BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00024107
         (550 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006348039.1| PREDICTED: pentatricopeptide repeat-containi...   198   8e-49
ref|XP_004252011.1| PREDICTED: pentatricopeptide repeat-containi...   178   9e-43
gb|ABA39836.1| putative DNA-binding protein [Solanum lycopersicum]     90   3e-16
ref|XP_006362268.1| PREDICTED: pentatricopeptide repeat-containi...    89   5e-16
ref|XP_002308888.2| hypothetical protein POPTR_0006s03790g [Popu...    72   1e-10
emb|CBI30135.3| unnamed protein product [Vitis vinifera]               71   2e-10
ref|XP_002322619.2| hypothetical protein POPTR_0016s03540g [Popu...    69   7e-10
ref|XP_004303594.1| PREDICTED: pentatricopeptide repeat-containi...    67   3e-09
gb|EOY08857.1| Pentatricopeptide repeat-containing protein isofo...    65   1e-08
ref|XP_006482077.1| PREDICTED: pentatricopeptide repeat-containi...    62   1e-07
gb|EOY08858.1| Pentatricopeptide repeat-containing protein isofo...    59   1e-06
ref|XP_002535692.1| conserved hypothetical protein [Ricinus comm...    58   2e-06

>ref|XP_006348039.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Solanum tuberosum]
          Length = 624

 Score =  198 bits (503), Expect = 8e-49
 Identities = 116/169 (68%), Positives = 128/169 (75%), Gaps = 8/169 (4%)
 Frame = -3

Query: 485 MWAIRRASSSYKKQVFMTGASRICYATSEISSQYLKGHNEGA---SNVISHRPLIFRGFQ 315
           MWA+RRASSS+KKQVFMTG SRICYATS+ISSQ LKGHN+G    SNVISHRPL +RGFQ
Sbjct: 1   MWAVRRASSSFKKQVFMTGGSRICYATSDISSQCLKGHNDGLKGDSNVISHRPLTYRGFQ 60

Query: 314 LKSH---RLSMERGCFSSQAGTKXXXXXXXXXXXXXXELESSTATEAIQEANKVDASVSE 144
           + SH   R+  E   FSSQAGTK              ELESSTATEAIQE NKVD SVSE
Sbjct: 61  ITSHGFLRVFRESRSFSSQAGTKRSGEEDSSSDDGFSELESSTATEAIQEVNKVDESVSE 120

Query: 143 QELSEEDL--ENVEAPQELELSDTETEVSKPKSSKERVSSALFNAIVAA 3
            ELSEEDL  E+VEAPQEL LSDTE E++K KS +  VSSALFNAI+AA
Sbjct: 121 HELSEEDLDGEDVEAPQEL-LSDTEAEINKRKSPRNGVSSALFNAIMAA 168


>ref|XP_004252011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial [Solanum lycopersicum]
          Length = 624

 Score =  178 bits (451), Expect = 9e-43
 Identities = 104/169 (61%), Positives = 123/169 (72%), Gaps = 8/169 (4%)
 Frame = -3

Query: 485 MWAIRRASSSYKKQVFMTGASRICYATSEISSQYLKGHNEGA---SNVISHRPLIFRGFQ 315
           MWA+RRASSS+KKQVF+TG SRICY+T +I+S  LKGHN+G    SNVISHR L   G+Q
Sbjct: 1   MWAVRRASSSFKKQVFITGGSRICYSTLDITSHCLKGHNDGLKGDSNVISHRALTLGGYQ 60

Query: 314 LKSH---RLSMERGCFSSQAGTKXXXXXXXXXXXXXXELESSTATEAIQEANKVDASVSE 144
           + SH   R+  E   FSSQAGTK              ELESS+ATEAIQE NKVD SVSE
Sbjct: 61  ITSHGFLRVFKESRSFSSQAGTKSSGEEDSNSDDGFSELESSSATEAIQEVNKVDESVSE 120

Query: 143 QELSEEDL--ENVEAPQELELSDTETEVSKPKSSKERVSSALFNAIVAA 3
            E+S+EDL  E+VEAPQEL LSDTE E++K KS +  VSSALFNA++AA
Sbjct: 121 HEISDEDLDGEDVEAPQEL-LSDTEAEINKRKSPRNGVSSALFNAVMAA 168


