BLASTX nr result
ID: Atropa21_contig00026176
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00026176
(2205 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 242 e-101
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 236 1e-97
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 179 6e-81
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 197 8e-80
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 197 8e-80
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 186 9e-79
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 204 4e-77
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 206 6e-76
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 190 2e-75
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 206 5e-72
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 199 6e-72
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 199 1e-71
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 144 9e-71
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 195 4e-69
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 184 1e-68
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 184 1e-68
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 195 2e-68
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 189 9e-68
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 196 4e-67
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 180 2e-66
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 242 bits (618), Expect(4) = e-101
Identities = 116/269 (43%), Positives = 175/269 (65%), Gaps = 1/269 (0%)
Frame = +1
Query: 1390 DLLRHYNRK-ITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+L+R Y RK ++PRC+MK+D+RKAY ++ FLE +L +GFP +FV IM CV+T +S
Sbjct: 565 ELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYS 624
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
+ VN F+ +GLRQGDP+S LF L MEYLSR L++++ PDF FHP C+ +T
Sbjct: 625 VLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNIT 684
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD ++FC A+++S+ + A Q FS +GL A+ +K N+ G+D+E +L
Sbjct: 685 HLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADY 744
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
+G P RYLG+PL+ +K +C L IT+ + ++ SYAGR Q+I+S+L
Sbjct: 745 VHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILS 804
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLW 2193
S+ N+W +F L + V++ V+K+CR FLW
Sbjct: 805 SMQNYWAHIFPLSKKVIQAVEKVCRKFLW 833
Score = 97.4 bits (241), Expect(4) = e-101
Identities = 49/143 (34%), Positives = 78/143 (54%)
Frame = +2
Query: 965 LRSGHILTLEQQVGLLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITE 1144
+R G L+ + + L++ + E+ L GI +K+ G F + FFK +W +I
Sbjct: 420 VRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYA 479
Query: 1145 AILETLNAGKMLHQLNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VL 1324
I E N +M +N + L+ KV + + RPIACC VIYK ISKML R+K ++
Sbjct: 480 GIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGII 539
Query: 1325 PTLVNDTQAAFVSGRSLVHNVLI 1393
+VN+ Q+ F+ GR + N+L+
Sbjct: 540 GEVVNEAQSGFIPGRHIADNILL 562
Score = 59.7 bits (143), Expect(4) = e-101
Identities = 48/211 (22%), Positives = 91/211 (43%)
Frame = +3
Query: 285 VSKIDWVFVNGDWLDIIEVCKVHFLSEGTSDNNLAHVTLVNSVPRKKKAFKYCNICSTHP 464
+S+ID +VN WL + V +L G SD++ L+ P+ K FK+ N+ +
Sbjct: 193 LSRIDKAYVNLVWLGMYAEVSVQYLPPGISDHSPLLFNLMTGRPQGGKPFKFMNVMAEQG 252
Query: 465 EFLSIVEIGSQQEVKGCKMYQVVRKLKMLKSQLRKLHSSDFNNLLNEV*KDRKNLLEVQA 644
EFL VE K+ + LK +K +L+++ + +V R L ++Q+
Sbjct: 253 EFLETVEKAWNSVNGRFKLQAIWLNLKAVKRELKQMKTQKIGLAHEKVKNLRHQLQDLQS 312
Query: 645 QLQVNPLDSDXXXXXXXXGRKFNRSSYLAEVLLVQRSKAT*MKLGDDNTR*LHSILKKKK 824
Q + D S++ + +L Q+S+ T ++ GD N++ + +K +
Sbjct: 313 QDDFDHNDI-MQTDAKSIMNDLRHWSHIEDSILQQKSRITWLQQGDTNSKLFFTAVKARH 371
Query: 825 LQQSIYQLKNESQTMQHDPEVITGIFVRVYQ 917
I L E + D + + + Y+
Sbjct: 372 AINRIDMLNTEDGRVIQDADEVQEEILEFYK 402
Score = 40.0 bits (92), Expect(4) = e-101
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +2
Query: 23 VYAYNTKEERKELWEYLCQVHDGNNFLPWMRLGDLNSILHMEDRV*GNNVTTAKLMDLQ 199
VY +T +RK LW L Q + P + +GD N++ H DR+ G VT A+ D Q
Sbjct: 106 VYGLHTIADRKSLWSGLLQCVQQQD--PMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQ 162
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 236 bits (602), Expect(4) = 1e-97
Identities = 115/269 (42%), Positives = 173/269 (64%), Gaps = 1/269 (0%)
Frame = +1
Query: 1390 DLLRHYNRK-ITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+L+R YNR+ ++PRC++K+D+RKAY ++ FLE ML+ GFP F++ IM CV T +S
Sbjct: 568 ELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYS 627
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
I +N F+ ++GLRQGDP+S LF L MEYLSR + M P+F FHP C+ KLT
Sbjct: 628 ILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLT 687
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD ++F A+ +S+ ++M A FS+ +GL A+ +K + G+ E ++L
Sbjct: 688 HLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADR 747
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
IGS P RYLG+PL+ +K N +C L KIT + + SYAGR Q+++++L+
Sbjct: 748 IQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILY 807
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLW 2193
S+ N+WG +F L + ++K V+ CR FLW
Sbjct: 808 SMQNYWGQIFPLPKKLIKAVETTCRKFLW 836
Score = 92.4 bits (228), Expect(4) = 1e-97
Identities = 52/159 (32%), Positives = 84/159 (52%)
Frame = +2
Query: 917 MLGESGGNRQKAHSAFLRSGHILTLEQQVGLLKPYSRKEVKNNLFGININKSSGTTKFES 1096
