BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00024605
         (1546 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   327   e-103
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   305   1e-94
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   264   9e-75
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   219   2e-74
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268...   271   4e-70
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   254   2e-69
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   262   3e-67
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       258   4e-66
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   258   5e-66
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           258   5e-66
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   258   5e-66
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                257   8e-66
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   256   2e-65
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               254   7e-65
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...   245   3e-62
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   245   3e-62
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               245   3e-62
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   245   3e-62
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   245   4e-62
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   243   2e-61

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  327 bits (837), Expect(2) = e-103
 Identities = 182/413 (44%), Positives = 258/413 (62%), Gaps = 17/413 (4%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            KAP  DGFNS FFKK+W +I  ++   +L FF+   + K INC  +TL+ K+       +
Sbjct: 457  KAPGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKD 516

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPIAC ++LYK+ISKI+TKRLQ ++  ++   QT F+  R I DNI+L  EL++GY R+
Sbjct: 517  YRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRR 576

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNLQ 896
             +SPRC++KVD++KAYDSVE  FLE +L  L FP  FI  IMACVKTV+YSI+LN     
Sbjct: 577  HVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSI 636

Query: 897  P----KGLRQGDPLSPYLFVIIMEYLSRLLKPWYYVP---------R*KLS----SSDLL 1025
            P    KGLRQGDPLSP+LF + MEYLSR +      P         R KL+    + DLL
Sbjct: 637  PFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLL 696

Query: 1026 MTYYYSQGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGEL 1205
            M         S +       SK S  L  ++ KSC+YFGGV  +   Q+  ++    G L
Sbjct: 697  MFARADASSISKIMAAFNSFSKASG-LQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSL 755

Query: 1206 TFKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQ 1385
             F+YLGV L++K+L+  + +PL+DK+  +   W A LLSYAGR+ L+K++L S + +W Q
Sbjct: 756  PFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQ 815

Query: 1386 IFILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNFTDIM 1544
            IF LPKK+++ + +  + ++ TG+ D   K  V W+ L +PK+  GLN T+++
Sbjct: 816  IFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMV 868



 Score = 76.3 bits (186), Expect(2) = e-103
 Identities = 42/124 (33%), Positives = 67/124 (54%)
 Frame = +1

Query: 1   KWRLVEEIIFK*KSRVHWLKEGDFNSKYFFASMXXXXXXXXXXXLVDAQGHVIDTRDGVA 180
           KW  ++E I K KSR+ WL  GD NSK+FF ++           L + +G  +     + 
Sbjct: 338 KWSTIDESILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQ 397

Query: 181 AEI*NFYQGFLGTAATWLPAMDPRVMKEGPVLTKSQQFSLIDPISSDQVLIDLKGIDDSK 360
            EI NFY+  LGT+++ L A+D  V++ G  L+ +    L+ PI+  ++   L  IDD+K
Sbjct: 398 NEICNFYRRLLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTK 457

Query: 361 HLGV 372
             G+
Sbjct: 458 APGL 461


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  305 bits (782), Expect(2) = 1e-94
 Identities = 165/408 (40%), Positives = 261/408 (63%), Gaps = 17/408 (4%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            KAP  DGFN+ FFKK+W  I  ++ A + +FF+   + + INC  +TL+ KV++ + V E
Sbjct: 454  KAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKE 513

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            +RPIAC T +YK+ISK++T R++G++  +++  Q+ F+  R I+DNI+L  EL++GY RK
Sbjct: 514  FRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRK 573

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNLQ 896
             +SPRC+MKVD++KAYDSVE  FLE +L    FP +F+  IM CV TV+YS+++N    Q
Sbjct: 574  HMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQ 633

Query: 897  P----KGLRQGDPLSPYLFVIIMEYLSRLLK------PWYYVPR*K-------LSSSDLL 1025
            P    KGLRQGDP+SP+LF + MEYLSR L+       + + P+ +       + + DLL
Sbjct: 634  PFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLL 693

Query: 1026 MTYYYSQGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGEL 1205
            M     +    ++ V     S ++  L  +  KS +YF GV  +   ++   +    GEL
Sbjct: 694  MFCRADKSSLDHMNVAFQKFS-HASGLAASHEKSNIYFCGVDDETARELADYVHMQLGEL 752

Query: 1206 TFKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQ 1385
             F+YLGV L++K+L+  + +PL++ + ++  +W A+LLSYAGR+ LIKS+L+S + +W+ 
Sbjct: 753  PFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAH 812

Query: 1386 IFILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLN 1529
            IF L KKV++ +  + + ++ TG T++ KK  V W  + +PK+  G N
Sbjct: 813  IFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWN 860



 Score = 70.5 bits (171), Expect(2) = 1e-94
 Identities = 42/123 (34%), Positives = 63/123 (51%)
 Frame = +1

