BLASTX nr result
ID: Atropa21_contig00024718
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00024718
(768 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006354580.1| PREDICTED: DNA-directed RNA polymerases II, ... 84 1e-28
ref|XP_004229520.1| PREDICTED: probable DNA-directed RNA polymer... 84 1e-28
ref|XP_002274208.1| PREDICTED: DNA-directed RNA polymerases I, I... 75 3e-11
gb|EXB80870.1| DNA-directed RNA polymerases I, II, and III subun... 74 4e-11
gb|ESW06593.1| hypothetical protein PHAVU_010G060300g [Phaseolus... 51 2e-10
ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymer... 69 2e-09
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I... 68 3e-09
emb|CAN73856.1| hypothetical protein VITISV_036454 [Vitis vinifera] 68 3e-09
gb|EMJ09140.1| hypothetical protein PRUPE_ppa017455mg, partial [... 65 3e-08
gb|AAK12101.1|AF323605_1 RNA polymerase I, II and III subunit RP... 64 4e-08
gb|AAK55847.1|AF266463_1 RNA polymerase subunit [Manihot esculenta] 64 4e-08
ref|XP_002319223.1| hypothetical protein POPTR_0013s06920g [Popu... 63 1e-07
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ... 62 2e-07
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ... 62 2e-07
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I... 62 2e-07
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S... 62 3e-07
ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citr... 61 5e-07
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s... 61 5e-07
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi... 61 5e-07
gb|EOY04748.1| RNA polymerase Rpb8, putative isoform 1 [Theobrom... 53 6e-07
>ref|XP_006354580.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like isoform X1 [Solanum tuberosum]
gi|565376162|ref|XP_006354581.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like isoform X2
[Solanum tuberosum]
Length = 144
Score = 84.0 bits (206), Expect(2) = 1e-28
Identities = 42/47 (89%), Positives = 43/47 (91%)
Frame = +2
Query: 224 EQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSD 364
E KSL DKFEYIVHGLVYKVSM+ SG DKKVVVYVSFGGLQLMLKSD
Sbjct: 76 EGKSLLDKFEYIVHGLVYKVSMEGSGADKKVVVYVSFGGLQLMLKSD 122
Score = 69.7 bits (169), Expect(2) = 1e-28
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 60 MDGFHFDEIIRVRKVDADGKKYDKVSRIEAESNDGATS 173
MD FHFDEII+V KVDADGKKYDKVSRIEAES+DGA+S
Sbjct: 1 MDAFHFDEIIKVVKVDADGKKYDKVSRIEAESSDGASS 38
>ref|XP_004229520.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3-like [Solanum lycopersicum]
Length = 144
Score = 84.0 bits (206), Expect(2) = 1e-28
Identities = 42/47 (89%), Positives = 43/47 (91%)
Frame = +2
Query: 224 EQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSD 364
E KSL DKFEYIVHGLVYKVSM+ SG DKKVVVYVSFGGLQLMLKSD
Sbjct: 76 EGKSLLDKFEYIVHGLVYKVSMEGSGADKKVVVYVSFGGLQLMLKSD 122
Score = 69.7 bits (169), Expect(2) = 1e-28
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 60 MDGFHFDEIIRVRKVDADGKKYDKVSRIEAESNDGATS 173
MD FHFDEII+V KVDADGKKY+KVSRIEAES+DGATS
Sbjct: 1 MDAFHFDEIIKVVKVDADGKKYEKVSRIEAESSDGATS 38
>ref|XP_002274208.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Vitis vinifera] gi|296084254|emb|CBI24642.3|
unnamed protein product [Vitis vinifera]
Length = 145
Score = 74.7 bits (182), Expect = 3e-11
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +2
Query: 218 EGEQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+GEQKSLADKF+Y+++G++YKVS + SGPD K V+Y SFGGL ++LK DP
Sbjct: 77 QGEQKSLADKFDYVMYGIIYKVSNEGSGPDVKGVIYASFGGLLMILKGDP 126
>gb|EXB80870.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3 [Morus
notabilis]
Length = 152
Score = 74.3 bits (181), Expect = 4e-11
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +2
Query: 218 EGEQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+ EQKSLADKFEYI+HGL+YK++ + SG D KV +YVSFGGLQ+ML DP