+LG S + +R G L+ L++P + +E+ L I+ K+ G F S
Sbjct: 407 LLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNS 466
Query: 1097 GFFKATWSITGDDITEAILETLNAGKMLHQLNTTSIALISKVTNLESAGQIRPIACCNVI 1276
FFK +W + +I E IL+ G M +N T++ LI K+ + A RPIACC+ +
Sbjct: 467 VFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTL 526
Query: 1277 YKCISKMLYRRLK*VLPTLVNDTQAAFVSGRSLVHNVLI 1393
YK ISK+L +RL+ V+ +V+ Q F+ R + N+L+
Sbjct: 527 YKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILL 565
Score = 61.2 bits (147), Expect(4) = 1e-97
Identities = 47/190 (24%), Positives = 87/190 (45%)
Frame = +3
Query: 288 SKIDWVFVNGDWLDIIEVCKVHFLSEGTSDNNLAHVTLVNSVPRKKKAFKYCNICSTHPE 467
S+ID FVN W++ V + G SD++ L + FK+ N +
Sbjct: 197 SRIDKSFVNVAWINQYPDVVVEYREAGISDHSPLIFNLATQHDEGGRPFKFLNFLADQNG 256
Query: 468 FLSIVEIGSQQEVKGCKMYQVVRKLKMLKSQLRKLHSSDFNNLLNEV*KDRKNLLEVQAQ 647
F+ +V+ KM + +L+ +K L+ HS F+ +V + R+ L VQA
Sbjct: 257 FVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSKKFSKAHCQVEELRRKLAAVQAL 316
Query: 648 LQVNPLDSDXXXXXXXXGRKFNRSSYLAEVLLVQRSKAT*MKLGDDNTR*LHSILKKKKL 827
+V+ + S+ + + S + E +L Q+S+ + LGD N++ + +K +K
Sbjct: 317 PEVSQV-SELQEEEKDLIAQLRKWSTIDESILKQKSRIQWLSLGDSNSKFFFTAIKVRKA 375
Query: 828 QQSIYQLKNE 857
+ I L+N+
Sbjct: 376 RNKIVLLQND 385
Score = 38.9 bits (89), Expect(4) = 1e-97
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Frame = +2
Query: 8 FWVTFVYAYNTKEERKELWEYLCQVHDGNNFL-----PWMRLGDLNSILHMEDRV*GNNV 172
F + VY +T +RK LWE L NF+ P + +GD N++ +DR+ GN+V
Sbjct: 103 FKMAAVYGLHTIADRKVLWEELY------NFVSVCHEPCILIGDYNAVYSAQDRLNGNDV 156
Query: 173 TTAKLMDLQ 199
+ A+ DL+
Sbjct: 157 SEAETSDLR 165
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 179 bits (455), Expect(4) = 6e-81
Identities = 91/261 (34%), Positives = 149/261 (57%)
Frame = +1
Query: 1420 TPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFSIKVNAGSHDYF 1599
T R +++D+ KAY + FL +L+ P F+ I +C+++ +SI N +F
Sbjct: 585 TTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFF 644
Query: 1600 EGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLTYLTFADDFIIF 1779
+G++G+RQGDP+SS LFVLVM+ LS+ LD F HP C +T+L+FADD ++F
Sbjct: 645 QGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVF 704
Query: 1780 CNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLALTGFAIGSFPIR 1959
+ +S+ ++ L F + +GL N +K L + G + L G GS P+R
Sbjct: 705 SDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVR 764
Query: 1960 YLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLFSLHNFWGAVFI 2139
YLG+PL +K + + L +I + +RH S+AGR Q+++SV++S NFW +VFI
Sbjct: 765 YLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFI 824
Query: 2140 LHQSVLKEVDKLCRGFLWGNS 2202
L++++++C FLW +
Sbjct: 825 FPNQCLQKLEQMCNAFLWSGA 845
Score = 89.0 bits (219), Expect(4) = 6e-81
Identities = 47/124 (37%), Positives = 65/124 (52%)
Frame = +2
Query: 1022 SRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQLNTTS 1201
S +E+ LF + NK+ G F FF W+I + AI E +G + N T+
Sbjct: 448 SEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATA 507
Query: 1202 IALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSGRSLVH 1381
I LI KVT + Q RP+ACC IYK I++++ RRLK + V Q F+ GR L
Sbjct: 508 ITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCE 567
Query: 1382 NVLI 1393
NVL+
Sbjct: 568 NVLL 571
Score = 65.1 bits (157), Expect(4) = 6e-81
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 2/210 (0%)
Frame = +3
Query: 291 KIDWVFVNGDWLDIIEVCKVHFLSEGTSDNNLAHVTLVNSVPRKKKAFKYCNICSTHPEF 470
K+D NG+W + F G SD+ + + N P KK+FKY + S+HP +
Sbjct: 201 KLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILIDNQPPPSKKSFKYFSFLSSHPSY 260
Query: 471 LSIVEIG-SQQEVKGCKMYQVVRKLKMLKSQLRKLHSSDFNNLLNEV*KDRKNLLEVQAQ 647
L+ + + G M+ + + LK+ K R L+ F+N+ + L ++Q +
Sbjct: 261 LAALSTAWEANTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVE 320
Query: 648 LQVNPLDSDXXXXXXXXGRK-FNRSSYLAEVLLVQRSKAT*MKLGDDNTR*LHSILKKKK 824
L +P SD RK + + E Q+S+ + GD NTR H + +
Sbjct: 321 LLTSP--SDTLFRREHVARKQWIFFAAALESFFRQKSRIRWLHEGDANTRFFHRAVIAHQ 378
Query: 825 LQQSIYQLKNESQTMQHDPEVITGIFVRVY 914
I L+ + + + I G+ + Y
Sbjct: 379 ATNLIKFLRGDDGFRVENVDQIKGMLIAYY 408
Score = 39.3 bits (90), Expect(4) = 6e-81
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 5 NFWVTFVYAYNTKEERKELWEYLCQVHDGN--NFLPWMRLGDLNSILHMEDRV*GNNVTT 178
+F V FVY N++ +R+ LWE + + + + PW+ LGD N I + N
Sbjct: 101 SFAVAFVYGRNSELDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQ--- 157
Query: 179 AKLMDLQGRIDIVGCL 226
L++L+G D+ CL
Sbjct: 158 -SLLNLRGMEDLQCCL 172
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 197 bits (500), Expect(3) = 8e-80
Identities = 105/273 (38%), Positives = 162/273 (59%), Gaps = 2/273 (0%)
Frame = +1
Query: 1390 DLLRHYNR-KITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+++ YNR I+PR ++K+DL+KA+ +K F+ L+ P++++ I C+TT F+
Sbjct: 434 EMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFT 493
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
I VN + +F +GLRQGDP+S LFVL ME S++L +HP ++
Sbjct: 494 ISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSIS 553
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLL-A 1923
+L FADD +IF + +S+ + E L F++ +GL N DK L AGLD + +++ A
Sbjct: 554 HLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLD--LSERITSA 611
Query: 1924 LTGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVL 2103
GF G+FPIRYLGLPL RK + L K++ +R+ S+ S+AGR Q+I SV+
Sbjct: 612 AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVI 671
