetical transposable element-related protein, partial [Boechera
divaricarpa]
Length = 1350
Score = 232 bits (591), Expect(3) = e-119
Identities = 115/230 (50%), Positives = 158/230 (68%), Gaps = 3/230 (1%)
Frame = +2
Query: 152 EEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRKA 322
+++P + EA+ +KW+K MEE+ +S N+ W+LV+LP G+K I KW+ K KR +
Sbjct: 825 KDDPVSFREAMGSSNSEKWIKGMEEEYQSMLDNKVWDLVELPKGQKPIGCKWIFKTKRDS 884
Query: 323 EDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAF 502
+++RYKARLVAKGYTQ GIDY+E FS V + I+ +VA+ D+ELHQMDVKTAF
Sbjct: 885 SGNVQRYKARLVAKGYTQKEGIDYKETFSPVSSKESFRTIMALVAHYDLELHQMDVKTAF 944
Query: 503 LNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIH 682
LNG+++E IYM+QP +FV + VC+ +SIYG KQ+SRQWY FH IIS+GF +
Sbjct: 945 LNGDIDETIYMEQPENFVSHDSKKMVCKLNKSIYGLKQASRQWYHKFHKVIISFGFEVNL 1004
Query: 683 EDHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
+ CVY K S + L LYVDDIL+A +D+ + EIK +L FEMKD+
Sbjct: 1005 VEDCVYQKFSGSKLIFLVLYVDDILLATNDINMLHEIKNFLKDNFEMKDL 1054
Score = 226 bits (577), Expect(3) = e-119
Identities = 116/273 (42%), Positives = 174/273 (63%), Gaps = 4/273 (1%)
Frame = +3
Query: 873 LLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAIG 1052
+L LSQ+ YI KVL+ F M DCKP +TPV+K + CP+ E ++M+K+PYA A+G
Sbjct: 1073 ILRLSQKNYIDKVLKRFGMHDCKPGDTPVAKGDKFCLSQCPKENLEIQEMQKIPYASAVG 1132
Query: 1053 CLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGND-LQF 1220
LM +CTRPDI Y V ++ R+ S+PG +HWKA KR++RYL+ T +Y L Y +D L+
Sbjct: 1133 SLMYAQVCTRPDIAYIVGVLGRYLSNPGLDHWKAAKRVMRYLQRTKDYMLTYQRSDNLEI 1192
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GY+D+D D RKSTSGYVFLL GAIS RS KQS +A STM AE V + A + +
Sbjct: 1193 IGYSDSDFAGCQDSRKSTSGYVFLLAGGAISWRSAKQSLVASSTMAAEFVAVFEASNQGL 1252
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W K+F+ L + P+ I CD+++ + Y+ + K+K+IDIK+ V++ + ++
Sbjct: 1253 WLKNFVTRLQILEGIERPLKIYCDNKSAVLYSNKNRSTTKSKFIDIKFLVVQERIQSGDI 1312
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
++++I T+ ++A LTK I + H +G+
Sbjct: 1313 SIEHIGTNSMVADPLTKGIPPKVFHEHTARMGV 1345
Score = 22.3 bits (46), Expect(3) = e-119
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 832 GEASNILGVKISRD 873
GEAS +LG++I RD
Sbjct: 1055 GEASFVLGIQIIRD 1068
>emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]
Length = 1356
Score = 234 bits (598), Expect(2) = e-119
Identities = 116/230 (50%), Positives = 158/230 (68%), Gaps = 3/230 (1%)
Frame = +2
Query: 152 EEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRKA 322
E++P N +A+ KW++AM E+ KS N+ WELV LP+G K I KW+ K KR +
Sbjct: 828 EDDPINFQQAMKSSNSHKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDS 887
Query: 323 EDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAF 502
++ERYKARLVAKG+TQ GID++E FS V ++I+ +VA+ D+ELHQMDVKTAF
Sbjct: 888 NGNVERYKARLVAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQMDVKTAF 947
Query: 503 LNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIH 682