Query: 4   WRLVEEIIFK*KSRVHWLKEGDFNSKYFFASMXXXXXXXXXXXLVDAQGHVIDTRDGVAA 183
           W  +E+ I + KSR+ WL++GD NSK FF ++           L    G VI   D V  
Sbjct: 336 WSHIEDSILQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQE 395

Query: 184 EI*NFYQGFLGTAATWLPAMDPRVMKEGPVLTKSQQFSLIDPISSDQVLIDLKGIDDSKH 363
           EI  FY+  LGT A+ L  +D   ++ G  L+   + SLI  ++S ++   L GI + K 
Sbjct: 396 EILEFYKKLLGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKA 455

Query: 364 LGV 372
            G+
Sbjct: 456 PGL 458


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  264 bits (674), Expect(2) = 9e-75
 Identities = 149/406 (36%), Positives = 235/406 (57%), Gaps = 16/406 (3%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            KA   DGF+  FF   WPIIG +VT  + +FF +  + K  N   + L+ K+ N SS+++
Sbjct: 360  KASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSD 419

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            +RPI+C  ++YK+ISK++T RL+  +   I  +Q+AF+  R+  +N++L  ELV GY +K
Sbjct: 420  FRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKK 479

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNL- 893
             I+P  M+KVD++KA+DSV   F+   L +L  P KF C I+ C+ T ++S++LN  +  
Sbjct: 480  NIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAG 539

Query: 894  ---QPKGLRQGDPLSPYLFVIIMEYLSRLLKPWY------YVPR*K------LSSSDLLM 1028
                 KGLRQGDP+SPYLFV+ ME  S LL+  Y      Y P+        L  +D +M
Sbjct: 540  HFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVM 599

Query: 1029 TYYYSQGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELT 1208
             ++  +  + +  V+ +        L +N NK+ LY  G+    ++  +A  GF  G L 
Sbjct: 600  IFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQS-ESDSMASYGFKLGSLP 658

Query: 1209 FKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQI 1388
             +YLG+ L +++L+I ++ PL++K+  +  SW  RLLS+AGRV L+ SV++    FW   
Sbjct: 659  VRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISS 718

Query: 1389 FILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGL 1526
            FILP   ++ I S+   ++ +   DK     V W  +C PKA  G+
Sbjct: 719  FILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGI 764



 Score = 45.4 bits (106), Expect(2) = 9e-75
 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
 Frame = +1

Query: 1   KWRLVEEI---IFK*KSRVHWLKEGDFNSKYFFASMXXXXXXXXXXXLVDAQGHVIDTRD 171
           KWR++ E     F  +SRV+WL+EGD NS YF               L D  G  I+ + 
Sbjct: 237 KWRILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQ 296

Query: 172 GVAAEI*NFYQGFLGTAATWLPAMDPRVMKE--GPVLTKSQQFSLIDPISSDQV 327
            +      ++Q  LG +   LP  +   +        + +QQ SL  P SS+Q+
Sbjct: 297 NLENHCVEYFQSNLG-SEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQI 349


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  219 bits (557), Expect(3) = 2e-74
 Identities = 110/207 (53%), Positives = 147/207 (71%), Gaps = 4/207 (1%)
 Frame = +3

Query: 357 KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
           KAP  DG+N  FFK +W IIG  V   +L FF T  + K INC  +TL+ K  N +SV  
Sbjct: 137 KAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKN 196

Query: 537 YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
           +RPIAC + +YK+ISKI+T R+QG+++ ++  NQ+AFV  R+I DNIIL HELVK Y RK
Sbjct: 197 FRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRK 256

Query: 717 GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNLQ 896
           GISPRCM+K+D+QKAY+SVE PF++ ++  L F  KF+  +M C+ T +Y+  +N    +
Sbjct: 257 GISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTR 316

Query: 897 P----KGLRQGDPLSPYLFVIIMEYLS 965
           P    KGLRQGDP+SPYLFVI MEYL+
Sbjct: 317 PFAAKKGLRQGDPISPYLFVICMEYLN 343



 Score = 71.2 bits (173), Expect(3) = 2e-74
 Identities = 41/124 (33%), Positives = 64/124 (51%)
 Frame = +1

Query: 1   KWRLVEEIIFK*KSRVHWLKEGDFNSKYFFASMXXXXXXXXXXXLVDAQGHVIDTRDGVA 180
           KW  +EE I+  KSR +W++ GD N+K+F A             L+   G  ID  + + 
Sbjct: 18  KWSTIEEKIWMQKSRANWIQLGDSNTKFFHAYAKERRCQNNIKFLITEDGTRIDKHNLIK 77

Query: 181 AEI*NFYQGFLGTAATWLPAMDPRVMKEGPVLTKSQQFSLIDPISSDQVLIDLKGIDDSK 360
            EI  FY   +G++   LP +D  V+K GP+L++ QQ  L    ++ +V   L  +D SK
Sbjct: 78  EEIRGFYLKLMGSSVDSLPMVDKNVVKRGPMLSQHQQDLLCSKFTAVEVKNVLFSMDSSK 137