Query: 2104 FSLHNFWGAVFILHQSVLKEVDKLCRGFLWGNS 2202
F L NFW + F+L + +K+++ LC FLW S
Sbjct: 672 FGLINFWMSTFLLPKGCIKKIESLCSKFLWAGS 704
Score = 100 bits (249), Expect(3) = 8e-80
Identities = 51/129 (39%), Positives = 80/129 (62%)
Frame = +2
Query: 1007 LLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQ 1186
L K ++ E+K + NK+SG + FF+ TWSI G ++ AI E ++G++L Q
Sbjct: 303 LEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQ 362
Query: 1187 LNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSG 1366
N T++ LI K +N + + RPI+C N +YK ISK+L RL+ +L ++ +Q+AF+ G
Sbjct: 363 WNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPG 422
Query: 1367 RSLVHNVLI 1393
RSL NVL+
Sbjct: 423 RSLAENVLL 431
Score = 50.8 bits (120), Expect(3) = 8e-80
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 1/210 (0%)
Frame = +3
Query: 291 KIDWVFVNGDWLDIIEVCKVHFLSEGTSDNNLAHVTLVNSVPRKKKAFKYCNICSTHPEF 470
K+D + N W ++ F + SD+ V L + K+ FK+ N + +F
Sbjct: 62 KLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDF 121
Query: 471 LSIV-EIGSQQEVKGCKMYQVVRKLKMLKSQLRKLHSSDFNNLLNEV*KDRKNLLEVQAQ 647
L++V + V G MY+V +KLK +K ++ +++ + + + L+ Q
Sbjct: 122 LNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQNL 181
Query: 648 LQVNPLDSDXXXXXXXXGRKFNRSSYLAEVLLVQRSKAT*MKLGDDNTR*LHSILKKKKL 827
NP S+ RK+ S E QRS+ + GD NT H ++ +K
Sbjct: 182 TLANPSVSNAALELEAQ-RKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKS 240
Query: 828 QQSIYQLKNESQTMQHDPEVITGIFVRVYQ 917
+I L + + + + I V Y+
Sbjct: 241 FNTINSLVDSNGLLIDSQQGILDHCVTYYE 270
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 197 bits (500), Expect(3) = 8e-80
Identities = 105/273 (38%), Positives = 162/273 (59%), Gaps = 2/273 (0%)
Frame = +1
Query: 1390 DLLRHYNR-KITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+++ YNR I+PR ++K+DL+KA+ +K F+ L+ P++++ I C+TT F+
Sbjct: 434 EMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFT 493
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
I VN + +F +GLRQGDP+S LFVL ME S++L +HP ++
Sbjct: 494 ISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSIS 553
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLL-A 1923
+L FADD +IF + +S+ + E L F++ +GL N DK L AGLD + +++ A
Sbjct: 554 HLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLD--LSERITSA 611
Query: 1924 LTGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVL 2103
GF G+FPIRYLGLPL RK + L K++ +R+ S+ S+AGR Q+I SV+
Sbjct: 612 AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVI 671
Query: 2104 FSLHNFWGAVFILHQSVLKEVDKLCRGFLWGNS 2202
F L NFW + F+L + +K+++ LC FLW S
Sbjct: 672 FGLINFWMSTFLLPKGCIKKIESLCSKFLWAGS 704
Score = 100 bits (249), Expect(3) = 8e-80
Identities = 51/129 (39%), Positives = 80/129 (62%)
Frame = +2
Query: 1007 LLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQ 1186
L K ++ E+K + NK+SG + FF+ TWSI G ++ AI E ++G++L Q
Sbjct: 303 LEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQ 362
Query: 1187 LNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSG 1366
N T++ LI K +N + + RPI+C N +YK ISK+L RL+ +L ++ +Q+AF+ G
Sbjct: 363 WNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPG 422
Query: 1367 RSLVHNVLI 1393
RSL NVL+
Sbjct: 423 RSLAENVLL 431
Score = 50.8 bits (120), Expect(3) = 8e-80
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 1/210 (0%)
Frame = +3
Query: 291 KIDWVFVNGDWLDIIEVCKVHFLSEGTSDNNLAHVTLVNSVPRKKKAFKYCNICSTHPEF 470
K+D + N W ++ F + SD+ V L + K+ FK+ N + +F
Sbjct: 62 KLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDF 121
Query: 471 LSIV-EIGSQQEVKGCKMYQVVRKLKMLKSQLRKLHSSDFNNLLNEV*KDRKNLLEVQAQ 647
L++V + V G MY+V +KLK +K ++ +++ + + + L+ Q
Sbjct: 122 LNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQNL 181
Query: 648 LQVNPLDSDXXXXXXXXGRKFNRSSYLAEVLLVQRSKAT*MKLGDDNTR*LHSILKKKKL 827
NP S+ RK+ S E QRS+ + GD NT H ++ +K
Sbjct: 182 TLANPSVSNAALELEAQ-RKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKS 240
Query: 828 QQSIYQLKNESQTMQHDPEVITGIFVRVYQ 917
+I L + + + + I V Y+
Sbjct: 241 FNTINSLVDSNGLLIDSQQGILDHCVTYYE 270
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 186 bits (472), Expect(3) = 9e-79
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 1/269 (0%)
Frame = +1
Query: 1390 DLLRHYNRK-ITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+L++ Y+++ +TPRC MKID+ KA+ ++ FL L+ FP+ F I LC++T FS
Sbjct: 877 ELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFS 936
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
++VN +F RGLRQG +S LFV+ M LS ++D+ + +HP C+ LT
Sbjct: 937 VQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLT 996
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD ++F + ++ S++ V+ + F+ +GL + +K + +AG+ + + L+
Sbjct: 997 HLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSS 1056
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
FA G P+RYLGLPL ++ + L + I + +R SYAGR ++ SV+
Sbjct: 1057 FPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIV 1116
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLW 2193
S+ NFW + + L ++E++KLC FLW
Sbjct: 1117 SIANFWMSAYRLPAGCIREIEKLCSAFLW 1145
Score = 100 bits (250), Expect(3) = 9e-79
Identities = 56/129 (43%), Positives = 75/129 (58%)
Frame = +2
Query: 1007 LLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQ 1186
L + + +E++ LF + NKS G + S FFKATWS+TG D AI G +
Sbjct: 746 LTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKG 805
Query: 1187 LNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSG 1366