LNG+++E IYM QP +FV + ++ VC+ +SIYG KQ+SRQWY FH I+SYGF
Sbjct: 948 LNGDIDETIYMVQPENFVSEDSKNMVCKLTKSIYGLKQASRQWYFKFHQIIVSYGFEANL 1007
Query: 683 EDHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
D CVY K S ++ L LYVDDIL+A +D+ + + K +LS FEMKD+
Sbjct: 1008 MDECVYHKFSGSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDL 1057
Score = 224 bits (571), Expect(2) = e-119
Identities = 113/273 (41%), Positives = 173/273 (63%), Gaps = 4/273 (1%)
Frame = +3
Query: 873 LLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAIG 1052
+L LSQ YI KVL+ + MQ+ KP +TPV+K + S CP+ E ++M+K+PYA A+G
Sbjct: 1076 ILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSLESQEMQKIPYASAVG 1135
Query: 1053 CLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGND-LQF 1220
LM +CTRPDI Y V ++ R+ S+PG +HWKA KR++RYL+ T Y L Y D L+
Sbjct: 1136 SLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKAAKRVMRYLQRTKEYMLTYRRLDQLEL 1195
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GY+D+D D R+STSGY++LL GAIS RS KQ+ + STMEAE V A + +
Sbjct: 1196 IGYSDSDFAGCQDSRRSTSGYIYLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGI 1255
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W ++F+ L V + P+ I CD+++ + Y+ + + K+KYIDIK+ V++ V ++
Sbjct: 1256 WLRNFVTGLRVLDGIERPLKIFCDNKSAVLYSNNNRSSTKSKYIDIKFLVVKEKVQSGQI 1315
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
++++I T+ +IA LTK + + H +G+
Sbjct: 1316 SIEHIGTNSMIADPLTKGLPPKVFHEHTAHMGV 1348
>emb|CAN78154.1| hypothetical protein VITISV_032622 [Vitis vinifera]
Length = 1250
Score = 233 bits (594), Expect(2) = e-119
Identities = 116/230 (50%), Positives = 157/230 (68%), Gaps = 3/230 (1%)
Frame = +2
Query: 152 EEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRKA 322
E++P N +A KW++AM E+ KS N+ WELV LP+G K I KW+ K KR +
Sbjct: 722 EDDPINFQQAXKSSNSXKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDS 781
Query: 323 EDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAF 502
++ERYKARLVAKG+TQ GID++E FS V ++I+ +VA+ D+ELHQMDVKTAF
Sbjct: 782 NGNVERYKARLVAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQMDVKTAF 841
Query: 503 LNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIH 682
LNG+++E IYM QP +FV + ++ VC+ +SIYG KQ+SRQWY FH I+SYGF
Sbjct: 842 LNGDIDETIYMVQPENFVSEDSKNMVCKLTKSIYGLKQASRQWYFKFHQIIVSYGFEANL 901
Query: 683 EDHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
D CVY K S ++ L LYVDDIL+A +D+ + + K +LS FEMKD+
Sbjct: 902 MDECVYHKFSGSKYIFLVLYVDDILLATNDIXILHDTKRFLSKHFEMKDL 951
Score = 223 bits (568), Expect(2) = e-119
Identities = 112/273 (41%), Positives = 173/273 (63%), Gaps = 4/273 (1%)
Frame = +3
Query: 873 LLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAIG 1052
+L LSQ YI KVL+ + MQ+ KP +TPV+K + S CP+ E ++M+K+PYA A+G
Sbjct: 970 ILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNXLESQEMQKIPYASAVG 1029
Query: 1053 CLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGND-LQF 1220