Query: 361 HLGV 372
             G+
Sbjct: 138 APGI 141



 Score = 39.3 bits (90), Expect(3) = 2e-74
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +2

Query: 989  CTKMKIVQFGFADDLLLFSRGDLISLGAVHDCFKKFSNA 1105
            C ++ ++   F DDLLLFSRGD+ S+  + + F  FS A
Sbjct: 361  CKRLNLIHVCFVDDLLLFSRGDVDSVSQLFEAFSLFSAA 399


>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
            lycopersicum]
          Length = 717

 Score =  271 bits (694), Expect = 4e-70
 Identities = 148/326 (45%), Positives = 210/326 (64%), Gaps = 19/326 (5%)
 Frame = +3

Query: 621  LIHRNQTAFVSVRMISDNIILRHELVKGYERKGISPRCMMKVDMQKAYDSVE*PFLEQVL 800
            +I  +Q  F+  R I DNIIL HELVK Y RK +SPRCM+K+D+ KAYDSVE PFLEQV+
Sbjct: 350  IISDSQAGFIPGRKIGDNIILAHELVKAYTRKNVSPRCMLKIDLHKAYDSVEWPFLEQVM 409

Query: 801  NSLYFPVKFIC*IMACVKTVTYSIMLNDTNLQ----PKGLRQGDPLSPYLFVIIMEYLSR 968
              L FP  F   +M CVKTV Y+I++N  N Q     KGLRQGDP+SP+LF I MEYLSR
Sbjct: 410  EGLGFPDLFTKWVMKCVKTVNYTIVVNGQNTQRFDAAKGLRQGDPMSPFLFAIAMEYLSR 469

Query: 969  LLKPW-------YYVPR*KLS------SSDLLMTYYYSQGVTSYLWV--QCMIASKNSQM 1103
            LLK         Y+    KL       + DLL+   +S+G  + +    +C      +  
Sbjct: 470  LLKGLKEDKSFKYHPKYAKLDVTHLCFADDLLL---FSRGDLNSIKALQKCFTEFSQASG 526

Query: 1104 LNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELTFKYLGVTLSTKRLSILKFQPLMDKM 1283
            L  NLNKS +Y GGV+ +V+ QI+ +LG+T  EL FKYLGV LS+K+L+ +++ PL++K+
Sbjct: 527  LQANLNKSSIYCGGVQMEVRQQIIQQLGYTIEELPFKYLGVPLSSKKLNTIQWYPLIEKV 586

Query: 1284 LHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQIFILPKKVLEMINSIRKGYI*TGSTD 1463
            + +I SW+A+ LSYAGR  L+K+VL   +A W+Q+FI+P K++++I  + + Y+ +G   
Sbjct: 587  MARINSWTAKKLSYAGRAQLVKTVLFGVQALWAQLFIIPAKIIKLIEGLCRSYLWSGVGY 646

Query: 1464 KIKKTLVFWEHLCKPKAARGLNFTDI 1541
              KK L+ W+ +C PK   GL   ++
Sbjct: 647  VTKKALIAWDKVCSPKYEGGLGLINL 672


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  254 bits (649), Expect(2) = 2e-69
 Identities = 152/411 (36%), Positives = 226/411 (54%), Gaps = 16/411 (3%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            K+P  DG+ S FFK  W IIG + T  V  FF    + K IN   + L+ K      + +
Sbjct: 469  KSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKD 528

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPI+C   LYK+ISKII  RL+ ++   I  NQ+AFV  R++ +N++L  ELVK Y + 
Sbjct: 529  YRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKD 588

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNL- 893
             IS RC +K+D+ KA+DSV+ PFL  V   L FP +FI  I  C+ T ++S+ +N     
Sbjct: 589  TISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAG 648

Query: 894  ---QPKGLRQGDPLSPYLFVIIMEYLSRLL------KPWYYVPR*K------LSSSDLLM 1028
                 +GLRQG  LSPYLFVI M+ LS++L      + + Y P+ K      LS +D LM
Sbjct: 649  YFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLM 708

Query: 1029 TYYYSQGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELT 1208
                 +  +    ++          L ++L KS +Y  G+    +N++  +  F+ G+L 
Sbjct: 709  VLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLP 768

Query: 1209 FKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQI 1388
             +YLG+ L TKRLS     PL++++  +I SW++R LSYAGR+ LI SVL S   FW   
Sbjct: 769  VRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAA 828

Query: 1389 FILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNFTDI 1541
            F LP+K +  +  +   ++ +G+     K  + W  +CKPK   GL    +
Sbjct: 829  FRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSL 879



 Score = 37.4 bits (85), Expect(2) = 2e-69
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
 Frame = +1

Query: 10  LVEEIIFK*KSRVHWLKEGDFNSKYFFASMXXXXXXXXXXXLVDAQGHVIDTRDGVAAEI 189
           ++EE   K KS++HW + GD N+K F  +            ++   G V    D + AE 
Sbjct: 351 ILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEA 410

