BLASTX nr result
ID: Atropa21_contig00024842
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00024842
(463 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006339925.1| PREDICTED: regulator of nonsense transcripts... 160 2e-37
ref|XP_006339922.1| PREDICTED: regulator of nonsense transcripts... 160 2e-37
ref|XP_004248850.1| PREDICTED: uncharacterized protein LOC101263... 158 6e-37
ref|XP_004230442.1| PREDICTED: uncharacterized protein LOC101264... 139 5e-31
ref|XP_006349314.1| PREDICTED: regulator of nonsense transcripts... 138 9e-31
gb|EOX97032.1| Smg-4/UPF3 family protein, putative isoform 2, pa... 134 1e-29
gb|EOX97031.1| Smg-4/UPF3 family protein, putative isoform 1 [Th... 134 1e-29
ref|XP_002526435.1| conserved hypothetical protein [Ricinus comm... 127 2e-27
ref|XP_006385051.1| hypothetical protein POPTR_0004s23450g [Popu... 125 4e-27
ref|XP_002328787.1| predicted protein [Populus trichocarpa] gi|5... 125 4e-27
gb|EOY26875.1| Smg-4/UPF3 family protein, putative isoform 6 [Th... 124 1e-26
gb|EOY26874.1| Smg-4/UPF3 family protein, putative isoform 5 [Th... 124 1e-26
gb|EOY26871.1| Smg-4/UPF3 family protein, putative isoform 2 [Th... 124 1e-26
gb|EOY26870.1| Smg-4/UPF3 family protein, putative isoform 1 [Th... 124 1e-26
ref|XP_002264276.2| PREDICTED: regulator of nonsense transcripts... 124 1e-26
emb|CBI29694.3| unnamed protein product [Vitis vinifera] 124 1e-26
gb|EXB88206.1| hypothetical protein L484_011635 [Morus notabilis] 124 2e-26
gb|EMJ23015.1| hypothetical protein PRUPE_ppa004923mg [Prunus pe... 123 3e-26
gb|EMJ23014.1| hypothetical protein PRUPE_ppa004923mg [Prunus pe... 123 3e-26
ref|XP_006598794.1| PREDICTED: regulator of nonsense transcripts... 122 4e-26
>ref|XP_006339925.1| PREDICTED: regulator of nonsense transcripts UPF3-like isoform X4
[Solanum tuberosum]
Length = 482
Score = 160 bits (405), Expect = 2e-37
Identities = 76/85 (89%), Positives = 80/85 (94%)
Frame = -3
Query: 257 MKNQRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRN 78
MKN+RTKVVLRHLPPTLSQSML+EHVDSRFAGRYN FTFRP KTSL HQSYS+AYIDFRN
Sbjct: 1 MKNRRTKVVLRHLPPTLSQSMLLEHVDSRFAGRYNWFTFRPAKTSLKHQSYSKAYIDFRN 60
Query: 77 TEDVIEFAEFFDGHVFVNEKGTQFK 3
EDV EFAEFFDGH+FVNEKGTQFK
Sbjct: 61 MEDVTEFAEFFDGHMFVNEKGTQFK 85
>ref|XP_006339922.1| PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1
[Solanum tuberosum] gi|565345688|ref|XP_006339923.1|
PREDICTED: regulator of nonsense transcripts UPF3-like
isoform X2 [Solanum tuberosum]
gi|565345690|ref|XP_006339924.1| PREDICTED: regulator of
nonsense transcripts UPF3-like isoform X3 [Solanum
tuberosum]
Length = 508
Score = 160 bits (405), Expect = 2e-37
Identities = 76/85 (89%), Positives = 80/85 (94%)
Frame = -3
Query: 257 MKNQRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRN 78
MKN+RTKVVLRHLPPTLSQSML+EHVDSRFAGRYN FTFRP KTSL HQSYS+AYIDFRN
Sbjct: 1 MKNRRTKVVLRHLPPTLSQSMLLEHVDSRFAGRYNWFTFRPAKTSLKHQSYSKAYIDFRN 60
Query: 77 TEDVIEFAEFFDGHVFVNEKGTQFK 3
EDV EFAEFFDGH+FVNEKGTQFK
Sbjct: 61 MEDVTEFAEFFDGHMFVNEKGTQFK 85
>ref|XP_004248850.1| PREDICTED: uncharacterized protein LOC101263168 [Solanum
