BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00024566
         (592 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   285   2e-87
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   287   2e-87
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   287   3e-87
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   282   1e-86
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   282   6e-86
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   234   6e-68
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   233   2e-67
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   233   2e-67
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   233   2e-67
gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobrom...   231   5e-65
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   216   2e-64
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   218   6e-63
emb|CBI27412.3| unnamed protein product [Vitis vinifera]              218   6e-63
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   213   1e-60
ref|XP_006602976.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   209   5e-59
emb|CBL87031.1| RNA polymerase [Nuphar advena]                        206   1e-58
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   211   4e-58
ref|XP_003530460.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   208   4e-58
ref|XP_006585822.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   208   4e-58
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   211   4e-58

>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  285 bits (729), Expect(2) = 2e-87
 Identities = 144/162 (88%), Positives = 152/162 (93%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG DHGTARVVQAAL+IGDAIEQEVRIH FLEKTKKQKAEK+ + ED
Sbjct: 267 AVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED 326

Query: 287 GEHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQTA 466
           GEHVTQEQEKLRKKVT+LMKKQKLRAV QIVR QDDSKPWGQD +AKVGSRLI+ LLQTA
Sbjct: 327 GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTA 386

Query: 467 YIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           YIQ PA+QLAVDPPDIRPAF+HSVRTVAKETK ASRRYGIIQ
Sbjct: 387 YIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQ 428



 Score = 64.3 bits (155), Expect(2) = 2e-87
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRDKI EEQE CS GKSKAAY+KYF+QLP DMM
Sbjct: 232 EPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMM 266


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  287 bits (734), Expect(2) = 2e-87
 Identities = 146/162 (90%), Positives = 152/162 (93%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG DHGTARVVQAAL+IGDAIEQEVRIH FLEKTKKQKAEK+ + ED
Sbjct: 268 AVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED 327

Query: 287 GEHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQTA 466
           GEHVTQEQEKLRKKVT+LMKKQKLRAV QIVR QDDSKPWGQD KAKVGSRLIE LLQTA
Sbjct: 328 GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTA 387

Query: 467 YIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           YIQ PA+QLAVDPPDIRPAF+HSVRTVAKETK ASRRYGIIQ
Sbjct: 388 YIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQ 429



 Score = 62.0 bits (149), Expect(2) = 2e-87
 Identities = 28/35 (80%), Positives = 30/35 (85%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRDKI EEQE CS GKSKAAY+KY +QLP DMM
Sbjct: 233 EPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMM 267


>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 1019

 Score =  287 bits (734), Expect(2) = 3e-87
 Identities = 146/162 (90%), Positives = 151/162 (93%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG +HG ARVVQAAL IGDAIEQEVRIHKFLEKT+K KAEK+ KMED
Sbjct: 266 AVITMHKLMGLLMTGGEHGNARVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRKMED 325

Query: 287 GEHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQTA 466
           GEH T EQ+KL KKVTSLMKKQKLRAVNQIVRSQDDSKPWGQD KAKVGSRLIEFLLQTA
Sbjct: 326 GEHATLEQKKLHKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTA 385

Query: 467 YIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           YIQSPADQLAVDPPDIRPAFIHS RTVAKETK ASRRYG+IQ
Sbjct: 386 YIQSPADQLAVDPPDIRPAFIHSTRTVAKETKSASRRYGVIQ 427



 Score = 61.6 bits (148), Expect(2) = 3e-87
 Identities = 28/35 (80%), Positives = 29/35 (82%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRDKI +EQE C  GKSKAAYSKYFH LP DMM
Sbjct: 231 EPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMM 265


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  282 bits (722), Expect(2) = 1e-86
 Identities = 143/162 (88%), Positives = 151/162 (93%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG DHGTARVVQAAL+IGDAIEQEVRIH FLEKTKKQKAEK+ + ED
Sbjct: 267 AVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKED 326

Query: 287 GEHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQTA 466
           GEHVTQEQEKLRKKVT+LMKKQKLRAV QIVR QDDSKPWGQD +AKVGSRLI+ LLQTA
Sbjct: 327 GEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTA 386

Query: 467 YIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           YIQ PA+QLAVDPPDI PAF+HSVRTVAKETK ASRRYGIIQ
Sbjct: 387 YIQPPANQLAVDPPDIPPAFVHSVRTVAKETKSASRRYGIIQ 428



 Score = 64.3 bits (155), Expect(2) = 1e-86
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRDKI EEQE CS GKSKAAY+KYF+QLP DMM
Sbjct: 232 EPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMM 266


>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like [Solanum lycopersicum]
          Length = 1022