Query: 190 *NFYQGFL--------GTAATWLPAMDPRVMKEGPVLTKSQQFSLIDPISSDQV 327
             F++ FL        G   T L  + P    +      + Q SLI P++++++
Sbjct: 411 ERFFREFLQLIPNDFEGVTITELQQLLPVRCSD------ADQQSLIRPVTAEEI 458


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  262 bits (669), Expect = 3e-67
 Identities = 153/410 (37%), Positives = 227/410 (55%), Gaps = 14/410 (3%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            K+P  DG+   FF++ W +IG +VT  +  FF    + K +N   + L+ K      + +
Sbjct: 735  KSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKD 794

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPI+C   LYK ISK++  RL+ L+   I  NQ+AF+S R++ +N++L  ELVK Y + 
Sbjct: 795  YRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKD 854

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNLQ 896
            G+SPRC MK+D+ KA+DSV+ PFL   L +L  P KFI  I  C+ T ++S+ +N     
Sbjct: 855  GLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVN----- 909

Query: 897  PKGLRQGDPLSPYLFVIIMEYLSRLL------KPWYYVPR*K------LSSSDLLMTYYY 1040
              GLRQG  LSPYLFVI M  LS +L      K + Y PR +      L  +D +M   +
Sbjct: 910  --GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMV--F 965

Query: 1041 SQGVTSYLWVQCMIASKNSQM--LNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELTFK 1214
            S G    L     I    +    LN++L KS L+   +  +    ILA+  F  G L  +
Sbjct: 966  SAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVR 1025

Query: 1215 YLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQIFI 1394
            YLG+ L TKR+++    PL++K+  +I+SW  R LSYAGR+ L+ SV++S   FW   F 
Sbjct: 1026 YLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFR 1085

Query: 1395 LPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNFTDIM 1544
            LP+  +  I  I   ++ +G+     K  V W  +CKPK+  GL    ++
Sbjct: 1086 LPRACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLV 1135


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  258 bits (660), Expect = 4e-66
 Identities = 147/407 (36%), Positives = 234/407 (57%), Gaps = 16/407 (3%)
 Frame = +3

Query: 372  DGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTEYRPIA 551
            DGF + FF  +W I+G +VT  + +FF +  + K  N  TI L+ K+ NP+  +++RPI+
Sbjct: 468  DGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPIS 527

Query: 552  CYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERKGISPR 731
            C  +LYK+I++++T RLQ L+  +I   Q+AF+  R +++N++L  +LV GY    ISPR
Sbjct: 528  CLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPR 587

Query: 732  CMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTN----LQP 899
             M+KVD++KA+DSV   F+   L +L  P KFI  I  C+ T T+++ +N  N       
Sbjct: 588  GMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKST 647

Query: 900  KGLRQGDPLSPYLFVIIMEYLSRLLKPWY------YVPR*K------LSSSDLLMTYYYS 1043
            KGLRQGDPLSPYLFV+ ME  S LL   Y      Y P+        L  +D +M ++  
Sbjct: 648  KGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDG 707

Query: 1044 QGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELTFKYLG 1223
               + +   + +    +   L VN +KS LY  G+   +++   A  GF  G L  +YLG
Sbjct: 708  GSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLN-QLESNANAAYGFPIGTLPIRYLG 766

Query: 1224 VTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQIFILPK 1403
            + L  ++L I +++PL++K+  +  SW  + LS+AGR+ LI SV+  +  FW   F+LPK
Sbjct: 767  LPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPK 826

Query: 1404 KVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNFTDIM 1544
              ++ I S+   ++ +G+ ++ K   V W  LC PK+  GL    ++
Sbjct: 827  GCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLL 873


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  258 bits (659), Expect = 5e-66
 Identities = 154/404 (38%), Positives = 233/404 (57%), Gaps = 17/404 (4%)
 Frame = +3

Query: 372  DGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTEYRPIA 551
            DG++  FF+  W IIG +V A + +FFD+  + K  N  T+ L+ K  N  +++E+RPI+
Sbjct: 328  DGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPIS 387

Query: 552  CYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERKGISPR 731
            C  +LYK+ISK++T RLQGL+  +I  +Q+AF+  R +++N++L  E+V GY R  ISPR
Sbjct: 388  CLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPR 447

Query: 732  CMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTN----LQP 899
             M+KVD++KA+DSV+  F+   L +L  P ++I  I  C+ T +++I +N          
Sbjct: 448  GMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRST 507

Query: 900  KGLRQGDPLSPYLFVIIMEYLSRLLKPWY------YVPR-*KLSSSDLLM---TYYYSQG 1049
            KGLRQGDPLSPYLFV+ ME  S+LL   Y      Y P+   LS S L+       +  G
Sbjct: 508  KGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDG 567