LM +CTRPDI Y V ++ R+ S+PG +HW+A KR++RYL+ T Y L Y D L+
Sbjct: 1030 SLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLDQLEL 1089
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GY+D+D D R+STSGY++LL GAIS RS KQ+ + STMEAE V A + +
Sbjct: 1090 IGYSDSDFAGCQDSRRSTSGYIYLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGI 1149
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W ++F+ L V + P+ I CD+++ + Y+ + + K+KYIDIK+ V++ V ++
Sbjct: 1150 WLRNFVTGLRVLDGIERPLKIFCDNKSAVLYSNNNRSSTKSKYIDIKFLVVKEKVQSGQI 1209
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
++++I T+ +IA LTK + + H +G+
Sbjct: 1210 SIEHIGTNSMIADPLTKGLPPKVFHEHTAHMGV 1242
>gb|AAD12997.1| gag-pol polyprotein [Zea mays]
Length = 1406
Score = 231 bits (590), Expect(3) = e-116
Identities = 119/230 (51%), Positives = 151/230 (65%), Gaps = 3/230 (1%)
Frame = +2
Query: 152 EEEPRNINEALTCPAKDKWLKAME---EKMKSNQAWELVDLPMGRKAIENKWVLKIKRKA 322
E +P A+ KWL AME E M+ N+ W+L +P G K + KWV K KR +
Sbjct: 882 EGDPTTYEAAMRSANSSKWLSAMEDELESMRMNKVWDLEVIPHGAKTVGCKWVYKTKRDS 941
Query: 323 EDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAF 502
+IERYKARLVAKG+TQ GIDY E FS V ++I+ +VA+ D+ELHQM VKTAF
Sbjct: 942 RGNIERYKARLVAKGFTQREGIDYHETFSPVSTKDSFRIIMALVAHFDLELHQMGVKTAF 1001
Query: 503 LNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIH 682
LNGELEE ++M QP FV G+EH C RSIYG KQ+SRQWY+ F I +GF
Sbjct: 1002 LNGELEENVFMAQPKGFVVSGKEHMGCHLRRSIYGLKQASRQWYIKFDQTIRKFGFEENK 1061
Query: 683 EDHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
ED+C+Y K K ++ L LYVDDIL+A+SD + + E KG+LSS F+MKDM
Sbjct: 1062 EDNCIYAKFRKGKYIFLVLYVDDILLASSDKDLLAETKGFLSSNFDMKDM 1111
Score = 216 bits (550), Expect(3) = e-116
Identities = 115/276 (41%), Positives = 164/276 (59%), Gaps = 4/276 (1%)
Frame = +3
Query: 867 KRLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYA 1046
K +L LSQ+ YI+ VL+ +NM C P+ K + CP+ EK +M+ VPYA A
Sbjct: 1128 KGVLGLSQKSYIENVLKRYNMHKCNASPGPIVKGDKFGEYQCPKNQYEKNKMKSVPYASA 1187
Query: 1047 IGCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYH-GNDL 1214
IG +M +CTRPD+ + ++ R+ +PG EHWKAVK+ LRYL+GT L Y N L
Sbjct: 1188 IGSIMYAQVCTRPDLAFTTGMLGRYQKNPGIEHWKAVKKALRYLQGTKGLMLTYRRSNSL 1247
Query: 1215 QFKGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQE 1394
Q GY DAD G D KSTSGYVF+L+ GAIS +S KQ+ A STM AE V A +
Sbjct: 1248 QIVGYADADWGGCRDTLKSTSGYVFMLSGGAISWKSCKQTARASSTMHAEFVATYEATGQ 1307
Query: 1395 AVWFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHR 1574
A+W K F+ L V ++ P+ I CD++ + ++ + K KYIDIK V++ ++
Sbjct: 1308 AIWIKKFVPGLRVVDSIERPLRIYCDNEPAVFFSHNNKSSGSAKYIDIKCYIVKEKILDH 1367
Query: 1575 EVNVKYISTHQVIAHSLTKPITCVAYERHVKSLGLR 1682
+ V++I THQ++A LTK + + +H +GLR
Sbjct: 1368 TIQVEHIRTHQMLADPLTKGLPPSVFSKHAAGMGLR 1403
Score = 23.1 bits (48), Expect(3) = e-116
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 832 GEASNILGVKISRD 873
GEAS +LG++I RD
Sbjct: 1112 GEASYVLGIEIHRD 1125
>emb|CAN74511.1| hypothetical protein VITISV_011891 [Vitis vinifera]