LN T +ALI K RPI+CCNV+YK ISK+L RLK +LP+ + Q+AFV
Sbjct: 806 LNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKE 865
Query: 1367 RSLVHNVLI 1393
R L+ NVL+
Sbjct: 866 RLLMENVLL 874
Score = 57.8 bits (138), Expect(3) = 9e-79
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 4/174 (2%)
Frame = +3
Query: 423 KKAFKYCNICSTHPEFLSIVEI----GSQQEVKGCKMYQVVRKLKMLKSQLRKLHSSDFN 590
+K FK+ N+ + P+FL +VE + V +Y+ +KLK LK LR+L
Sbjct: 545 RKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLG 604
Query: 591 NLLNEV*KDRKNLLEVQAQLQVNPLDSDXXXXXXXXGRKFNRSSYLAEVLLVQRSKAT*M 770
+L + L E QA NP + + S L E L Q+SK M
Sbjct: 605 DLPKRTREAHILLCEKQATTLANP-SQETIAEELKAYTDWTHLSELEEGFLKQKSKLHWM 663
Query: 771 KLGDDNTR*LHSILKKKKLQQSIYQLKNESQTMQHDPEVITGIFVRVYQCWVNQ 932
+GD N H + +K++ SI +++ + E I G R + ++N+
Sbjct: 664 NVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNR 717
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 204 bits (520), Expect(2) = 4e-77
Identities = 108/261 (41%), Positives = 160/261 (61%)
Frame = +1
Query: 1417 ITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFSIKVNAGSHDY 1596
I+ R ++K+DLRKA+ + F+ E L+ P +FV I C+T+T FSI V+ Y
Sbjct: 583 ISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGY 642
Query: 1597 FEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLTYLTFADDFII 1776
F+G +GLRQGDP+S LFV+ ME LSR+L+ S +HP +++ L FADD +I
Sbjct: 643 FKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMI 702
Query: 1777 FCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLALTGFAIGSFPI 1956
F + +S++ + L+ F ++GL NT+K + AGL++ K+ LA GF G+FP
Sbjct: 703 FYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTLAF-GFVNGTFPF 761
Query: 1957 RYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLFSLHNFWGAVF 2136
RYLGLPL RK + + QL KI + A++ S+AGR Q+I SV++S NFW + F
Sbjct: 762 RYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSF 821
Query: 2137 ILHQSVLKEVDKLCRGFLWGN 2199
IL + LK ++++C FLWGN
Sbjct: 822 ILPKCCLKTIEQMCNRFLWGN 842
Score = 113 bits (282), Expect(2) = 4e-77
Identities = 53/124 (42%), Positives = 79/124 (63%)
Frame = +2
Query: 1022 SRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQLNTTS 1201
S ++K+ F + NKS G + S FFK TWSI G + A+ E +G++L Q N+T+
Sbjct: 447 SEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTA 506
Query: 1202 IALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSGRSLVH 1381
+ ++ K N + + RPI+CCN IYK ISK+L RRL+ +LP ++ +Q+AFV GR L
Sbjct: 507 VTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTE 566
Query: 1382 NVLI 1393
NVL+
Sbjct: 567 NVLL 570
Score = 63.5 bits (153), Expect(2) = 7e-12
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 1/191 (0%)
Frame = +3
Query: 291 KIDWVFVNGDWLDIIEVCKVHFLSEGTSDNNLAHVTLVNSVPRKKKAFKYCNICSTHPEF 470
KID + VN WL + F + SD+ + V + N + K FK N HPEF
Sbjct: 200 KIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEF 259
Query: 471 LSIVEI-GSQQEVKGCKMYQVVRKLKMLKSQLRKLHSSDFNNLLNEV*KDRKNLLEVQAQ 647
+ + + + +G M+ + +K K LK +R + ++ L V + +NL Q
Sbjct: 260 IEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNN 319
Query: 648 LQVNPLDSDXXXXXXXXGRKFNRSSYLAEVLLVQRSKAT*MKLGDDNTR*LHSILKKKKL 827
L P S R + + E L Q+S+ +K GD NT H ++ ++
Sbjct: 320 LLAAP-SSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRA 378
Query: 828 QQSIYQLKNES 860
I+ L +++
Sbjct: 379 INEIHYLLDQT 389
Score = 35.8 bits (81), Expect(2) = 7e-12
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 8 FWVTFVYAYNTKEERKELWE--YLCQVHDGNNFLPWMRLGDLNSILHMEDRV*GNNVTT 178
F VTFVYA N + R+ LW L + + PW+ LGD N L D G + T
Sbjct: 103 FVVTFVYAVNCRYGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRIT 161
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 206 bits (524), Expect(2) = 6e-76
Identities = 101/273 (36%), Positives = 168/273 (61%), Gaps = 1/273 (0%)
Frame = +1
Query: 1390 DLLRHYNRK-ITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+L++ Y++ I+ RC +KID+ KA+ ++ FL + GFP++F+ I +C+TT FS
Sbjct: 580 ELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFS 639
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
++VN YF+ RGLRQG +S LFV+ M+ LS++LDK + F +HP CK LT
Sbjct: 640 VQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLT 699
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L+FADD ++ + S++R+++ F++ +GL + +K + +AGL ++++
Sbjct: 700 HLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADR 759
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
F+ G P+RYLGLPL ++ + +C L ++ I + SR SYAGR +I SVL+
Sbjct: 760 FPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLW 819
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGNSE 2205
S+ NFW A F L + ++E++K+C FLW +E
Sbjct: 820 SICNFWLAAFRLPRKCIRELEKMCSAFLWSGTE 852
Score = 107 bits (268), Expect(2) = 6e-76
Identities = 55/132 (41%), Positives = 79/132 (59%)
Frame = +2
Query: 998 QVGLLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKM 1177
Q L++P + +E++ LF + +KS G + S FFKATW I GD+ T A+ G +
Sbjct: 446 QQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFL 505
Query: 1178 LHQLNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAF 1357
+N+T +ALI K T RPI+CCNV+YK ISK++ RLK VLP + Q+AF
Sbjct: 506 PKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAF 565
Query: 1358 VSGRSLVHNVLI 1393
V R L+ N+L+
Sbjct: 566 VKDRLLIENLLL 577
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 190 bits (483), Expect(2) = 2e-75
Identities = 104/271 (38%), Positives = 159/271 (58%), Gaps = 1/271 (0%)
Frame = +1