>gb|ABA39836.1| putative DNA-binding protein [Solanum lycopersicum]
          Length = 156

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 51/71 (71%), Positives = 60/71 (84%), Gaps = 2/71 (2%)
 Frame = -3

Query: 209 LESSTATEAIQEANKVDASVSEQELSEEDL--ENVEAPQELELSDTETEVSKPKSSKERV 36
           LESS+ATEAIQE NKVD SVSE E+S+EDL  E+VEAPQEL LSDTE E++K KS +  V
Sbjct: 23  LESSSATEAIQEVNKVDESVSEHEISDEDLDGEDVEAPQEL-LSDTEAEINKRKSPRNGV 81

Query: 35  SSALFNAIVAA 3
           SSALFNA++AA
Sbjct: 82  SSALFNAVMAA 92


>ref|XP_006362268.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Solanum tuberosum]
          Length = 613

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
 Frame = -3

Query: 485 MWAIRRASSSYKKQVFMTGASRICYATSEISSQYLKGHNEGASNVISHRPLIFRGFQLKS 306
           MWAIRR+SSS KKQ F++ +SRI    ++++ +Y +G++EG SN IS + L FRGF   +
Sbjct: 1   MWAIRRSSSSLKKQGFISRSSRIRCMMNKVTGRYSEGNSEGISNEISDQYLSFRGFCKTA 60

Query: 305 HRLSMERG---CFSSQAGTKXXXXXXXXXXXXXXELESSTATEAIQEANKVDASVSEQEL 135
           H   +  G    F S  GTK              EL   T T+ + E N V+A + + ++
Sbjct: 61  HGSKLFLGWKKIFFSLVGTKSSSEIDSNLDDEFSELMGPTVTKGMLEKN-VEAELCKDDV 119

Query: 134 SEEDLENVEAPQE-LELSDTETEVSKPKSSKERVSSALFNAIVAA 3
             ED   VE P + LELSD+E++  + +S +E+V   L  AI AA
Sbjct: 120 DGED---VEMPHDKLELSDSESDARQGESLREKVPMELLKAITAA 161


>ref|XP_002308888.2| hypothetical protein POPTR_0006s03790g [Populus trichocarpa]
           gi|550335400|gb|EEE92411.2| hypothetical protein
           POPTR_0006s03790g [Populus trichocarpa]
          Length = 623

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
 Frame = -3

Query: 485 MWAIRRASSSYKKQVFMTGASRICYATSEISSQYLKGH--NEGASNVISHRPLIFRGFQL 312
           MWA+RRAS+  K +    G SR C A SEI S Y++G      +   +S  P       +
Sbjct: 1   MWALRRASNPLKFRGLSVGTSRGCCAKSEIVSSYVEGKVVTVKSPQPVSQSPRFHHSTNV 60

Query: 311 KSHRLSMERGCFSSQAGTKXXXXXXXXXXXXXXELESSTATEAIQE--ANKVDASVSEQE 138
            S +  +E+  F+SQAG +                  + A E+     A   D  +SE E
Sbjct: 61  GS-KFYLEKRGFASQAGAENSGSDVDLEDGFSELETPANANESTVNALAGNEDQLISEPE 119

Query: 137 LSEEDLENVEAPQE--LELSDTETEVSKPKSSKERVSSALFNAIVAA 3
           LS++D +++  P +  LELSD ET+       ++R ++ LFNAIV+A
Sbjct: 120 LSDDDNDDIGEPSQNALELSDNETDSVVKSLPRKRPTTELFNAIVSA 166


>emb|CBI30135.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 13/174 (7%)
 Frame = -3

Query: 485 MWAIRRASSSYKKQVFMTGASRICYATSEISSQYLKGHNEGASNVISHRPLIFRGFQLKS 306
           MWA+RR+S+  K Q F  G  + C+A SE+ S Y K         I   P +     L S
Sbjct: 1   MWALRRSSNRLKNQGFSIGTLQACHAKSEMLSTYYKDMTG-----ICKSPQVINDCHLSS 55

Query: 305 HRL----------SMERGCFSSQAGTKXXXXXXXXXXXXXXELESSTA---TEAIQEANK 165
            +           SM    FSSQAG K                 S  A    ++  E+  
Sbjct: 56  RKFYHPTDIYSVFSMGSCSFSSQAGAKSSGEEDDLEDGFSELEASGNAGGFQDSDAESEH 115