Sbjct: 77 QAEQKSLADKFEYIMHGLLYKLTEEGSGSDFKVGIYVSFGGLQMMLNGDP 126
>gb|ESW06593.1| hypothetical protein PHAVU_010G060300g [Phaseolus vulgaris]
Length = 140
Score = 51.2 bits (121), Expect(2) = 2e-10
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +2
Query: 227 QKSLADKFEYIVHGLVYKVSMD-TSGPDKKVVVYVSFGGLQLMLK 358
Q S+ DKFEYI+HG +Y ++ + S P +V VY SFGGLQLML+
Sbjct: 72 QVSIQDKFEYIMHGRLYNITNEGCSKPQHEVEVYASFGGLQLMLR 116
Score = 40.8 bits (94), Expect(2) = 2e-10
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +3
Query: 75 FDEIIRVRKVDADGKKYDKVSRIEAES 155
FD+I +V +D DGKKYDKVSRI A+S
Sbjct: 6 FDDIFKVDDIDPDGKKYDKVSRIVAQS 32
>ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3-like [Cucumis sativus]
gi|449509097|ref|XP_004163492.1| PREDICTED: probable
DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Cucumis sativus]
Length = 146
Score = 68.6 bits (166), Expect = 2e-09
Identities = 32/47 (68%), Positives = 38/47 (80%)
Frame = +2
Query: 227 QKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+KSLADKFEYI+HG YK+S + SG D KV VY SFGGLQ++LK DP
Sbjct: 80 KKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQMLLKGDP 126
>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3 isoform 1 [Vitis vinifera]
gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3 isoform 2
[Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
protein product [Vitis vinifera]
Length = 145
Score = 68.2 bits (165), Expect = 3e-09
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 227 QKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+KSLADKFEY++HG +YK+S + SGP+ K V+YVSFGGL +ML DP
Sbjct: 80 RKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLMMLSGDP 126
>emb|CAN73856.1| hypothetical protein VITISV_036454 [Vitis vinifera]
Length = 305
Score = 68.2 bits (165), Expect = 3e-09
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 227 QKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+KSLADKFEY++HG +YK+S + SGP+ K V+YVSFGGL +ML DP
Sbjct: 102 RKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLMMLSGDP 148
>gb|EMJ09140.1| hypothetical protein PRUPE_ppa017455mg, partial [Prunus persica]
Length = 170
Score = 64.7 bits (156), Expect = 3e-08
Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 5/55 (9%)
Frame = +2
Query: 218 EGEQKSLADKFEYIVHGLVYKVSMDT-----SGPDKKVVVYVSFGGLQLMLKSDP 367
E EQKSLADKF+YI+HGL+YK+S + S KV VY SFGGLQ+MLK DP
Sbjct: 96 EVEQKSLADKFDYIMHGLLYKMSTEKGKSEYSKEGVKVEVYASFGGLQMMLKGDP 150
>gb|AAK12101.1|AF323605_1 RNA polymerase I, II and III subunit RPB8, partial [Manihot
esculenta]
Length = 110
Score = 64.3 bits (155), Expect = 4e-08
Identities = 28/50 (56%), Positives = 39/50 (78%)
Frame = +2
Query: 218 EGEQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+G +K+LADK+EYI+HG +YK+S + SG K +YVS+GGL +MLK DP
Sbjct: 42 QGARKTLADKYEYIMHGKLYKISEEGSGKAVKAEIYVSYGGLLMMLKGDP 91
>gb|AAK55847.1|AF266463_1 RNA polymerase subunit [Manihot esculenta]
Length = 96
Score = 64.3 bits (155), Expect = 4e-08
Identities = 28/50 (56%), Positives = 39/50 (78%)
Frame = +2
Query: 218 EGEQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+G +K+LADK+EYI+HG +YK+S + SG K +YVS+GGL +MLK DP
Sbjct: 28 QGARKTLADKYEYIMHGKLYKISEEGSGKAVKAEIYVSYGGLLMMLKGDP 77
>ref|XP_002319223.1| hypothetical protein POPTR_0013s06920g [Populus trichocarpa]
gi|118487468|gb|ABK95561.1| unknown [Populus
trichocarpa] gi|222857599|gb|EEE95146.1| hypothetical
protein POPTR_0013s06920g [Populus trichocarpa]
Length = 143
Score = 63.2 bits (152), Expect = 1e-07
Identities = 26/50 (52%), Positives = 37/50 (74%)
Frame = +2
Query: 218 EGEQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+G+Q S DKFEY+ HG +YK+ + SG D K+ +Y+SFGGLQL+L+ P
Sbjct: 75 QGKQPSKEDKFEYVTHGKLYKIDKEGSGADFKLEIYISFGGLQLLLRGSP 124