Query: 1390 DLLRHYNRK-ITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+L+ YN+K I P ++K+DLRKA+ ++ F+ L+ P+KF I+ C++T FS
Sbjct: 471 ELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFS 530
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
+ +N S +F +GLRQGDP+S LFVL ME S +L + +HP +++
Sbjct: 531 VILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEIS 590
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD +IF + +S+ ++E+L+ F+ +GL+ NT+K L AGL + D +A
Sbjct: 591 HLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDS-MAS 649
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
GF +GS P+RYLGLPL RK E L KIT + R S+AGR Q++ SV+
Sbjct: 650 YGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVIS 709
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGN 2199
+ NFW + FIL +K+++ LC FLW +
Sbjct: 710 GIVNFWISSFILPLGCIKKIESLCSRFLWSS 740
Score = 122 bits (305), Expect(2) = 2e-75
Identities = 61/133 (45%), Positives = 84/133 (63%)
Frame = +2
Query: 995 QQVGLLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGK 1174
QQV L P+S +++KN F + NK+SG F FF A W I G ++TEAI E +GK
Sbjct: 336 QQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGK 395
Query: 1175 MLHQLNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAA 1354
+L Q N T++ LI K+TN S RPI+C N +YK ISK+L RLK LP ++ +Q+A
Sbjct: 396 LLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSA 455
Query: 1355 FVSGRSLVHNVLI 1393
F+ GR + NVL+
Sbjct: 456 FMPGRLFLENVLL 468
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 206 bits (524), Expect(2) = 5e-72
Identities = 106/273 (38%), Positives = 163/273 (59%), Gaps = 1/273 (0%)
Frame = +1
Query: 1390 DLLRHYNR-KITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+L++ Y++ I+ RC +KID+ KA+ ++ FL L F F+ I LC+TT FS
Sbjct: 227 ELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFS 286
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
++VN YF+ +RGLRQG +S LFV+ M+ LS++LDK + F FHP C+ LT
Sbjct: 287 VQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLGLT 346
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L+FADD ++ + S++ ++E F + +GL + +K L +AG+ +K ++ A
Sbjct: 347 HLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAK 406
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
F +G P+RYLGLPL ++ + L +I I R FS+AGRF +I+SVL+
Sbjct: 407 FLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLW 466
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGNSE 2205
S+ NFW A F L + ++E+DKLC FLW SE
Sbjct: 467 SICNFWLAAFRLPRQCIREIDKLCSSFLWSGSE 499
Score = 94.7 bits (234), Expect(2) = 5e-72
Identities = 49/129 (37%), Positives = 74/129 (57%)
Frame = +2
Query: 1007 LLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQ 1186
L + S +E+K LF + +KS G + S F+KATW I G + T + G +
Sbjct: 96 LTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKG 155
Query: 1187 LNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSG 1366
+N+ +ALI K + RPI+CCNV+YK ISK++ RLK +LP + + Q+AFV
Sbjct: 156 INSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKD 215
Query: 1367 RSLVHNVLI 1393
R L+ N+L+
Sbjct: 216 RLLIENLLL 224
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 199 bits (505), Expect(2) = 6e-72
Identities = 107/274 (39%), Positives = 160/274 (58%), Gaps = 2/274 (0%)
Frame = +1
Query: 1390 DLLRHYN-RKITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
DL+ YN I+PR ++K+DL+KA+ ++ F+ L+ P+KF+ I C++T F+
Sbjct: 574 DLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFT 633
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
+ +N G+ +F+ +GLRQGDP+S LFVL ME S +L +HP ++
Sbjct: 634 VSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSIS 693
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD +IF + S+ + E L F+ +GL N DK +L +AGL+ +++ A
Sbjct: 694 HLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLN-QLESNANAA 752
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
GF IG+ PIRYLGLPL RK E L KIT R+ ++ S+AGR Q+I SV+F
Sbjct: 753 YGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIF 812
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLW-GNSE 2205
NFW + F+L + +K ++ LC FLW GN E
Sbjct: 813 GSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIE 846
Score = 101 bits (252), Expect(2) = 6e-72
Identities = 50/125 (40%), Positives = 79/125 (63%)
Frame = +2
Query: 1019 YSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQLNTT 1198
+S ++++ LF + NKS G F + FF +WSI G ++T+AI E ++G +L Q N T
Sbjct: 447 FSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNAT 506
Query: 1199 SIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSGRSLV 1378
+I LI K+ N RPI+C N +YK I+++L RL+ +L +++ Q+AF+ GRSL
Sbjct: 507 TIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLA 566
Query: 1379 HNVLI 1393
NVL+
Sbjct: 567 ENVLL 571
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 199 bits (507), Expect(2) = 1e-71
Identities = 103/273 (37%), Positives = 159/273 (58%), Gaps = 1/273 (0%)
Frame = +1
Query: 1390 DLLRHYNR-KITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+L++ Y++ I+PRC MKID+ KA+ ++ FL L+ FP+ F I LC++T FS
Sbjct: 153 ELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFS 212
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
++VN +F +RGLRQG +S LFV+ M LS ++D + +HP CK LT
Sbjct: 213 VQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLT 272
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD ++F + + SV+ V+ + F+ +GL + +K L +AG+ E ++ +L+
Sbjct: 273 HLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSA 332