lycopersicum]
Length = 438
Score = 158 bits (400), Expect = 6e-37
Identities = 75/85 (88%), Positives = 79/85 (92%)
Frame = -3
Query: 257 MKNQRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRN 78
MKN+RTKVVLRHLPPTLSQSML+EHVDSRFAGRYN F FRP KTSL HQSYS+AYIDFRN
Sbjct: 1 MKNRRTKVVLRHLPPTLSQSMLLEHVDSRFAGRYNWFNFRPAKTSLKHQSYSKAYIDFRN 60
Query: 77 TEDVIEFAEFFDGHVFVNEKGTQFK 3
EDV EFAEFFDGH+FVNEKGTQFK
Sbjct: 61 MEDVTEFAEFFDGHMFVNEKGTQFK 85
>ref|XP_004230442.1| PREDICTED: uncharacterized protein LOC101264766 [Solanum
lycopersicum]
Length = 485
Score = 139 bits (349), Expect = 5e-31
Identities = 65/81 (80%), Positives = 73/81 (90%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
R+KVVLRHLPPT+SQSML++ VDSRFAGRYN F F PGK+S HQ+YSRAYI+F+ EDV
Sbjct: 7 RSKVVLRHLPPTISQSMLLDQVDSRFAGRYNWFCFLPGKSSQKHQTYSRAYIEFKRPEDV 66
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
IEFAEFFDGHVFVNEKGTQFK
Sbjct: 67 IEFAEFFDGHVFVNEKGTQFK 87
>ref|XP_006349314.1| PREDICTED: regulator of nonsense transcripts UPF3-like [Solanum
tuberosum]
Length = 483
Score = 138 bits (347), Expect = 9e-31
Identities = 65/81 (80%), Positives = 73/81 (90%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
R+KVVLRHLPPT+SQSML++ VDSRFAGRYN F F PGK+S HQ+YSRAYI+F+ EDV
Sbjct: 7 RSKVVLRHLPPTISQSMLLDQVDSRFAGRYNWFCFLPGKSSQKHQTYSRAYIEFKMPEDV 66
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
IEFAEFFDGHVFVNEKGTQFK
Sbjct: 67 IEFAEFFDGHVFVNEKGTQFK 87
>gb|EOX97032.1| Smg-4/UPF3 family protein, putative isoform 2, partial [Theobroma
cacao]
Length = 440
Score = 134 bits (337), Expect = 1e-29
Identities = 60/81 (74%), Positives = 73/81 (90%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
RTKV+LRHLPP ++++MLVE VD+ F+GRYN +FRPGK+S HQSYSRAYIDF+ +EDV
Sbjct: 7 RTKVILRHLPPAITEAMLVEQVDTAFSGRYNWLSFRPGKSSQKHQSYSRAYIDFKRSEDV 66
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
+EFAEFF+GHVFVNEKGTQFK
Sbjct: 67 LEFAEFFNGHVFVNEKGTQFK 87
>gb|EOX97031.1| Smg-4/UPF3 family protein, putative isoform 1 [Theobroma cacao]
Length = 514
Score = 134 bits (337), Expect = 1e-29
Identities = 60/81 (74%), Positives = 73/81 (90%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
RTKV+LRHLPP ++++MLVE VD+ F+GRYN +FRPGK+S HQSYSRAYIDF+ +EDV
Sbjct: 7 RTKVILRHLPPAITEAMLVEQVDTAFSGRYNWLSFRPGKSSQKHQSYSRAYIDFKRSEDV 66
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
+EFAEFF+GHVFVNEKGTQFK
Sbjct: 67 LEFAEFFNGHVFVNEKGTQFK 87
>ref|XP_002526435.1| conserved hypothetical protein [Ricinus communis]
gi|223534215|gb|EEF35930.1| conserved hypothetical
protein [Ricinus communis]
Length = 472
Score = 127 bits (318), Expect = 2e-27
Identities = 57/82 (69%), Positives = 70/82 (85%)
Frame = -3
Query: 248 QRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTED 69
++TKVV+RHLPPT+SQ +E +D F+GRYN +FRPGK+S HQSYSRAYIDF+ ED
Sbjct: 7 EKTKVVVRHLPPTISQGSFLEQIDVVFSGRYNWVSFRPGKSSQKHQSYSRAYIDFKRPED 66
Query: 68 VIEFAEFFDGHVFVNEKGTQFK 3
VIEFAEFF+GH+FVNEKGTQF+
Sbjct: 67 VIEFAEFFNGHLFVNEKGTQFR 88
>ref|XP_006385051.1| hypothetical protein POPTR_0004s23450g [Populus trichocarpa]
gi|550341819|gb|ERP62848.1| hypothetical protein