 Score =  282 bits (722), Expect(2) = 6e-86
 Identities = 143/162 (88%), Positives = 149/162 (91%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG +HG  RVVQAAL IGDAIEQEVRIHKFLEKT+K KAEK+  MED
Sbjct: 269 AVITMHKLMGLLMTGGEHGNVRVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRNMED 328

Query: 287 GEHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQTA 466
           GEH T EQ+KL KKVTSLMKKQKLRAVNQIVRSQDDSKPWGQD KAKVGSRLIEFLLQTA
Sbjct: 329 GEHATLEQKKLHKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTA 388

Query: 467 YIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           YIQSPADQLAVDPPDIRPAFIHS RT+AKETK ASRRYG+IQ
Sbjct: 389 YIQSPADQLAVDPPDIRPAFIHSTRTLAKETKSASRRYGVIQ 430



 Score = 61.6 bits (148), Expect(2) = 6e-86
 Identities = 28/35 (80%), Positives = 29/35 (82%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRDKI +EQE C  GKSKAAYSKYFH LP DMM
Sbjct: 234 EPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMM 268


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  234 bits (597), Expect(2) = 6e-68
 Identities = 121/165 (73%), Positives = 138/165 (83%), Gaps = 3/165 (1%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG +HG ARVVQAA IIGDAIEQEVRIHKFLEKTKK+   KN + E+
Sbjct: 270 AVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEE 329

Query: 287 GEH---VTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLL 457
           G+    VT EQEKLRKKVT L+KKQKL AV +IV+ QDD KPWGQD +AKVGSR+IE L 
Sbjct: 330 GDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLT 389

Query: 458 QTAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           QTAYIQSPADQLA  PPDI PAF H++RTV+KETK  S++YG+I+
Sbjct: 390 QTAYIQSPADQLADAPPDIFPAFTHALRTVSKETKGGSKKYGVIE 434



 Score = 49.7 bits (117), Expect(2) = 6e-68
 Identities = 22/35 (62%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I +EQE C + K K AY+ YF QLP DMM
Sbjct: 235 EPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMM 269


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533045|gb|ESR44228.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  233 bits (593), Expect(2) = 2e-67
 Identities = 120/165 (72%), Positives = 137/165 (83%), Gaps = 3/165 (1%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG +HG ARVVQAA IIGDAIEQEVRIHKFLEKTKK+   KN + E+
Sbjct: 274 AVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEE 333

Query: 287 GEH---VTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLL 457
           G+    VT EQEKLRKKVT L+KKQKL AV +IV+ QDD KPWGQD +AKVGSR+IE L 
Sbjct: 334 GDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLT 393

Query: 458 QTAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           QTAYIQSPADQL   PPDI PAF H++RTV+KETK  S++YG+I+
Sbjct: 394 QTAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIE 438



 Score = 49.7 bits (117), Expect(2) = 2e-67
 Identities = 22/35 (62%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I +EQE C + K K AY+ YF QLP DMM
Sbjct: 239 EPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMM 273


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533044|gb|ESR44227.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  233 bits (593), Expect(2) = 2e-67
 Identities = 120/165 (72%), Positives = 137/165 (83%), Gaps = 3/165 (1%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG +HG ARVVQAA IIGDAIEQEVRIHKFLEKTKK+   KN + E+
Sbjct: 274 AVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEE 333

Query: 287 GEH---VTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLL 457
           G+    VT EQEKLRKKVT L+KKQKL AV +IV+ QDD KPWGQD +AKVGSR+IE L 
Sbjct: 334 GDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLT 393

Query: 458 QTAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           QTAYIQSPADQL   PPDI PAF H++RTV+KETK  S++YG+I+
Sbjct: 394 QTAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIE 438



 Score = 49.7 bits (117), Expect(2) = 2e-67
 Identities = 22/35 (62%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I +EQE C + K K AY+ YF QLP DMM
Sbjct: 239 EPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMM 273


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533046|gb|ESR44229.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  233 bits (593), Expect(2) = 2e-67
 Identities = 120/165 (72%), Positives = 137/165 (83%), Gaps = 3/165 (1%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG +HG ARVVQAA IIGDAIEQEVRIHKFLEKTKK+   KN + E+
Sbjct: 274 AVITMHKLMGLLMTGGEHGRARVVQAACIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEE 333

Query: 287 GEH---VTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLL 457
           G+    VT EQEKLRKKVT L+KKQKL AV +IV+ QDD KPWGQD +AKVGSR+IE L 
Sbjct: 334 GDESNTVTTEQEKLRKKVTDLIKKQKLPAVRRIVKGQDDFKPWGQDARAKVGSRVIELLT 393