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
FA G P+RYLGLPL ++ + L K+ I + +R SYAGR +I SV+
Sbjct: 333 FPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIV 392
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGNSE 2205
SL NFW + + L +KE++KLC FLW E
Sbjct: 393 SLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPE 425
Score = 100 bits (248), Expect(2) = 1e-71
Identities = 57/129 (44%), Positives = 73/129 (56%)
Frame = +2
Query: 1007 LLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQ 1186
L + + +E + LF + NK G + S FFKATWSITG D AI G +
Sbjct: 22 LTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKG 81
Query: 1187 LNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSG 1366
LN T +ALI K RPI+CCNVIYK ISK++ RLK +LPT + Q+AFV
Sbjct: 82 LNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRE 141
Query: 1367 RSLVHNVLI 1393
R L+ NVL+
Sbjct: 142 RLLIENVLL 150
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 144 bits (363), Expect(4) = 9e-71
Identities = 77/224 (34%), Positives = 124/224 (55%)
Frame = +1
Query: 1420 TPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFSIKVNAGSHDYF 1599
T R +++D+ KAY + FL +L+ P F+ I +C+++ +SI N +F
Sbjct: 628 TTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFF 687
Query: 1600 EGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLTYLTFADDFIIF 1779
+G++G+RQGDP+SS LFVLVM+ LS+ LD F HP C +T+L+FADD ++F
Sbjct: 688 QGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVF 747
Query: 1780 CNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLALTGFAIGSFPIR 1959
+ +S+ ++ L F + +GL N +K L + G + L G GS P+R
Sbjct: 748 SDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVR 807
Query: 1960 YLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVI 2091
YLG+PL +K + + L +I + +RH S+AGR Q++
Sbjct: 808 YLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLL 851
Score = 89.0 bits (219), Expect(4) = 9e-71
Identities = 47/124 (37%), Positives = 65/124 (52%)
Frame = +2
Query: 1022 SRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQLNTTS 1201
S +E+ LF + NK+ G F FF W+I + AI E +G + N T+
Sbjct: 491 SEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATA 550
Query: 1202 IALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSGRSLVH 1381
I LI KVT + Q RP+ACC IYK I++++ RRLK + V Q F+ GR L
Sbjct: 551 ITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCE 610
Query: 1382 NVLI 1393
NVL+
Sbjct: 611 NVLL 614
Score = 66.2 bits (160), Expect(4) = 9e-71
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 2/210 (0%)
Frame = +3
Query: 291 KIDWVFVNGDWLDIIEVCKVHFLSEGTSDNNLAHVTLVNSVPRKKKAFKYCNICSTHPEF 470
K+D NG+W + F G SD+ + + N P KK+FKY + S+HP +
Sbjct: 244 KLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILIDNQPPPSKKSFKYFSFLSSHPSY 303
Query: 471 LSIVEIG-SQQEVKGCKMYQVVRKLKMLKSQLRKLHSSDFNNLLNEV*KDRKNLLEVQAQ 647
L+ + + + G M+ + + LK+ K R L+ F+N+ + L ++Q +
Sbjct: 304 LAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVE 363
Query: 648 LQVNPLDSDXXXXXXXXGRK-FNRSSYLAEVLLVQRSKAT*MKLGDDNTR*LHSILKKKK 824
L +P SD RK + + E Q+S+ + GD NTR H + +
Sbjct: 364 LLTSP--SDTLFRREHVARKQWIFFAAALESFFRQKSRIRWLHEGDANTRFFHRAVIAHQ 421
Query: 825 LQQSIYQLKNESQTMQHDPEVITGIFVRVY 914
I L+ + + + I G+ + Y
Sbjct: 422 ATNLIKFLRGDDGFRVENVDQIKGMLIAYY 451
Score = 39.3 bits (90), Expect(4) = 9e-71
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 5 NFWVTFVYAYNTKEERKELWEYLCQVHDGN--NFLPWMRLGDLNSILHMEDRV*GNNVTT 178
+F V FVY N++ +R+ LWE + + + + PW+ LGD N I + N
Sbjct: 144 SFAVAFVYGRNSELDRRSLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQ--- 200
Query: 179 AKLMDLQGRIDIVGCL 226
L++L+G D+ CL
Sbjct: 201 -SLLNLRGMEDLQCCL 215
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 195 bits (496), Expect(2) = 4e-69
Identities = 98/261 (37%), Positives = 154/261 (59%), Gaps = 1/261 (0%)
Frame = +1
Query: 1423 PRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFSIKVNAGSHDYFE 1602
PRC +D+ KA ++ F+ LQ + P + I C+++ KFS+ VN +F
Sbjct: 413 PRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFFA 472
Query: 1603 GERGLRQGDPISSLLFVLVMEYLSRVLDK-MESLPDFRFHPICKVQKLTYLTFADDFIIF 1779
RGLRQGDP+S LFV+ ME LS + + + P FR+H C L++L FADD ++F
Sbjct: 473 RRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQLNLSHLCFADDLLMF 532
Query: 1780 CNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLALTGFAIGSFPIR 1959
CN +E SV+ + +A +F ++ L AN + + +AG+D D +L +T F++G+ P+R
Sbjct: 533 CNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVR 592
Query: 1960 YLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLFSLHNFWGAVFI 2139
YLG+PL K +C L +I I++ ++ S+AGR Q+IQSVL S+ +W + I
Sbjct: 593 YLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLI 652
Query: 2140 LHQSVLKEVDKLCRGFLWGNS 2202
L + VLK+++K R FLW +
Sbjct: 653 LPKKVLKDIEKRLRCFLWAGN 673
Score = 95.9 bits (237), Expect(2) = 4e-69
Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Frame = +2
Query: 1007 LLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEA-ILETLNAGKMLH 1183
L ++ +++ F +N NKS G F FF+ W + GD++ A + E + G +L
Sbjct: 269 LCNEFTHDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLM 328
Query: 1184 QLNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVS 1363
+LN+T I L+ KV N + RPI+CCN YK I+K+L RLK L +V +Q+ F+
Sbjct: 329 ELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIP 388
Query: 1364 GRSLVHNVLIY*GIIIE 1414
GR + N+L+ II +
Sbjct: 389 GRRIGDNILLAQEIICD 405
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 184 bits (467), Expect(2) = 1e-68