Query: 1050 VTSYLWVQCMIASKNSQM--LNVNLNKSCLYFGGVKPDVQNQIL-AKLGFTKGELTFKYL 1220
             +S +   C      +    L VN +KS L+  G+  D+  +I  A  GF  G    +YL
Sbjct: 568  GSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL--DLSERITSAAYGFPAGTFPIRYL 625

Query: 1221 GVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQIFILP 1400
            G+ L  ++L I  + PL++K+  ++ SW ++ LS+AGR  LI SV+     FW   F+LP
Sbjct: 626  GLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLP 685

Query: 1401 KKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNF 1532
            K  ++ I S+   ++  GS D  K + V W   C PK+  GL F
Sbjct: 686  KGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGF 729


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  258 bits (659), Expect = 5e-66
 Identities = 154/404 (38%), Positives = 233/404 (57%), Gaps = 17/404 (4%)
 Frame = +3

Query: 372  DGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTEYRPIA 551
            DG++  FF+  W IIG +V A + +FFD+  + K  N  T+ L+ K  N  +++E+RPI+
Sbjct: 328  DGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPIS 387

Query: 552  CYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERKGISPR 731
            C  +LYK+ISK++T RLQGL+  +I  +Q+AF+  R +++N++L  E+V GY R  ISPR
Sbjct: 388  CLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPR 447

Query: 732  CMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTN----LQP 899
             M+KVD++KA+DSV+  F+   L +L  P ++I  I  C+ T +++I +N          
Sbjct: 448  GMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRST 507

Query: 900  KGLRQGDPLSPYLFVIIMEYLSRLLKPWY------YVPR-*KLSSSDLLM---TYYYSQG 1049
            KGLRQGDPLSPYLFV+ ME  S+LL   Y      Y P+   LS S L+       +  G
Sbjct: 508  KGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDG 567

Query: 1050 VTSYLWVQCMIASKNSQM--LNVNLNKSCLYFGGVKPDVQNQIL-AKLGFTKGELTFKYL 1220
             +S +   C      +    L VN +KS L+  G+  D+  +I  A  GF  G    +YL
Sbjct: 568  GSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL--DLSERITSAAYGFPAGTFPIRYL 625

Query: 1221 GVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQIFILP 1400
            G+ L  ++L I  + PL++K+  ++ SW ++ LS+AGR  LI SV+     FW   F+LP
Sbjct: 626  GLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLP 685

Query: 1401 KKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNF 1532
            K  ++ I S+   ++  GS D  K + V W   C PK+  GL F
Sbjct: 686  KGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGF 729


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  258 bits (659), Expect = 5e-66
 Identities = 151/408 (37%), Positives = 230/408 (56%), Gaps = 18/408 (4%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            K+P  DG+   FFK AWP++G  +   +  FF    + K IN   + L+SK    S + +
Sbjct: 616  KSPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKD 675

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPI+C   LYK++SK++  RL+ ++   I  NQ+AF+  R++ +N++L  ELVK Y ++
Sbjct: 676  YRPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKE 735

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDT--- 887
             IS R  +K+D+ KA+D V+ PFL  VL +++ P  FI  I  C+ T ++S+ +N     
Sbjct: 736  SISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSG 795

Query: 888  -NLQPKGLRQGDPLSPYLFVIIMEYLSRLL------KPWYYVPR*K------LSSSDLLM 1028
                 +GLRQG  LSPYL+VI M  LS +L      K   Y PR +      L  +D +M
Sbjct: 796  FFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIM 855

Query: 1029 TYYYSQGVTSYLWVQCMIASKNSQM--LNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGE 1202
               +S G +  +     I  K + M  L ++L KS ++  G+ P+ +  IL +  F  G 
Sbjct: 856  V--FSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGT 913

Query: 1203 LTFKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWS 1382
            L  KYLG+ L TKR++   + PL++K+  +ITSW+ R LS+AGR+ LIKSVL+S   FW 
Sbjct: 914  LPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWL 973

Query: 1383 QIFILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGL 1526
             +F LPK  L+ I  +   ++ +G     KK  + W  +CK K   GL
Sbjct: 974  SVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGL 1021


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  257 bits (657), Expect = 8e-66
 Identities = 155/414 (37%), Positives = 225/414 (54%), Gaps = 18/414 (4%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            K P  DG+ S FFK  W I G    A +  FF    + K +N   + L+ K    + + +
Sbjct: 42   KFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRD 101

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPI+C   +YK+ISKII  RL+ ++   I +NQ+AFV  R++ +N++L  ELVK Y + 
Sbjct: 102  YRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKD 161

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNL- 893
             ISPRC MK+D+ KA+DSV+  FL   L +L FP  F   I  C+ T T+S+ +N     
Sbjct: 162  SISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAG 221

Query: 894  ---QPKGLRQGDPLSPYLFVIIMEYLSRLL------KPWYYVPR*K------LSSSDLLM 1028
                 +GLRQG  LSPYLFVI M  LS ++      +   Y P+ K      L  +D LM
Sbjct: 222  FFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLM 281