Query: 164 VDASVSEQELSEEDLENVEAPQELELSDTETEVSKPKSSKERVSSALFNAIVAA 3
            D  +S+ +  ++++E+ +   ELE  DT+T+VS+ +S ++RVSS LF AI+AA
Sbjct: 116 EDELLSDPKSDDDEIESTQ--NELEPLDTDTDVSEKRSPRKRVSSELFKAIMAA 167


>ref|XP_002322619.2| hypothetical protein POPTR_0016s03540g [Populus trichocarpa]
           gi|550320743|gb|EEF04380.2| hypothetical protein
           POPTR_0016s03540g [Populus trichocarpa]
          Length = 618

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
 Frame = -3

Query: 485 MWAIRRASSSYKKQVFMTGASRICYATSEISSQYLKGHNEGAS--NVISHRPLIFRGFQL 312
           M A+RRA +  K + F  G SR C A SEI   Y++G          +S RP  +    +
Sbjct: 1   MLALRRACNPLKFRGFSVGTSRACCAKSEIVFSYIEGKATVVEPPQPVSERPRFYHSTNI 60

Query: 311 KSHRLSMERGCFSSQAGTKXXXXXXXXXXXXXXELESSTATEAIQEANKVDASVSEQELS 132
            S +  +E+  F+SQAG +                E  T   A +    V   +SE ELS
Sbjct: 61  GS-KFYLEKRGFASQAGAESSESDEDLEDEFS---ELETPISANESVVNVVQLISEPELS 116

Query: 131 EEDLENVEAPQE--LELSDTETEVSKPKSSKERVSSALFNAIVAA 3
           ++D  ++  P +  LELSD ET+ ++ +  +++  S LF AI++A
Sbjct: 117 DDDTNDIGEPSQNALELSDNETDPAEKRLPRKKAPSELFKAIISA 161


>ref|XP_004303594.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 625

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 13/172 (7%)
 Frame = -3

Query: 485 MWAIRRASSSYKKQVFMTGASRICYATSEISSQYLKGHNEGASNVISHRPLIFRGFQLKS 306
           MWA+RR S   +KQ F  G SR C A  E+   Y+    +  S  +    L   GF L S
Sbjct: 1   MWALRRVSLPLRKQGFSVGTSRACCANLELPITYI----QDKSFFLESPQLGSDGF-LPS 55

Query: 305 HRL---------SMERGCFSSQAGTKXXXXXXXXXXXXXXELESSTATEAIQEANKVDAS 153
            RL         S++R   SSQAGT+               LE+    E +Q +N  D +
Sbjct: 56  KRLYTTNVLSKFSVDRCSLSSQAGTESSGEEDDLEDGFSK-LETPPTAEVVQASNANDEN 114

Query: 152 ----VSEQELSEEDLENVEAPQELELSDTETEVSKPKSSKERVSSALFNAIV 9
               VS  E+S+++ +   +  ELELS+ ET+++   S + R  SALF AI+
Sbjct: 115 EDELVSGPEISDDEADIEPSQNELELSEIETDLNDKLSPRRRDVSALFKAIL 166


>gb|EOY08857.1| Pentatricopeptide repeat-containing protein isoform 1 [Theobroma
           cacao]
          Length = 623

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 11/172 (6%)
 Frame = -3

Query: 485 MWAIRRASSSYKKQVFMTGASRICYATSEISSQYLKGHN---EGASNVISHRPLIFRGFQ 315
           MWA+RR ++  K +     AS    A  +ISS Y+ G     E +  +   RP + R + 
Sbjct: 1   MWALRRVANPLKDRRISIQAS----AKLQISSNYIDGKAVIFESSQTISDKRPSLLRFYH 56

Query: 314 LK--SHRLSMERGCFSSQAGTKXXXXXXXXXXXXXXELESSTATEAIQEANKVDAS---- 153
            +  S   S+ R   SSQAG +               LE+    E  +  +  D +    
Sbjct: 57  SRHASCNFSVGRCGLSSQAGAESSGEEDELEDGFSE-LETPATAEKKENCSAQDKAEDGL 115