Identities = 104/272 (38%), Positives = 159/272 (58%), Gaps = 1/272 (0%)
Frame = +1
Query: 1390 DLLRHYNRK-ITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+++ YN K I+ R ++K+DLRKA+ ++ F+ + P+KFV I C++T FS
Sbjct: 575 EIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFS 634
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
+ VN S +F+ +GLRQGDP+S LFVL ME S +L ++HP ++
Sbjct: 635 VMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSIS 694
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD ++F + +S+ + EAL F+ +GL N DK NL +AG D E++ ++
Sbjct: 695 HLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTD-EVEALAISH 753
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
GF I + PIRYLGLPL RK K+ ++L + R+ A + S+AGR Q+I SV+
Sbjct: 754 YGFPISTLPIRYLGLPLMSRKL-KISEYELVKR----FRSWAVKSLSFAGRVQLITSVIT 808
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGNS 2202
L NFW + F+L +K+++ LC FLW S
Sbjct: 809 GLVNFWMSTFVLLLGCVKKIESLCSRFLWSGS 840
Score = 105 bits (262), Expect(2) = 1e-68
Identities = 51/136 (37%), Positives = 84/136 (61%)
Frame = +2
Query: 986 TLEQQVGLLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLN 1165
+++Q L + +S +++ F + NK+SG + S FFK W + G ++TEA+ E
Sbjct: 437 SVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFR 496
Query: 1166 AGKMLHQLNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDT 1345
+G++L Q N T++ LI K+TN RPI+C N +YK I+K+L RLK +L +++ +
Sbjct: 497 SGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPS 556
Query: 1346 QAAFVSGRSLVHNVLI 1393
Q+AF+ GR L NVL+
Sbjct: 557 QSAFLPGRLLSENVLL 572
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 184 bits (466), Expect(2) = 1e-68
Identities = 104/272 (38%), Positives = 158/272 (58%), Gaps = 1/272 (0%)
Frame = +1
Query: 1390 DLLRHYNRK-ITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+++ YN K I+ R ++K+DLRKA+ ++ F+ + P+KFV I C++T FS
Sbjct: 575 EIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFS 634
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
+ VN S +F+ +GLRQGDP+S LFVL ME S +L +HP ++
Sbjct: 635 VMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSIS 694
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD ++F + +S+ + EAL F+ +GL N DK NL +AG D E++ ++
Sbjct: 695 HLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTD-EVEALAISH 753
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
GF I + PIRYLGLPL RK K+ ++L + R+ A + S+AGR Q+I SV+
Sbjct: 754 YGFPISTLPIRYLGLPLMSRKL-KISEYELVKR----FRSWAVKSLSFAGRVQLITSVIT 808
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGNS 2202
L NFW + F+L +K+++ LC FLW S
Sbjct: 809 GLVNFWMSTFVLLLGCVKKIESLCSRFLWSGS 840
Score = 105 bits (262), Expect(2) = 1e-68
Identities = 51/136 (37%), Positives = 84/136 (61%)
Frame = +2
Query: 986 TLEQQVGLLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLN 1165
+++Q L + +S +++ F + NK+SG + S FFK W + G ++TEA+ E
Sbjct: 437 SVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFR 496
Query: 1166 AGKMLHQLNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDT 1345
+G++L Q N T++ LI K+TN RPI+C N +YK I+K+L RLK +L +++ +
Sbjct: 497 SGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPS 556
Query: 1346 QAAFVSGRSLVHNVLI 1393
Q+AF+ GR L NVL+
Sbjct: 557 QSAFLPGRLLSENVLL 572
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 195 bits (495), Expect(2) = 2e-68
Identities = 102/272 (37%), Positives = 163/272 (59%), Gaps = 1/272 (0%)
Frame = +1
Query: 1390 DLLRHYNR-KITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
DL++ Y++ I+ RC +KID+ KA ++ FL L FP+ F+ I LC+TT FS
Sbjct: 133 DLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFS 192
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
++VN +F+ RGLRQG +S LFV+ M+ LS++LDK+ + +HP CK LT
Sbjct: 193 VQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKRMGLT 252
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L+FADD +I + S++ ++E FS+ +GL + +K + AGL + +L
Sbjct: 253 HLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLHTH 312
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
F +G PIRYLGLPL ++ + ++ L +I I + +SR S+AGRF +I S+++
Sbjct: 313 FPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIW 372
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGNS 2202
S NFW + F L ++ ++E++KLC FLW +
Sbjct: 373 SSCNFWLSAFQLPRACIQEIEKLCSSFLWSGT 404
Score = 93.6 bits (231), Expect(2) = 2e-68
Identities = 52/129 (40%), Positives = 73/129 (56%)
Frame = +2
Query: 1007 LLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQ 1186
L + S +E+K LF + +KS G F S FFK +W I G + AI G +
Sbjct: 2 LTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKG 61
Query: 1187 LNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSG 1366
+N+T +ALI K + RPI+CCNV+YK ISK+L RLK +LP + Q++FV
Sbjct: 62 VNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKD 121
Query: 1367 RSLVHNVLI 1393
R L+ NVL+
Sbjct: 122 RLLIENVLL 130
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 189 bits (481), Expect(2) = 9e-68
Identities = 101/273 (36%), Positives = 154/273 (56%), Gaps = 1/273 (0%)
Frame = +1
Query: 1390 DLLRHYNR-KITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+L++ Y++ I+ RC MKID+ KA+ ++ FL +L FP +F+ I LC++T FS
Sbjct: 301 ELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFS 360
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
I+VN YF RGLRQG +S LFV+ M+ LSR+LDK +F +HP CK LT
Sbjct: 361 IQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLT 420