Query: 458 QTAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           QTAYIQSPADQL   PPDI PAF H++RTV+KETK  S++YG+I+
Sbjct: 394 QTAYIQSPADQLVDAPPDIFPAFTHTLRTVSKETKGGSKKYGVIE 438



 Score = 49.7 bits (117), Expect(2) = 2e-67
 Identities = 22/35 (62%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I +EQE C + K K AY+ YF QLP DMM
Sbjct: 239 EPLRDAIAKEQERCRMAKHKVAYAPYFDQLPADMM 273


>gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1100

 Score =  231 bits (589), Expect(2) = 5e-65
 Identities = 118/164 (71%), Positives = 135/164 (82%), Gaps = 2/164 (1%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG +HG ARVVQAA +IGDAIEQEVRIHKFLEKTKK++ +K  + E 
Sbjct: 277 AVITMHKLMGLLMTGGEHGCARVVQAACLIGDAIEQEVRIHKFLEKTKKKRVDKKNEDEG 336

Query: 287 GEHVTQ--EQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQ 460
            +   +  EQEKLRKKVT L+KKQKL AV QIV+ QDD+KPWGQD KAKVGS LIE L+Q
Sbjct: 337 DKPNAEIKEQEKLRKKVTDLIKKQKLPAVRQIVKGQDDTKPWGQDAKAKVGSHLIELLMQ 396

Query: 461 TAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           TAYIQ PADQLA  PPD+RPAF+HS+RTV KE K   RRYG+I+
Sbjct: 397 TAYIQPPADQLADCPPDVRPAFVHSLRTVVKENKKTGRRYGVIE 440



 Score = 43.1 bits (100), Expect(2) = 5e-65
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDM 104
           EPLRD I +EQE   LGK +A Y+ Y  QLP DM
Sbjct: 242 EPLRDAIIKEQELYRLGKLRAGYAGYLDQLPADM 275


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score =  216 bits (550), Expect(2) = 2e-64
 Identities = 110/165 (66%), Positives = 132/165 (80%), Gaps = 3/165 (1%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           +VITMHKL+GLLMTG +HG+ RVVQAA +IGDAIEQEVRIH FLEKTK++K  K+  +E 
Sbjct: 279 SVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEG 338

Query: 287 G--EHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQ 460
           G  + V  EQEKLRKKVT+LMKKQKL A  QIV+  D+SKPWG + KAKVGSRLIE L+Q
Sbjct: 339 GGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQ 398

Query: 461 TAYIQSPAD-QLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           TAYIQ P D QLA  PPDIRPAF+H+ +TV +E K   RR+G+I+
Sbjct: 399 TAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIE 443



 Score = 56.2 bits (134), Expect(2) = 2e-64
 Identities = 25/35 (71%), Positives = 28/35 (80%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I +EQE C LGK+KAAY+ YF QLP DMM
Sbjct: 244 EPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMM 278


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score =  218 bits (556), Expect(2) = 6e-63
 Identities = 110/162 (67%), Positives = 130/162 (80%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG  +G+ARVVQAA  IG+AIE EVRI +F+EKTKK+ A  N     
Sbjct: 225 AVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG 284

Query: 287 GEHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQTA 466
              VT+EQEKLRKKV+ LMKKQKL+ V QIV+ QDDSKPWGQD   KVGSRLIE L++TA
Sbjct: 285 SNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETA 344

Query: 467 YIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           YIQ PADQL   PPDIRPAF+H+++TV KET+  +RRYG+I+
Sbjct: 345 YIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIE 386



 Score = 48.9 bits (115), Expect(2) = 6e-63
 Identities = 21/35 (60%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I  EQ+ C  GK++AAY+ YF  LP DMM
Sbjct: 190 EPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMM 224


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score =  218 bits (556), Expect(2) = 6e-63
 Identities = 110/162 (67%), Positives = 130/162 (80%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTG  +G+ARVVQAA  IG+AIE EVRI +F+EKTKK+ A  N     
Sbjct: 57  AVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGG 116

Query: 287 GEHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQTA 466
              VT+EQEKLRKKV+ LMKKQKL+ V QIV+ QDDSKPWGQD   KVGSRLIE L++TA
Sbjct: 117 SNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETA 176

Query: 467 YIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           YIQ PADQL   PPDIRPAF+H+++TV KET+  +RRYG+I+
Sbjct: 177 YIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIE 218



 Score = 48.9 bits (115), Expect(2) = 6e-63
 Identities = 21/35 (60%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I  EQ+ C  GK++AAY+ YF  LP DMM
Sbjct: 22  EPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMM 56