>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Oryza brachyantha]
Length = 147
Score = 62.4 bits (150), Expect = 2e-07
Identities = 29/49 (59%), Positives = 39/49 (79%), Gaps = 2/49 (4%)
Frame = +2
Query: 227 QKSLADKFEYIVHGLVYKVSMD--TSGPDKKVVVYVSFGGLQLMLKSDP 367
+K+LADK+EY++HG +YK+S D TSG + KV +Y SFGGL +MLK DP
Sbjct: 80 RKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGLLMMLKGDP 128
>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
8B-like [Solanum tuberosum]
Length = 145
Score = 62.0 bits (149), Expect = 2e-07
Identities = 26/50 (52%), Positives = 38/50 (76%)
Frame = +2
Query: 218 EGEQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+G +KSLADKFEY++HG +Y++S + SG K ++VSFGGL + L+ DP
Sbjct: 77 QGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRGDP 126
>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like isoform 1 [Solanum lycopersicum]
gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit rpabc3-like
isoform 2 [Solanum lycopersicum]
Length = 145
Score = 62.0 bits (149), Expect = 2e-07
Identities = 26/50 (52%), Positives = 38/50 (76%)
Frame = +2
Query: 218 EGEQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+G +KSLADKFEY++HG +Y++S + SG K ++VSFGGL + L+ DP
Sbjct: 77 QGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLMQLRGDP 126
>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
gi|241917379|gb|EER90523.1| hypothetical protein
SORBIDRAFT_01g001420 [Sorghum bicolor]
Length = 145
Score = 61.6 bits (148), Expect = 3e-07
Identities = 25/47 (53%), Positives = 37/47 (78%)
Frame = +2
Query: 227 QKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
+K+LAD +EY++HG +YK+S DTS + KV +Y SFGGL ++L+ DP
Sbjct: 80 RKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLMLLRGDP 126
>ref|XP_006442881.1| hypothetical protein CICLE_v10022723mg [Citrus clementina]
gi|568850174|ref|XP_006478800.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 8B-like [Citrus
sinensis] gi|557545143|gb|ESR56121.1| hypothetical
protein CICLE_v10022723mg [Citrus clementina]
Length = 146
Score = 60.8 bits (146), Expect = 5e-07
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2
Query: 221 GEQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSDP 367
G +K+LADK+EYI+HG ++K+ + SG K +YVS+GGL +MLK DP
Sbjct: 79 GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAEIYVSYGGLLMMLKGDP 127
>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
sativa Japonica Group]
Length = 396
Score = 60.8 bits (146), Expect = 5e-07
Identities = 28/48 (58%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Frame = +2
Query: 227 QKSLADKFEYIVHGLVYKVSMD-TSGPDKKVVVYVSFGGLQLMLKSDP 367
+K+LADKF+Y++HG +YK+S D +SG KV +Y SFGGL +MLK DP
Sbjct: 330 RKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLKGDP 377
>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
gi|125598367|gb|EAZ38147.1| hypothetical protein
OsJ_22498 [Oryza sativa Japonica Group]
Length = 191
Score = 60.8 bits (146), Expect = 5e-07
Identities = 28/48 (58%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Frame = +2
Query: 227 QKSLADKFEYIVHGLVYKVSMD-TSGPDKKVVVYVSFGGLQLMLKSDP 367
+K+LADKF+Y++HG +YK+S D +SG KV +Y SFGGL +MLK DP
Sbjct: 125 RKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLKGDP 172
>gb|EOY04748.1| RNA polymerase Rpb8, putative isoform 1 [Theobroma cacao]
Length = 188
Score = 52.8 bits (125), Expect(2) = 6e-07
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +2
Query: 221 GEQKSLADKFEYIVHGLVYKVSMDTSGPDKKVVVYVSFGGLQLMLKSD 364
G +KSLADK+EYI+ G +YK+S D SG K + VS GGL +ML+ +
Sbjct: 121 GGRKSLADKYEYIMRGKLYKISADGSGKSLKAEMIVSSGGLLMMLRGE 168
Score = 27.7 bits (60), Expect(2) = 6e-07
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 75 FDEIIRVRKVDADGKKYDK 131
F++I V K+D DGKK+DK
Sbjct: 79 FEDIFVVDKLDPDGKKFDK 97