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD +I + SV +++ L F+ GL +K L +AG+ + + + +
Sbjct: 421 HLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSR 480
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
F +G P+RYLGLPL ++ + L +I I SR+ S+AGR +I SVL+
Sbjct: 481 YSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLW 540
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGNSE 2205
S+ NFW F L + + E++++ LW E
Sbjct: 541 SITNFWMNAFRLPRECINEINRISSALLWSGPE 573
Score = 97.1 bits (240), Expect(2) = 9e-68
Identities = 51/129 (39%), Positives = 75/129 (58%)
Frame = +2
Query: 1007 LLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQ 1186
L + + +E+K +F + +KS G + S F+KA+W I GD++ AI G +
Sbjct: 170 LTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKG 229
Query: 1187 LNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSG 1366
+N+T +ALI K RPI+CCNV+YK ISK+L RLK +LP + Q+AFV
Sbjct: 230 VNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKD 289
Query: 1367 RSLVHNVLI 1393
R L+ NVL+
Sbjct: 290 RLLIENVLL 298
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 196 bits (498), Expect(2) = 4e-67
Identities = 97/273 (35%), Positives = 160/273 (58%), Gaps = 1/273 (0%)
Frame = +1
Query: 1390 DLLRHYNR-KITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
++++ Y++ ++ RC +KID+ KA+ ++ FL +L+ FP +F I LC+TT FS
Sbjct: 468 EIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFS 527
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
++VN F R LRQG +S LFV+ M+ LS++LDK F +HP C+ LT
Sbjct: 528 VQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLT 587
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L+FADD +I + S+ +++ L F++ +GL + +K + +AG+ + +++
Sbjct: 588 HLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQK 647
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
F +G P+RYLGLPL ++ +C L ++ I SR S+AGR +I S L+
Sbjct: 648 FSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLW 707
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGNSE 2205
S+ NFW A F L ++ ++E+DKLC FLW +E
Sbjct: 708 SICNFWMAAFRLPRACIREIDKLCSAFLWSGTE 740
Score = 88.2 bits (217), Expect(2) = 4e-67
Identities = 47/124 (37%), Positives = 70/124 (56%)
Frame = +2
Query: 1022 SRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLNAGKMLHQLNTTS 1201
S +E+ +F + +KS G + + F+K W+I G + AI G + +N+T
Sbjct: 342 SAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTI 401
Query: 1202 IALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDTQAAFVSGRSLVH 1381
+ALI K + RPI+CCNV+YK ISK++ RLK VLP + Q+AFV R L+
Sbjct: 402 LALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIE 461
Query: 1382 NVLI 1393
NVL+
Sbjct: 462 NVLL 465
Score = 62.0 bits (149), Expect(2) = 1e-11
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 7/193 (3%)
Frame = +3
Query: 291 KIDWVFVNGDWLDIIEVCKVHFLSEGTSDNNLAHVTL---VNSVPRKKKAFKYCNICSTH 461
K+D V VN WL F + G SD+ + L +V + K+ FK+ N+ +
Sbjct: 89 KLDRVLVNDVWLQSFPRSYSVFEAGGCSDHLRCRINLNVGAGAVVKGKRPFKFVNVITEM 148
Query: 462 PEFLSIVEIGSQQE----VKGCKMYQVVRKLKMLKSQLRKLHSSDFNNLLNEV*KDRKNL 629
F+ VE + + +++ +KLK LK LR L NL+ + + + L
Sbjct: 149 EHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGLKPLLRNLGKERLGNLVKQTKEAFETL 208
Query: 630 LEVQAQLQVNPLDSDXXXXXXXXGRKFNRSSYLAEVLLVQRSKAT*MKLGDDNTR*LHSI 809
+ QA NP S K++ + L E L QRSK + +GD N + H
Sbjct: 209 CQKQAMKMANPSPSSMQEENEAYA-KWDHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRA 267
Query: 810 LKKKKLQQSIYQL 848
+ ++ Q SI ++
Sbjct: 268 VVAREAQNSIREI 280
Score = 36.6 bits (83), Expect(2) = 1e-11
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 44 EERKELWEYLCQVHDGN--NFLPWMRLGDLNSILHMEDRV*G--NNVTTAKLMDLQ 199
EERKELW L D PW+ GD N IL ME+ N VTT + D Q
Sbjct: 2 EERKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQ 57
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 180 bits (456), Expect(2) = 2e-66
Identities = 99/273 (36%), Positives = 155/273 (56%), Gaps = 1/273 (0%)
Frame = +1
Query: 1390 DLLRHYNRK-ITPRCLMKIDLRKAYGMIKGYFLEEMLQGYGFPKKFVQLIMLCVTTTKFS 1566
+L++ Y++ ++PRC MKIDL KA+ ++ FL L P+KF+ I LC++T FS
Sbjct: 846 ELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFS 905
Query: 1567 IKVNAGSHDYFEGERGLRQGDPISSLLFVLVMEYLSRVLDKMESLPDFRFHPICKVQKLT 1746
++VN GLRQG +S LFV+ M LS +LDK F +HP C+ LT
Sbjct: 906 VQVN-----------GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLT 954
Query: 1747 YLTFADDFIIFCNANETSVKRVMEALQHFSEITGLVANTDKPNLKIAGLDEEMKDKLLAL 1926
+L FADD ++F + S++ V+ + F+ +GL + +K L +A + E +LA
Sbjct: 955 HLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILAR 1014
Query: 1927 TGFAIGSFPIRYLGLPLSPRKWNKLECHQLCMKITDGIRNAASRHFSYAGRFQVIQSVLF 2106
F GS P+RYLGLPL ++ +C L KI I + +R SYAGR Q++ SV+
Sbjct: 1015 FPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVIS 1074
Query: 2107 SLHNFWGAVFILHQSVLKEVDKLCRGFLWGNSE 2205
SL FW + F L ++ ++E++++ FLW ++
Sbjct: 1075 SLTKFWISAFRLPRACIREIEQISAAFLWSGTD 1107
Score = 102 bits (254), Expect(2) = 2e-66
Identities = 55/136 (40%), Positives = 79/136 (58%)
Frame = +2
Query: 986 TLEQQVGLLKPYSRKEVKNNLFGININKSSGTTKFESGFFKATWSITGDDITEAILETLN 1165
+L +Q L+ + EV F I +NKS G + FF+ TWS+ G ++T AI
Sbjct: 708 SLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFT 767
Query: 1166 AGKMLHQLNTTSIALISKVTNLESAGQIRPIACCNVIYKCISKMLYRRLK*VLPTLVNDT 1345
G + LN+T +ALI K T + RPI+CCNV+YK ISK+L RLK +LP +
Sbjct: 768 YGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPN 827
Query: 1346 QAAFVSGRSLVHNVLI 1393
Q+AF+S R L+ N+L+
Sbjct: 828 QSAFISDRLLMENLLL 843