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  213 bits (542), Expect(2) = 1e-60
 Identities = 107/162 (66%), Positives = 129/162 (79%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           +VITMHKLMGLLMTG +HGT RVV AA  IG+AIEQEVRIHKFLE T+K+K +K+ +  +
Sbjct: 271 SVITMHKLMGLLMTGGEHGTCRVVAAACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGE 330

Query: 287 GEHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQTA 466
            +   +E+EKL KKVT+LMKKQKL+AV  IV   D SK W  + +AKVGSRLIE L QTA
Sbjct: 331 SDAAKKEREKLNKKVTNLMKKQKLKAVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTA 390

Query: 467 YIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           +IQ PADQLA  PPDIRPAF+H+ RTVAK+ K ASRRYG+I+
Sbjct: 391 FIQPPADQLADGPPDIRPAFVHTFRTVAKDAKNASRRYGVIE 432



 Score = 46.6 bits (109), Expect(2) = 1e-60
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLR+ I +EQ+ C  GK+K AY+ Y  QLP DMM
Sbjct: 236 EPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMM 270


>ref|XP_006602976.1| PREDICTED: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like isoform X1 [Glycine
           max]
          Length = 1046

 Score =  209 bits (532), Expect(2) = 5e-59
 Identities = 113/167 (67%), Positives = 132/167 (79%), Gaps = 5/167 (2%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDH---GTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMK 277
           AVI MHKLMGLLMTG++    GTARVVQAA  IGDAIE EVRIHKFLEKTKK+K +++ K
Sbjct: 288 AVIAMHKLMGLLMTGNERVTIGTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSNK 347

Query: 278 MEDGEHVT--QEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEF 451
            + GE V   +E++KLRKKV  LMKKQKL AV  +V+ +DD+KPWG  +K KVGSRLIE 
Sbjct: 348 NKAGESVADIKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDDTKPWGAVIKTKVGSRLIEL 407

Query: 452 LLQTAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           LLQTAYIQ P+DQL    PDIRPAF+HS +TV KE+  ASRRYGIIQ
Sbjct: 408 LLQTAYIQPPSDQLPDAAPDIRPAFVHSFKTVTKESIKASRRYGIIQ 454



 Score = 45.1 bits (105), Expect(2) = 5e-59
 Identities = 21/35 (60%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I +EQE  S GK++ AY+ YF QLP D M
Sbjct: 253 EPLRDAIVKEQEMYSEGKNRMAYAPYFVQLPADKM 287


>emb|CBL87031.1| RNA polymerase [Nuphar advena]
          Length = 990

 Score =  206 bits (523), Expect(2) = 1e-58
 Identities = 105/162 (64%), Positives = 124/162 (76%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKL+GL+MT  DHG ARVVQAA  IGDAIE E RIH FLEKTKK+ A  NM  E+
Sbjct: 244 AVITMHKLVGLMMTSGDHGCARVVQAACRIGDAIENESRIHSFLEKTKKKHARGNMAEEE 303

Query: 287 GEHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQTA 466
            E VT+E+E LRKKVT+L+KKQKLR V ++V+ +DDS PWG +  AKVG  LIE L++TA
Sbjct: 304 PETVTKEKEFLRKKVTNLIKKQKLRQVTKLVKGKDDSAPWGVEAHAKVGCHLIELLIETA 363

Query: 467 YIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           YIQ P DQ    PPDIRPAF HS+R V+KE    SRRYG+I+
Sbjct: 364 YIQPPLDQTVDGPPDIRPAFRHSLRNVSKEQSSNSRRYGVIE 405



 Score = 47.0 bits (110), Expect(2) = 1e-58
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD+I  EQE C  GK +AAY  Y ++LP +MM
Sbjct: 209 EPLRDRIASEQEACRRGKCRAAYGPYLNRLPAEMM 243


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
           gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
           Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
           single subunit RNA polymerase [Oryza sativa Japonica
           Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
           sativa Japonica Group]
          Length = 1017

 Score =  211 bits (538), Expect(2) = 4e-58
 Identities = 108/164 (65%), Positives = 130/164 (79%), Gaps = 2/164 (1%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTGS  G+ RV+QAA  IG+AIE EVRIHKFLEKTKK+  ++    E+
Sbjct: 262 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEE 321

Query: 287 G--EHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQ 460
           G    + +EQE+LRKKVT LMKKQK+R V  IV+ QD+SKPWGQD  AKVGSRLIE +++
Sbjct: 322 GGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIE 381

