BLASTX nr result
ID: Atropa21_contig00024526
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00024526
(587 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006351939.1| PREDICTED: uncharacterized protein LOC102581... 54 1e-13
ref|XP_006357928.1| PREDICTED: uncharacterized protein LOC102592... 65 2e-13
ref|XP_004299997.1| PREDICTED: putative ribonuclease H protein A... 44 1e-07
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 50 1e-06
ref|XP_004305448.1| PREDICTED: putative ribonuclease H protein A... 41 4e-06
ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein A... 38 6e-06
>ref|XP_006351939.1| PREDICTED: uncharacterized protein LOC102581206 [Solanum tuberosum]
Length = 307
Score = 53.9 bits (128), Expect(3) = 1e-13
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = -3
Query: 534 INVVWSPTPSGFFKLNIDGAFCHKNNNGGTGGVFINSTGNWILGYCQRH 388
I+ W P P G +KLN DG F + GG GGVF + GNW +G+ Q+H
Sbjct: 136 IHARWKPPPHGLYKLNFDGFFSAPSLVGGLGGVFRDEYGNWKMGFYQQH 184
Score = 39.7 bits (91), Expect(3) = 1e-13
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = -2
Query: 313 GLSIEVIQLLEKPHPTYHN-------LIEMCRSLLKKLGNSVVRHNFREGNKIADALAKT 155
G S+E++ LL YH+ + + R LKKL N + HNFR+GNK+ LA
Sbjct: 189 GTSMELLALLRGIELAYHHNLFHWQSKLTLLRYWLKKLQNPPINHNFRDGNKVEHHLA-N 247
Query: 154 EPRYPHINS 128
E R NS
Sbjct: 248 EARTTSTNS 256
Score = 28.1 bits (61), Expect(3) = 1e-13
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 143 SSYKQLAMLVSPPIDALTFLHEDKDGVESTKLVSASLCNSLAIVGN 6
S+ M SP ++ L D G STK VS + C +LA +GN
Sbjct: 253 STNSNFVMFCSPLTGVISSLAADVAGHISTKKVSLATCINLAKLGN 298
>ref|XP_006357928.1| PREDICTED: uncharacterized protein LOC102592611 [Solanum tuberosum]
Length = 356
Score = 65.1 bits (157), Expect(2) = 2e-13
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = -2
Query: 307 SIEVIQLLEKPHPTYHNLIEMCRSLLKKLGNSVVRHNFREGNKIADALAK 158
S EVI+L HP + +E CRSLL++LGN VVRHNFR+GN +AD LAK
Sbjct: 224 STEVIKLFNYAHPNCQSTVESCRSLLRRLGNPVVRHNFRQGNMLADFLAK 273
Score = 36.2 bits (82), Expect(2) = 2e-13
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -1
Query: 161 KDGTKISSYKQLAMLVSPPIDALTFLHEDKDGVESTKLVSASLCNSLAIVGNL 3
K+G+ + +LV+ P A L DK+G +TK++S S LA++GNL
Sbjct: 273 KEGSLLELNNDDHILVAAPAGARPILKADKNGETTTKVISLSTITKLAMLGNL 325
>ref|XP_004299997.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 448
Score = 43.9 bits (102), Expect(2) = 1e-07
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 570 TTNDVQPMSHNHINVV---WSPTPSGFFKLNIDGAFCHKNNNGGTGGVFINSTGNWILGY 400
T+ P S N NV W P+ KLNIDG + G GGV + GNWI G
Sbjct: 257 TSAQSNPSSSNMFNVTYLSWLRPPANCLKLNIDGTRSSSSGKIGAGGVLRDHAGNWIFG- 315
Query: 399 CQRHL 385
CQ +L
Sbjct: 316 CQINL 320
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = -2
Query: 367 YCKDFKLLTQDSSSLLK*GLSIEVIQLLEKPHPTYH---NLIEMCRSLLKKLGNSVVRHN 197
YC D ++ + S++L +QL++K H +L+ C S + K+ N + H
Sbjct: 344 YCSDLEV--ESDSAVL--------VQLMQKRSFELHPLGSLLSACSSFMSKMPNVKLSHI 393
Query: 196 FREGNKIADALAK 158
FRE N +AD+LAK
Sbjct: 394 FRECNMVADSLAK 406
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 50.4 bits (119), Expect(2) = 1e-06
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -3
Query: 522 WSPTPSGFFKLNIDGAFCHKNNNGGTGGVFINSTGNWILGYCQR 391
W P GF KLN DGA+ N G GGVF ++ GNW LG+ +R
Sbjct: 1198 WKPPHQGFLKLNTDGAWKADWENAGIGGVFRDAVGNWELGFAKR 1241
Score = 28.1 bits (61), Expect(2) = 1e-06
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = -2
Query: 298 VIQLLEKP-----HPTYHNLIEMCRSLLKKLGNSVVRHNFREGNKIADALA 161
V+QLL KP HP ++++C LL + + H REGNK+A LA
Sbjct: 1279 VVQLLAKPLEAENHPLGVIVMDIC-ILLTRHWSVEFLHIKREGNKVAHCLA 1328
>ref|XP_004305448.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 171
Score = 41.2 bits (95), Expect(2) = 4e-06
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = -3
Query: 510 PSGFFKLNIDGAFCHKNNNGGTGGVFINSTGNWILGY 400
P FFKLNIDG + G GGV N G WI+G+
Sbjct: 3 PLNFFKLNIDGTRATASGKIGAGGVIRNHAGTWIIGF 39
Score = 35.4 bits (80), Expect(2) = 4e-06
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = -2
Query: 298 VIQLLEKPHPTYH---NLIEMCRSLLKKLGNSVVRHNFREGNKIADALAKT 155
++ L++ + H +L++ C L+ ++ N+ + H FRE N ADALAK+
Sbjct: 80 LVNLMQSSNLALHPLGSLLDGCCKLMSRMENAKLSHIFRESNMTADALAKS 130
>ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 411
Score = 38.1 bits (87), Expect(2) = 6e-06
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Frame = -2
Query: 298 VIQLLEKPHPTYH---NLIEMCRSLLKKLGNSVVRHNFREGNKIADALAK 158
++QL+ K H +L++ C ++ KL N ++H FRE N +ADALAK
Sbjct: 320 LVQLMLKSDTGVHPFGSLLDSCSVMMSKLLNVNIKHIFRECNMVADALAK 369
Score = 37.7 bits (86), Expect(2) = 6e-06
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 522 WSPTPSGFFKLNIDGAFCHKNNNGGTGGVFINSTGNWILGY 400
W P F+KLNIDG+ + G GGV + G WI G+
Sbjct: 239 WCKPPENFYKLNIDGSRSFSSGCIGAGGVLRDHLGIWIDGF 279