Length = 1283
Score = 224 bits (572), Expect(2) = e-116
Identities = 115/230 (50%), Positives = 158/230 (68%), Gaps = 3/230 (1%)
Frame = +2
Query: 152 EEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRKA 322
E++P ++++ +KW++AM+++MKS N W+L +LP G K+I KW+ K KR +
Sbjct: 755 EDDPISVSQVKQSFDSEKWIEAMKDEMKSMKDNGVWDLEELPKGVKSIGCKWIFKTKRDS 814
Query: 323 EDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAF 502
+ +I +YKARLVAKG+TQ GIDY+E FS V ++I+ +VA+ D+ELHQMDVKTAF
Sbjct: 815 KGNIVKYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAF 874
Query: 503 LNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIH 682
LNG ++E IYM QP +F + VCR RSIYG KQ+SRQWY F I S+GF
Sbjct: 875 LNGNIDETIYMVQPENFESXDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENT 934
Query: 683 EDHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
D C+Y+K S F+IL LYVDDIL+A+SDV + E K +LSS F+MKD+
Sbjct: 935 VDQCIYLKFSGSKFIILVLYVDDILLASSDVXLLHETKRFLSSKFDMKDL 984
Score = 223 bits (569), Expect(2) = e-116
Identities = 114/273 (41%), Positives = 172/273 (63%), Gaps = 4/273 (1%)
Frame = +3
Query: 873 LLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAIG 1052
+L LSQ+ YI KVL F M +C P +TPV+K + S CP+ EK+ M + PYA A+G
Sbjct: 1003 ILGLSQKAYIDKVLSRFGMSNCAPGDTPVAKXDKFSLHQCPKNELEKKDMERFPYASAVG 1062
Query: 1053 CLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYH-GNDLQF 1220
LM +CTRPDI Y V ++ R+ S+PG +HWK KR++RYL+ T +Y L Y + L+
Sbjct: 1063 SLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYRIXSHLEI 1122
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GY D+D LD R+STS Y+F+L GA+S +S KQ+ I STMEAE + A +
Sbjct: 1123 VGYXDSDFAGCLDSRRSTSXYIFMLAGGAVSWKSVKQTLIXSSTMEAEFIACYEASNHGI 1182
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W ++F+ L + + +P+ INCD++A Y+K+ + K+K+IDIK+ V++ V +V
Sbjct: 1183 WLRNFVTQLRIVDXIEKPLXINCDNKAAELYSKNNRSSSKSKHIDIKFLVVKEKVQSLQV 1242
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
++++IST+ +IA LTK + Y HV +G+
Sbjct: 1243 SIEHISTNSMIADXLTKGLPPKVYHEHVTHMGV 1275
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 225 bits (573), Expect(2) = e-116
Identities = 114/245 (46%), Positives = 159/245 (64%), Gaps = 4/245 (1%)
Frame = +2
Query: 110 FEIEGEAFLVTP*DEEEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRK 280
+ +EG ++ EP EA+ +W AM+E++++ N W+LV LP GRK
Sbjct: 764 YVMEGNVAYCLLTEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRK 823
Query: 281 AIENKWVLKIKRKAEDSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVAN 460
I NKWV KIKR +D +ERY+ARLV KGY Q GID+ EIFS VVR T V+++L + A
Sbjct: 824 PIGNKWVFKIKRNGDDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCAT 883
Query: 461 LDIELHQMDVKTAFLNGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLC 640
++ L Q+DVKTAFL+G+LEE+IYM QP F K ++ VCR +S+YG KQ+ R WY
Sbjct: 884 FNLHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKR 943
Query: 641 FHNAIISYGFTMIHEDHCVYIKR-SKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIF 817