Query: 1029 TYYYSQ--GVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGE 1202
             +   Q   V   + +    A K+   L+++L KS LY  GV    +N IL+   F  G+
Sbjct: 282  VFIDGQQRSVEGVINIFKEFAGKSG--LHISLEKSTLYLAGVSELNRNNILSAFPFASGQ 339

Query: 1203 LTFKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWS 1382
            L  +YLG+ L TK+++   + PL+DK+  KI+SW+AR LSYAGR+ LI SV+ S   FW 
Sbjct: 340  LPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWM 399

Query: 1383 QIFILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNFTDIM 1544
              + LP   ++ I  +   ++ +G     KK  + W  LCK K   GL    ++
Sbjct: 400  SAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSLL 453


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  256 bits (653), Expect = 2e-65
 Identities = 152/413 (36%), Positives = 228/413 (55%), Gaps = 18/413 (4%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            K+P  DG+ S F+K +W IIG +V   +  FF    + K +N   + L+ K K    + +
Sbjct: 190  KSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKD 249

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPI+C   LYK ISKI+  RL+ ++   I  NQ+AFV  R++ +N++L  ELVK Y + 
Sbjct: 250  YRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKD 309

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNL- 893
             IS RC MK+D+ KA+DS++  FL  VL ++ FP +FI  I  C+ T ++SI +N     
Sbjct: 310  SISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAG 369

Query: 894  ---QPKGLRQGDPLSPYLFVIIMEYLSRLL------KPWYYVPR*K--------LSSSDL 1022
                 +GLRQG  LSPYLFVI M+ LSR+L      + + Y PR K         +   +
Sbjct: 370  YFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLM 429

Query: 1023 LMTYYYSQGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGE 1202
            ++T    + V   + V    A+K    L + + K+ LY  GV    +  + ++  F  G+
Sbjct: 430  ILTDGKIRSVDGIVKVLNQFAAKLG--LKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGK 487

Query: 1203 LTFKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWS 1382
            L  +YLG+ L TKRL+   + PL+D++  +I  W++R LS+AGR+ LI SVL S   FW 
Sbjct: 488  LPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWM 547

Query: 1383 QIFILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNFTDI 1541
              F LP++ +  IN I    + +G     KK  V W+ +CKPK   GL    +
Sbjct: 548  NAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSL 600


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  254 bits (649), Expect = 7e-65
 Identities = 153/413 (37%), Positives = 232/413 (56%), Gaps = 18/413 (4%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            K+P  DG+ S F+K  W IIG + T  V  FF    + K IN   + L+ K      + +
Sbjct: 116  KSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRD 175

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPI+C   LYK+ISKII  RL+ L+   I  NQ+AFV  R++ +N++L  ELVK Y + 
Sbjct: 176  YRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKD 235

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNL- 893
             IS RC +K+D+ KA+DSV+  FL   L ++ F   FI  I  C+ T ++S+ +N   + 
Sbjct: 236  SISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVG 295

Query: 894  ---QPKGLRQGDPLSPYLFVIIMEYLSRLL------KPWYYVPR*K------LSSSDLLM 1028
                 +GLRQG  LSPYLFVI M+ LS++L      + + + P+ +      LS +D LM
Sbjct: 296  YFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLM 355

Query: 1029 TYY--YSQGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGE 1202
                  ++ +   L V      ++   L ++L KS LY  GV P ++ +I AK  F  G+
Sbjct: 356  VLSDGKTRSIEGILEVFDEFCKRSG--LRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQ 413

Query: 1203 LTFKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWS 1382
            L  +YLG+ L TKRL+   + PL++++  +I +W+ R  S+AGR  LIKSVL S   FW 
Sbjct: 414  LPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWL 473

Query: 1383 QIFILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNFTDI 1541
              F LP++ +  I+ +   ++ +GS     K  + W+ +CKPKA  GL   ++
Sbjct: 474  AAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNL 526


>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490
            [Arabidopsis thaliana]
          Length = 657

 Score =  245 bits (626), Expect = 3e-62
 Identities = 139/406 (34%), Positives = 227/406 (55%), Gaps = 16/406 (3%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            KAP  DGF   FF +AWPI+     A + +FF T  + K  N   ITL+ KV     +  
Sbjct: 10   KAPGPDGFPVEFFLEAWPIVKESFIAAIKEFFLTGHLLKGFNATAITLIPKVPGADQLNL 69

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            +RP+AC T++YK+I+++I+KRL   +D  +  NQ  F+  R++ +N++L  ELV  ++ +
Sbjct: 70   FRPVACCTTIYKVITRLISKRLNLFIDQAVQSNQVGFIKGRLLCENVLLASELVDNFQAE 129

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNL- 893
            G + R  ++VD+ KAYD+V   FL  +L +L  P  FI  I  C+ T +YSI  N   + 
Sbjct: 130  GDTSRGCLQVDLTKAYDNVNWEFLINILKALNLPPIFINWIWVCISTPSYSIAYNGELIG 189