Query: 152 VSEQELS--EEDLENVEAPQELELSDTETEVSKPKSSKERVSSALFNAIVAA 3
           +S+ ELS  EED+E   A  ELELS+ ET++S  KSS  R+ S LF A++AA
Sbjct: 116 ISDPELSGDEEDIEET-AKNELELSEDETDLSDKKSSTRRIVSELFKAVIAA 166


>ref|XP_006482077.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80270,
           mitochondrial-like [Citrus sinensis]
          Length = 623

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 11/172 (6%)
 Frame = -3

Query: 485 MWAIRRASSSYKKQVFMTGASRICYATSEISSQYLKGHNE--GASNVISHRPLIFRGFQL 312
           MWA+RRAS+  K Q F  G +R C +  E+    +        +   +S   L    F  
Sbjct: 1   MWALRRASNPLKSQGFGLGTARACCSRLEVLCGCVDDEAVILASPRAVSDGRLPLLRFYH 60

Query: 311 KSHRLSM---ERGCFSSQAGTKXXXXXXXXXXXXXXELESSTATEAIQEA----NKVDAS 153
           + H  S+    R   SSQAG +              ELE+   T+A+Q++     K D  
Sbjct: 61  QPHDCSIFFGGRRGLSSQAGAE-SSGEEDDWEEGFSELETPATTDAVQKSIADDEKEDGL 119

Query: 152 VSEQELS--EEDLENVEAPQELELSDTETEVSKPKSSKERVSSALFNAIVAA 3
           +SE ELS   +D+EN     +LELS+TETE S+  +  +R  S LF AI+ A
Sbjct: 120 ISESELSGDHDDIEN-----DLELSETETEPSRKTTPSKRKLSKLFKAIMDA 166


>gb|EOY08858.1| Pentatricopeptide repeat-containing protein isoform 2, partial
           [Theobroma cacao]
          Length = 621

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 11/170 (6%)
 Frame = -3

Query: 479 AIRRASSSYKKQVFMTGASRICYATSEISSQYLKGHN---EGASNVISHRPLIFRGFQLK 309
           A+RR ++  K +     AS    A  +ISS Y+ G     E +  +   RP + R +  +
Sbjct: 1   ALRRVANPLKDRRISIQAS----AKLQISSNYIDGKAVIFESSQTISDKRPSLLRFYHSR 56

Query: 308 --SHRLSMERGCFSSQAGTKXXXXXXXXXXXXXXELESSTATEAIQEANKVDAS----VS 147
             S   S+ R   SSQAG +               LE+    E  +  +  D +    +S
Sbjct: 57  HASCNFSVGRCGLSSQAGAESSGEEDELEDGFSE-LETPATAEKKENCSAQDKAEDGLIS 115

Query: 146 EQELS--EEDLENVEAPQELELSDTETEVSKPKSSKERVSSALFNAIVAA 3
           + ELS  EED+E   A  ELELS+ ET++S  KSS  R+ S LF A++AA
Sbjct: 116 DPELSGDEEDIEET-AKNELELSEDETDLSDKKSSTRRIVSELFKAVIAA 164


>ref|XP_002535692.1| conserved hypothetical protein [Ricinus communis]
           gi|223522266|gb|EEF26691.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 194

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
 Frame = -3

Query: 446 QVFMTGASRICYATSEISSQYLKGHNEGAS--NVISHRPLIFRGFQLKSHRLSMERGCFS 273
           Q    G SRIC A SE+ S +L+G+   +    + S + L +    + S +  ++R   S
Sbjct: 2   QGLRVGTSRICCAKSEMFSSHLEGNGAVSKPLQIASEKCLFYHSTNVCS-KFHIDRRSLS 60

Query: 272 SQAGTKXXXXXXXXXXXXXXELESSTATEAIQEANKV----DASVSEQELSEEDLENVEA 105
           S+AG++               LE+      I E+N V    D   SE EL ++D ++  A
Sbjct: 61  SKAGSESSKSEDDLEDGFSE-LETPANANTIDESNAVGGNEDELFSEPELDDDDGDS-GA 118

Query: 104 PQELELSDTETEVSKPKSSKERVSSALFNAIVAA 3
              LELSDTE    K  + ++RV S LF  I+AA
Sbjct: 119 KNALELSDTEAGSGKKTTVRKRVPSELFKTIIAA 152