F + I+ G+ ++ D C Y KR KD FVIL LYVDD+L+A + +++ E+K L+ F
Sbjct: 944 FDSFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREF 1003
Query: 818 EMKDM 832
EMKD+
Sbjct: 1004 EMKDL 1008
Score = 222 bits (565), Expect(2) = e-116
Identities = 122/273 (44%), Positives = 174/273 (63%), Gaps = 3/273 (1%)
Frame = +3
Query: 870 RLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYAI 1049
R + LSQ+ Y+KK+L F+MQDCK I+TP+ + +S M P + +M +VPYA A+
Sbjct: 1026 RKIWLSQKNYLKKILSRFSMQDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAV 1085
Query: 1050 GCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYHGNDLQF 1220
G LM ICTRPDI AV +VSR+ ++PG+EHW VKRILRY+KGT + +LCY G+D
Sbjct: 1086 GSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYGGSDFII 1145
Query: 1221 KGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQEAV 1400
GY D+D DLD+ KST+GYVF + GA+S SK Q+ +A ST EAE V + A +EA+
Sbjct: 1146 NGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAI 1205
Query: 1401 WFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHREV 1580
W K L LG + E V++ CDSQ+ + ++P +H +TK+I ++Y+F+R+ V V
Sbjct: 1206 WLKMLLEELG---HKQEFVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTV 1262
Query: 1581 NVKYISTHQVIAHSLTKPITCVAYERHVKSLGL 1679
+++ I T +A LTK I + S GL
Sbjct: 1263 DLQKIHTADNVADFLTKIINVDKFTWCRSSCGL 1295
>gb|ABF96216.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 904
Score = 228 bits (581), Expect(3) = e-115
Identities = 111/229 (48%), Positives = 157/229 (68%), Gaps = 3/229 (1%)
Frame = +2
Query: 155 EEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRKAE 325
++P + EA+T KWL+ M++++KS N W+LV++P G K + KWV K K ++
Sbjct: 381 DDPTSFKEAITSEHSSKWLEVMDDELKSMSHNGVWDLVEIPKGSKTVGCKWVYKTKLDSK 440
Query: 326 DSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAFL 505
IER+KARLVAKG++Q GIDY E FS V + ++++ +VA+ D+ELHQMDVKTAFL
Sbjct: 441 GKIERFKARLVAKGFSQREGIDYNETFSPVSKKDSFRIVMALVAHYDLELHQMDVKTAFL 500
Query: 506 NGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIHE 685
NGEL E +YM +P FV +G++H C+ +SIY KQ+SRQWYL F I +GF
Sbjct: 501 NGELHEDVYMAEPEGFVMEGKDHLACKLKKSIYELKQASRQWYLKFDEIIKRFGFKENEV 560
Query: 686 DHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
D+C+YIK F+IL LYVDDIL+A+SD+ + + K +LSS F+MKD+
Sbjct: 561 DNCIYIKTKGGKFIILVLYVDDILLASSDINMLHQTKEFLSSNFDMKDL 609
Score = 216 bits (550), Expect(3) = e-115
Identities = 112/278 (40%), Positives = 172/278 (61%), Gaps = 4/278 (1%)
Frame = +3
Query: 867 KRLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYA 1046
K +L LSQ+ YI +VL+ +NM C P+ K + P+ E +QM+ VPYA A
Sbjct: 626 KGVLGLSQKSYISRVLKRYNMSKCSATPAPIVKGDKFGLFQSPKNKLESDQMKMVPYASA 685
Query: 1047 IGCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYH-GNDL 1214
+G LM +CTRPD+ + ++SRF S+PG +HWKAVK++LRY +GT +Y L Y +L
Sbjct: 686 VGSLMYAEVCTRPDLAFVTGMLSRFQSNPGLDHWKAVKKVLRYFQGTKDYMLTYKKSEEL 745
Query: 1215 QFKGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQE 1394