POPTR_0004s23450g [Populus trichocarpa]
Length = 520
Score = 125 bits (315), Expect = 4e-27
Identities = 56/84 (66%), Positives = 69/84 (82%)
Frame = -3
Query: 254 KNQRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNT 75
++ +TKVV+RHLPP +SQ M VE +D F+GRYN ++RPG S HQSYSRAYIDF+
Sbjct: 6 QSDKTKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNSQKHQSYSRAYIDFKRP 65
Query: 74 EDVIEFAEFFDGHVFVNEKGTQFK 3
EDVI+FAEFF+GH+FVNEKGTQFK
Sbjct: 66 EDVIDFAEFFNGHIFVNEKGTQFK 89
>ref|XP_002328787.1| predicted protein [Populus trichocarpa]
gi|566168252|ref|XP_006385052.1| Smg-4/UPF3 family
protein [Populus trichocarpa]
gi|550341820|gb|ERP62849.1| Smg-4/UPF3 family protein
[Populus trichocarpa]
Length = 527
Score = 125 bits (315), Expect = 4e-27
Identities = 56/84 (66%), Positives = 69/84 (82%)
Frame = -3
Query: 254 KNQRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNT 75
++ +TKVV+RHLPP +SQ M VE +D F+GRYN ++RPG S HQSYSRAYIDF+
Sbjct: 6 QSDKTKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNSQKHQSYSRAYIDFKRP 65
Query: 74 EDVIEFAEFFDGHVFVNEKGTQFK 3
EDVI+FAEFF+GH+FVNEKGTQFK
Sbjct: 66 EDVIDFAEFFNGHIFVNEKGTQFK 89
>gb|EOY26875.1| Smg-4/UPF3 family protein, putative isoform 6 [Theobroma cacao]
Length = 450
Score = 124 bits (311), Expect = 1e-26
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = -3
Query: 248 QRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTED 69
+RTKVV+RHLPP+++QS L +D RF+ RYN F+FR GK+S HQ YSRAYI+F+ ED
Sbjct: 6 RRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSRAYINFKRPED 65
Query: 68 VIEFAEFFDGHVFVNEKGTQFK 3
V EFAEFFDGHVFVNEKGTQFK
Sbjct: 66 VFEFAEFFDGHVFVNEKGTQFK 87
>gb|EOY26874.1| Smg-4/UPF3 family protein, putative isoform 5 [Theobroma cacao]
Length = 492
Score = 124 bits (311), Expect = 1e-26
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = -3
Query: 248 QRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTED 69
+RTKVV+RHLPP+++QS L +D RF+ RYN F+FR GK+S HQ YSRAYI+F+ ED
Sbjct: 6 RRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSRAYINFKRPED 65
Query: 68 VIEFAEFFDGHVFVNEKGTQFK 3
V EFAEFFDGHVFVNEKGTQFK
Sbjct: 66 VFEFAEFFDGHVFVNEKGTQFK 87
>gb|EOY26871.1| Smg-4/UPF3 family protein, putative isoform 2 [Theobroma cacao]
Length = 487
Score = 124 bits (311), Expect = 1e-26
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = -3
Query: 248 QRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTED 69
+RTKVV+RHLPP+++QS L +D RF+ RYN F+FR GK+S HQ YSRAYI+F+ ED
Sbjct: 6 RRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSRAYINFKRPED 65
Query: 68 VIEFAEFFDGHVFVNEKGTQFK 3
V EFAEFFDGHVFVNEKGTQFK
Sbjct: 66 VFEFAEFFDGHVFVNEKGTQFK 87
>gb|EOY26870.1| Smg-4/UPF3 family protein, putative isoform 1 [Theobroma cacao]
gi|508779616|gb|EOY26872.1| Smg-4/UPF3 family protein,
putative isoform 1 [Theobroma cacao]
gi|508779617|gb|EOY26873.1| Smg-4/UPF3 family protein,
putative isoform 1 [Theobroma cacao]
Length = 523
Score = 124 bits (311), Expect = 1e-26
Identities = 57/82 (69%), Positives = 68/82 (82%)
Frame = -3
Query: 248 QRTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTED 69