Query: 894  ---QPKGLRQGDPLSPYLFVIIMEYLSR-----------LLKPWYYVPR-*KLSSSDLLM 1028
                 KG+RQGDP+S +LFV++M+ L+R           +L P    P    LS +D ++
Sbjct: 190  FFVGKKGIRQGDPMSSHLFVLVMDILARSLDLGAVEGRFVLHPKCLAPMITHLSFADDIL 249

Query: 1029 TYYYSQGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELT 1208
             +      +    +  +   K    L +NL K+ L   G   +    + A LG ++G L 
Sbjct: 250  VFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAASLGVSQGSLP 309

Query: 1209 FKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQI 1388
             +YLGV L ++++    +QPL+D++  + TSW+AR LS+AGR+ L+KSV+ ST  FW+ I
Sbjct: 310  VRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASI 369

Query: 1389 FILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGL 1526
            FILP + L  +  +   ++ +G+ +  ++  + W+ +C  K + GL
Sbjct: 370  FILPNQCLHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSKESGGL 415


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  245 bits (626), Expect = 3e-62
 Identities = 145/406 (35%), Positives = 234/406 (57%), Gaps = 16/406 (3%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            KA   DG++S FFK  W ++G +VT  V +FF +  + K  N  T+ L+ K+ N S +T+
Sbjct: 464  KASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTD 523

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            +RPI+C  +LYK+I+K++T RL+ L++ +I  +Q+AF+  R++S+N++L  E+V GY  K
Sbjct: 524  FRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTK 583

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTN-- 890
             IS R M+KVD++KA+DSV   F+     +L  P KF+C I  C+ T  +S+M+N ++  
Sbjct: 584  NISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSG 643

Query: 891  --LQPKGLRQGDPLSPYLFVIIMEYLSRLLKP-------WYYVPR*KLSSSDLL----MT 1031
                 KGLRQGDPLSPYLFV+ ME  S LLK         Y+     LS S L+    + 
Sbjct: 644  FFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVM 703

Query: 1032 YYYSQGVTSYLWV-QCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELT 1208
             ++  G +S   + + +    +   L+VN +K+ LY  G   +V+   ++  GF    L 
Sbjct: 704  VFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGT-DEVEALAISHYGFPISTLP 762

Query: 1209 FKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQI 1388
             +YLG+ L +++L I +++     ++ +  SW+ + LS+AGRV LI SV+     FW   
Sbjct: 763  IRYLGLPLMSRKLKISEYE-----LVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMST 817

Query: 1389 FILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGL 1526
            F+L    ++ I S+   ++ +GS D  K   + W  +C PK   G+
Sbjct: 818  FVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGV 863


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  245 bits (626), Expect = 3e-62
 Identities = 144/411 (35%), Positives = 224/411 (54%), Gaps = 16/411 (3%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            K+P  DGF S FFK++W I+G +    +  FF    + K +N   + L+ K      + +
Sbjct: 22   KSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNSTILALIPKKLESKEMKD 81

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPI+C   +YK+ISKI+  RL+ L+   I  NQ++FV  R++ +N++L  +LVK Y + 
Sbjct: 82   YRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLIENVLLATDLVKDYHKD 141

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNL- 893
             IS RC +K+D+ KA DSV+  FL   L +++FP  FI  I  C+ T ++S+ +N     
Sbjct: 142  SISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAG 201

Query: 894  ---QPKGLRQGDPLSPYLFVIIMEYLSRLLKPWY------YVPR*K------LSSSDLLM 1028
                 +GLRQG  LSPYLFVI M+ LS+LL          Y P  K      LS +D LM
Sbjct: 202  FFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKRMGLTHLSFADDLM 261

Query: 1029 TYYYSQGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELT 1208
                 Q  +    ++          L +++ KS ++  G+    + Q+     F  GEL 
Sbjct: 262  ILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELP 321

Query: 1209 FKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQI 1388
             +YLG+ L TKRLS + + PL++++  +I SWS+R LS+AGR  LI S++ S+  FW   
Sbjct: 322  IRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSA 381

Query: 1389 FILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNFTDI 1541
            F LP+  ++ I  +   ++ +G+    KK  + W  +CKPK+  GL    +
Sbjct: 382  FQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSL 432


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  245 bits (626), Expect = 3e-62
 Identities = 145/406 (35%), Positives = 234/406 (57%), Gaps = 16/406 (3%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            KA   DG++S FFK  W ++G +VT  V +FF +  + K  N  T+ L+ K+ N S +T+
Sbjct: 464  KASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTD 523

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            +RPI+C  +LYK+I+K++T RL+ L++ +I  +Q+AF+  R++S+N++L  E+V GY  K
Sbjct: 524  FRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTK 583

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTN-- 890
             IS R M+KVD++KA+DSV   F+     +L  P KF+C I  C+ T  +S+M+N ++  
Sbjct: 584  NISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSG 643