+ GY+DAD +D +KSTSGYVF L NGAIS +S KQ+ STM+AE + A +
Sbjct: 746 EVLGYSDADFAGCVDTKKSTSGYVFTLANGAISWKSSKQTLTTSSTMQAEFLACYEATGQ 805
Query: 1395 AVWFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHR 1574
AVW K+ + L V ++ +P+T+ D++A + Y+ + K K+IDIKY+ V+D + +
Sbjct: 806 AVWLKNLIPGLRVVDSISKPITLYYDNKAAVFYSSNNKSSGAAKHIDIKYHVVKDRIQDQ 865
Query: 1575 EVNVKYISTHQVIAHSLTKPITCVAYERHVKSLGLRRC 1688
+ +++IST ++A LTK + ++ HV +G+ C
Sbjct: 866 TIKIEHISTKSMLADPLTKGLPPNLFKDHVAGMGITDC 903
Score = 23.1 bits (48), Expect(3) = e-115
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 832 GEASNILGVKISRD 873
GEAS +LG++I RD
Sbjct: 610 GEASYVLGIEIHRD 623
>gb|AAP46197.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 890
Score = 228 bits (581), Expect(3) = e-115
Identities = 111/229 (48%), Positives = 157/229 (68%), Gaps = 3/229 (1%)
Frame = +2
Query: 155 EEPRNINEALTCPAKDKWLKAMEEKMKS---NQAWELVDLPMGRKAIENKWVLKIKRKAE 325
++P + EA+T KWL+ M++++KS N W+LV++P G K + KWV K K ++
Sbjct: 367 DDPTSFKEAITSEHSSKWLEVMDDELKSMSHNGVWDLVEIPKGSKTVGCKWVYKTKLDSK 426
Query: 326 DSIERYKARLVAKGYTQ*AGIDYEEIFSHVVRFTLVKLILLIVANLDIELHQMDVKTAFL 505
IER+KARLVAKG++Q GIDY E FS V + ++++ +VA+ D+ELHQMDVKTAFL
Sbjct: 427 GKIERFKARLVAKGFSQREGIDYNETFSPVSKKDSFRIVMALVAHYDLELHQMDVKTAFL 486
Query: 506 NGELEEKIYMDQPVDFVKKGQEHTVCRHCRSIYGFKQSSRQWYLCFHNAIISYGFTMIHE 685
NGEL E +YM +P FV +G++H C+ +SIY KQ+SRQWYL F I +GF
Sbjct: 487 NGELHEDVYMAEPEGFVMEGKDHLACKLKKSIYELKQASRQWYLKFDEIIKRFGFKENEV 546
Query: 686 DHCVYIKRSKDTFVILSLYVDDILIAASDVEYVKEIKGWLSSIFEMKDM 832
D+C+YIK F+IL LYVDDIL+A+SD+ + + K +LSS F+MKD+
Sbjct: 547 DNCIYIKTKGGKFIILVLYVDDILLASSDINMLHQTKEFLSSNFDMKDL 595
Score = 216 bits (550), Expect(3) = e-115
Identities = 112/278 (40%), Positives = 172/278 (61%), Gaps = 4/278 (1%)
Frame = +3
Query: 867 KRLLSLSQEPYIKKVLE*FNMQDCKPINTPVSKSETLSRRMCPQTP*EKEQMRKVPYAYA 1046
K +L LSQ+ YI +VL+ +NM C P+ K + P+ E +QM+ VPYA A
Sbjct: 612 KGVLGLSQKSYISRVLKRYNMSKCSATPAPIVKGDKFGLFQSPKNKLESDQMKMVPYASA 671
Query: 1047 IGCLM---ICTRPDICYAVVLVSRF*SDPGQEHWKAVKRILRYLKGTINYSLCYH-GNDL 1214
+G LM +CTRPD+ + ++SRF S+PG +HWKAVK++LRY +GT +Y L Y +L
Sbjct: 672 VGSLMYAEVCTRPDLAFVTGMLSRFQSNPGLDHWKAVKKVLRYFQGTKDYMLTYKKSEEL 731
Query: 1215 QFKGYTDAD*GRDLDERKSTSGYVFLLNNGAIS*RSKKQSCIALSTMEAELVTLSVAVQE 1394
+ GY+DAD +D +KSTSGYVF L NGAIS +S KQ+ STM+AE + A +
Sbjct: 732 EVLGYSDADFAGCVDTKKSTSGYVFTLANGAISWKSSKQTLTTSSTMQAEFLACYEATGQ 791
Query: 1395 AVWFKHFLVHLGVYNNAVEPVTINCDSQATIAYTKDPKYHLKTKYIDIKYNFVRDMVVHR 1574
AVW K+ + L V ++ +P+T+ D++A + Y+ + K K+IDIKY+ V+D + +
Sbjct: 792 AVWLKNLIPGLRVVDSISKPITLYYDNKAAVFYSSNNKSSGAAKHIDIKYHVVKDRIQDQ 851
Query: 1575 EVNVKYISTHQVIAHSLTKPITCVAYERHVKSLGLRRC 1688
+ +++IST ++A LTK + ++ HV +G+ C
Sbjct: 852 TIKIEHISTKSMLADPLTKGLPPNLFKDHVAGMGITDC 889
Score = 23.1 bits (48), Expect(3) = e-115
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 832 GEASNILGVKISRD 873
GEAS +LG++I RD
Sbjct: 596 GEASYVLGIEIHRD 609