Query: 461 TAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           TAYIQ PA Q A  PPDIRPAF H +RTVA+E + +SRRYG+I+
Sbjct: 382 TAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIK 425



 Score = 39.7 bits (91), Expect(2) = 4e-58
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD+I  EQE      ++A++++YF+ LP DMM
Sbjct: 227 EPLRDQIIAEQELVGERGARASHARYFNMLPADMM 261


>ref|XP_003530460.1| PREDICTED: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like isoform X1 [Glycine
           max]
          Length = 1015

 Score =  208 bits (530), Expect(2) = 4e-58
 Identities = 111/167 (66%), Positives = 131/167 (78%), Gaps = 5/167 (2%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDH---GTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMK 277
           AVI MHKLMGLLMTG++H   GTARVVQAA  IGDAIE EVRIHKFLEKTKK+K +++ K
Sbjct: 257 AVIAMHKLMGLLMTGTEHATVGTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSKK 316

Query: 278 MEDGEHVT--QEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEF 451
            +  E V   +E++KLRKKV  LMKKQKL AV  +V+ +DD+KPWG  +K KVGSRLIE 
Sbjct: 317 NKASESVADIKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDDTKPWGAAIKTKVGSRLIEL 376

Query: 452 LLQTAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           L+QTAYIQ P DQL    PDIRPAF+HS RTVAK +  AS+RYGI+Q
Sbjct: 377 LMQTAYIQPPPDQLLDAAPDIRPAFVHSFRTVAKVSAKASKRYGIVQ 423



 Score = 42.7 bits (99), Expect(2) = 4e-58
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I +EQE    GK++ AY  YF QLP D M
Sbjct: 222 EPLRDAIVKEQEMYGEGKNRTAYVPYFVQLPADKM 256


>ref|XP_006585822.1| PREDICTED: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like isoform X2 [Glycine
           max]
          Length = 998

 Score =  208 bits (530), Expect(2) = 4e-58
 Identities = 111/167 (66%), Positives = 131/167 (78%), Gaps = 5/167 (2%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDH---GTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMK 277
           AVI MHKLMGLLMTG++H   GTARVVQAA  IGDAIE EVRIHKFLEKTKK+K +++ K
Sbjct: 257 AVIAMHKLMGLLMTGTEHATVGTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSKK 316

Query: 278 MEDGEHVT--QEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEF 451
            +  E V   +E++KLRKKV  LMKKQKL AV  +V+ +DD+KPWG  +K KVGSRLIE 
Sbjct: 317 NKASESVADIKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDDTKPWGAAIKTKVGSRLIEL 376

Query: 452 LLQTAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           L+QTAYIQ P DQL    PDIRPAF+HS RTVAK +  AS+RYGI+Q
Sbjct: 377 LMQTAYIQPPPDQLLDAAPDIRPAFVHSFRTVAKVSAKASKRYGIVQ 423



 Score = 42.7 bits (99), Expect(2) = 4e-58
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD I +EQE    GK++ AY  YF QLP D M
Sbjct: 222 EPLRDAIVKEQEMYGEGKNRTAYVPYFVQLPADKM 256


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  211 bits (538), Expect(2) = 4e-58
 Identities = 108/164 (65%), Positives = 130/164 (79%), Gaps = 2/164 (1%)
 Frame = +2

Query: 107 AVITMHKLMGLLMTGSDHGTARVVQAALIIGDAIEQEVRIHKFLEKTKKQKAEKNMKMED 286
           AVITMHKLMGLLMTGS  G+ RV+QAA  IG+AIE EVRIHKFLEKTKK+  ++    E+
Sbjct: 228 AVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEE 287

Query: 287 G--EHVTQEQEKLRKKVTSLMKKQKLRAVNQIVRSQDDSKPWGQDVKAKVGSRLIEFLLQ 460
           G    + +EQE+LRKKVT LMKKQK+R V  IV+ QD+SKPWGQD  AKVGSRLIE +++
Sbjct: 288 GGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIE 347

Query: 461 TAYIQSPADQLAVDPPDIRPAFIHSVRTVAKETKIASRRYGIIQ 592
           TAYIQ PA Q A  PPDIRPAF H +RTVA+E + +SRRYG+I+
Sbjct: 348 TAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIK 391



 Score = 39.7 bits (91), Expect(2) = 4e-58
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +3

Query: 3   EPLRDKITEEQEFCSLGKSKAAYSKYFHQLPVDMM 107
           EPLRD+I  EQE      ++A++++YF+ LP DMM
Sbjct: 193 EPLRDQIIAEQELVGERGARASHARYFNMLPADMM 227