Query: 891  --LQPKGLRQGDPLSPYLFVIIMEYLSRLLKP-------WYYVPR*KLSSSDLL----MT 1031
                 KGLRQGDPLSPYLFV+ ME  S LLK         Y+     LS S L+    + 
Sbjct: 644  FFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVM 703

Query: 1032 YYYSQGVTSYLWV-QCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELT 1208
             ++  G +S   + + +    +   L+VN +K+ LY  G   +V+   ++  GF    L 
Sbjct: 704  VFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGT-DEVEALAISHYGFPISTLP 762

Query: 1209 FKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQI 1388
             +YLG+ L +++L I +++     ++ +  SW+ + LS+AGRV LI SV+     FW   
Sbjct: 763  IRYLGLPLMSRKLKISEYE-----LVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMST 817

Query: 1389 FILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGL 1526
            F+L    ++ I S+   ++ +GS D  K   + W  +C PK   G+
Sbjct: 818  FVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGV 863


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  245 bits (625), Expect = 4e-62
 Identities = 141/411 (34%), Positives = 214/411 (52%), Gaps = 16/411 (3%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            K+P  DG+ S FFK  W + G    A +  FF    + K +N   + L+ K      + +
Sbjct: 766  KSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKD 825

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPI+C   LYK+ISKI+  RL+ L+   I +NQ+AFV  R++ +N++L  ELVK Y ++
Sbjct: 826  YRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKE 885

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLNDTNL- 893
             ++PRC MK+D+ KA+DSV+  FL   L +L FP  F   I  C+ T T+S+ +N     
Sbjct: 886  SVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAG 945

Query: 894  ---QPKGLRQGDPLSPYLFVIIMEYLSRLLKP-------WYYVPR*KLSSSDLLMTYYYS 1043
                 +GLRQG  LSPYLFVI M  LS ++          Y+    K+  + L       
Sbjct: 946  FFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLM 1005

Query: 1044 QGVTSYLW-----VQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELT 1208
              V  + W     +           L ++L KS +Y  GV    + Q L+   F  G+L 
Sbjct: 1006 VFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLP 1065

Query: 1209 FKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQI 1388
             +YLG+ L TK+++   + PL++ +  KI+SW+AR LSYAGR+ L+ SV+ S   FW   
Sbjct: 1066 VRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSA 1125

Query: 1389 FILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPKAARGLNFTDI 1541
            + LP   +  I  +   ++ +G     KK  + W  +C+PK   GL    +
Sbjct: 1126 YRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSL 1176


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  243 bits (619), Expect = 2e-61
 Identities = 143/401 (35%), Positives = 224/401 (55%), Gaps = 16/401 (3%)
 Frame = +3

Query: 357  KAPWCDGFNS*FFKKAWPIIGYQVTAVVLKFFDTVIICKAINCATITLVSKVKNPSSVTE 536
            K+P  DG+ + F+K AW IIG +    +  FF    + K IN   + L+ K K    + +
Sbjct: 357  KSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKD 416

Query: 537  YRPIACYTSLYKLISKIITKRLQGLMDYLIHRNQTAFVSVRMISDNIILRHELVKGYERK 716
            YRPI+C   LYK+ISKII  RL+ ++   I  NQ+AFV  R++ +N++L  E+VK Y + 
Sbjct: 417  YRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKD 476

Query: 717  GISPRCMMKVDMQKAYDSVE*PFLEQVLNSLYFPVKFIC*IMACVKTVTYSIMLN----D 884
             +S RC +K+D+ KA+DSV+  FL  VL ++ FP +F   I  C+ T ++S+ +N     
Sbjct: 477  SVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAG 536

Query: 885  TNLQPKGLRQGDPLSPYLFVIIMEYLSRLL------KPWYYVPR*K------LSSSDLLM 1028
                 + LRQG  LSPYLFVI M+ LS++L      + + Y P+ +      LS +D LM
Sbjct: 537  VFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLM 596

Query: 1029 TYYYSQGVTSYLWVQCMIASKNSQMLNVNLNKSCLYFGGVKPDVQNQILAKLGFTKGELT 1208
                 +  +    V+ +        L +++ KS +Y  GV+  V  +I+ K  F  G+L 
Sbjct: 597  ILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLP 656

Query: 1209 FKYLGVTLSTKRLSILKFQPLMDKMLHKITSWSARLLSYAGRV*LIKSVLNSTKAFWSQI 1388
             +YLG+ L +KRL+     PL++++  KI +W++R LS+AGR+ LI S L S   FW   
Sbjct: 657  VRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAA 716

Query: 1389 FILPKKVLEMINSIRKGYI*TGSTDKIKKTLVFWEHLCKPK 1511
            F LP+  +  I+ +   ++ +G+     K  V WE +CKPK
Sbjct: 717  FRLPRACIREIDKLCSAFLWSGTELSSNKAKVSWEAICKPK 757