+RTKVV+RHLPP+++QS L +D RF+ RYN F+FR GK+S HQ YSRAYI+F+ ED
Sbjct: 6 RRTKVVIRHLPPSVTQSFLFSQIDDRFSDRYNWFSFRLGKSSHKHQRYSRAYINFKRPED 65
Query: 68 VIEFAEFFDGHVFVNEKGTQFK 3
V EFAEFFDGHVFVNEKGTQFK
Sbjct: 66 VFEFAEFFDGHVFVNEKGTQFK 87
>ref|XP_002264276.2| PREDICTED: regulator of nonsense transcripts 3B-like [Vitis
vinifera]
Length = 256
Score = 124 bits (311), Expect = 1e-26
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
RTKVV+RHLPPT+S++ +E +D+ F GRY FRPGK S QSYSRAY+DF+ EDV
Sbjct: 7 RTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDFKRPEDV 66
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
IEFAEFFDGHVFVNEKGTQFK
Sbjct: 67 IEFAEFFDGHVFVNEKGTQFK 87
>emb|CBI29694.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 124 bits (311), Expect = 1e-26
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
RTKVV+RHLPPT+S++ +E +D+ F GRY FRPGK S QSYSRAY+DF+ EDV
Sbjct: 7 RTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDFKRPEDV 66
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
IEFAEFFDGHVFVNEKGTQFK
Sbjct: 67 IEFAEFFDGHVFVNEKGTQFK 87
>gb|EXB88206.1| hypothetical protein L484_011635 [Morus notabilis]
Length = 533
Score = 124 bits (310), Expect = 2e-26
Identities = 57/81 (70%), Positives = 65/81 (80%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
RTK V+R LPP+LSQS L + +D RF+GRY+ F FRPGK S HQ YSRAYIDF EDV
Sbjct: 7 RTKAVVRRLPPSLSQSDLFQQIDDRFSGRYHWFCFRPGKNSQKHQRYSRAYIDFNRAEDV 66
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
+EFAEFFDGHVFVNEKG Q+K
Sbjct: 67 LEFAEFFDGHVFVNEKGVQYK 87
>gb|EMJ23015.1| hypothetical protein PRUPE_ppa004923mg [Prunus persica]
Length = 485
Score = 123 bits (308), Expect = 3e-26
Identities = 58/81 (71%), Positives = 67/81 (82%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
RTKVVLRHLPP++SQ+ LVE +D F+GRYN FRPGK S + SYSRAYID + EDV
Sbjct: 8 RTKVVLRHLPPSISQTSLVEQIDVFFSGRYNWVAFRPGKRSQKNPSYSRAYIDLKRPEDV 67
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
IEFAEFFDGH+FVNEKG+QFK
Sbjct: 68 IEFAEFFDGHLFVNEKGSQFK 88
>gb|EMJ23014.1| hypothetical protein PRUPE_ppa004923mg [Prunus persica]
Length = 482
Score = 123 bits (308), Expect = 3e-26
Identities = 58/81 (71%), Positives = 67/81 (82%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
RTKVVLRHLPP++SQ+ LVE +D F+GRYN FRPGK S + SYSRAYID + EDV
Sbjct: 8 RTKVVLRHLPPSISQTSLVEQIDVFFSGRYNWVAFRPGKRSQKNPSYSRAYIDLKRPEDV 67
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
IEFAEFFDGH+FVNEKG+QFK
Sbjct: 68 IEFAEFFDGHLFVNEKGSQFK 88
>ref|XP_006598794.1| PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1
[Glycine max] gi|571524272|ref|XP_006598795.1|
PREDICTED: regulator of nonsense transcripts UPF3-like
isoform X2 [Glycine max]
Length = 512
Score = 122 bits (307), Expect = 4e-26
Identities = 57/81 (70%), Positives = 68/81 (83%)
Frame = -3
Query: 245 RTKVVLRHLPPTLSQSMLVEHVDSRFAGRYNCFTFRPGKTSLNHQSYSRAYIDFRNTEDV 66
RTKVVLRHLPP++S++ L+ +D+ FAGRYN +FRPGK S H SYSRAYIDF+ EDV
Sbjct: 7 RTKVVLRHLPPSISEAALLAQIDAAFAGRYNWLSFRPGKISQKHISYSRAYIDFKRPEDV 66
Query: 65 IEFAEFFDGHVFVNEKGTQFK 3
I FAEFF+GHVFVNEKG+QFK
Sbjct: 67 ILFAEFFNGHVFVNEKGSQFK 87