BLASTX nr result
ID: Atropa21_contig00023840
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00023840
(623 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 173 3e-41
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 148 1e-33
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 148 1e-33
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera] 148 1e-33
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 142 1e-31
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 141 1e-31
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 141 1e-31
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe... 140 4e-31
ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|3555218... 139 5e-31
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag... 139 5e-31
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 139 6e-31
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative... 138 1e-30
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus... 137 2e-30
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 135 7e-30
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 135 1e-29
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 134 3e-29
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 132 1e-28
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 130 3e-28
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 130 4e-28
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 129 7e-28
>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1 [Solanum lycopersicum]
Length = 1632
Score = 173 bits (439), Expect = 3e-41
Identities = 81/97 (83%), Positives = 90/97 (92%), Gaps = 1/97 (1%)
Frame = +3
Query: 12 DPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKEDFS 191
DPLSADDQSY+IDTVLNYHPDKAVKMGAGLDYI VSKHT FQD+RCFYVVSTDGAK+DFS
Sbjct: 1523 DPLSADDQSYIIDTVLNYHPDKAVKMGAGLDYITVSKHTNFQDTRCFYVVSTDGAKQDFS 1582
Query: 192 TLKCMESYVRSKYPDKAETFNGKYFKK-SQPRIPRVA 299
T KC+E++VRSKYPDKAETFN KYFKK PR+P++A
Sbjct: 1583 TRKCLENFVRSKYPDKAETFNEKYFKKPPPPRVPKIA 1619
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 148 bits (373), Expect = 1e-33
Identities = 64/90 (71%), Positives = 78/90 (86%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPLSADDQSY++D V N HPDKAVKMG G+DY+MVS+H+ F +SRCFYVVSTDG KE
Sbjct: 1767 NDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKE 1826
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKK 272
DFS KC+E++++ KYPD AETF GKYF++
Sbjct: 1827 DFSYRKCLENFIKEKYPDNAETFIGKYFRR 1856
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 148 bits (373), Expect = 1e-33
Identities = 64/90 (71%), Positives = 78/90 (86%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPLSADDQSY++D V N HPDKAVKMG G+DY+MVS+H+ F +SRCFYVVSTDG KE
Sbjct: 1707 NDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKE 1766
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKK 272
DFS KC+E++++ KYPD AETF GKYF++
Sbjct: 1767 DFSYRKCLENFIKEKYPDNAETFIGKYFRR 1796
>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
Length = 1081
Score = 148 bits (373), Expect = 1e-33
Identities = 64/90 (71%), Positives = 78/90 (86%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPLSADDQSY++D V N HPDKAVKMG G+DY+MVS+H+ F +SRCFYVVSTDG KE
Sbjct: 958 NDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKE 1017
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKK 272
DFS KC+E++++ KYPD AETF GKYF++
Sbjct: 1018 DFSYRKCLENFIKEKYPDNAETFIGKYFRR 1047
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 142 bits (357), Expect = 1e-31
Identities = 60/90 (66%), Positives = 77/90 (85%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPLSADDQSYV+D V +YHPDKAVKMGAG+D++ VS+H+ FQ+SRCFY+VSTDG K+
Sbjct: 1811 NDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCKQ 1870
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKK 272
DFS KC+E++++ KYPD A+ F KYF +
Sbjct: 1871 DFSYRKCLENFIKGKYPDLADEFIAKYFAR 1900
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 141 bits (356), Expect = 1e-31
Identities = 60/93 (64%), Positives = 79/93 (84%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPLSA+DQS+V+ +V N+HPDKA KMGAG+D+ MVS+H+ FQ+SRCFYVV+TDG KE
Sbjct: 1832 NDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKE 1891
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQP 281
DFS KC++++++ KYPD AE F KYF+K +P
Sbjct: 1892 DFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRP 1924
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 141 bits (356), Expect = 1e-31
Identities = 60/93 (64%), Positives = 79/93 (84%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPLSA+DQS+V+ +V N+HPDKA KMGAG+D+ MVS+H+ FQ+SRCFYVV+TDG KE
Sbjct: 1892 NDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKE 1951
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQP 281
DFS KC++++++ KYPD AE F KYF+K +P
Sbjct: 1952 DFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRP 1984
>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 140 bits (352), Expect = 4e-31
Identities = 60/90 (66%), Positives = 74/90 (82%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPLS DDQS+V+D V NYHPDKA KMG G+D++ V++H FQDSRCF+VVSTDG E
Sbjct: 1735 NDGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVSTDGRTE 1794
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKK 272
DFS KC+++Y+R K+PD AETF GKYF +
Sbjct: 1795 DFSYRKCLDNYIREKFPDLAETFIGKYFSR 1824
>ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|355521872|gb|AET02326.1|
Protein DCL [Medicago truncatula]
Length = 481
Score = 139 bits (351), Expect = 5e-31
Identities = 61/97 (62%), Positives = 76/97 (78%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPL+ +DQ YV++ V +HPDK KMG G+D++MVSKH+ FQDSRC YVV DG KE
Sbjct: 317 NDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKE 376
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQPRIPR 293
DFS KC+E+ VR KYP+ AE+F GKYF+K QPR+ R
Sbjct: 377 DFSYRKCLENLVRKKYPETAESFCGKYFRKPQPRVKR 413
>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
subunit [Medicago truncatula]
Length = 2032
Score = 139 bits (351), Expect = 5e-31
Identities = 61/97 (62%), Positives = 76/97 (78%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPL+ +DQ YV++ V +HPDK KMG G+D++MVSKH+ FQDSRC YVV DG KE
Sbjct: 1868 NDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKE 1927
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQPRIPR 293
DFS KC+E+ VR KYP+ AE+F GKYF+K QPR+ R
Sbjct: 1928 DFSYRKCLENLVRKKYPETAESFCGKYFRKPQPRVKR 1964
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 139 bits (350), Expect = 6e-31
Identities = 60/99 (60%), Positives = 79/99 (79%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPL+A+DQ YV++ V +HPDK KMG G+D++MVS+H+ FQ+SRCFYVV DG KE
Sbjct: 2103 NDGDPLAAEDQQYVLENVFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYVVLKDGKKE 2162
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQPRIPRVA 299
DFS KC+ES+VR KY D AE+F GKYF+K +P+ ++A
Sbjct: 2163 DFSYRKCLESFVRKKYADTAESFCGKYFRKPRPKRDQIA 2201
>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 138 bits (347), Expect = 1e-30
Identities = 58/90 (64%), Positives = 76/90 (84%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPLSA DQS++++ V +HPDKA+KMGAG+DY+MVSKH+ F DSRCFYVVSTDG K+
Sbjct: 1677 NDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHSNFPDSRCFYVVSTDGRKQ 1736
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKK 272
DFS KC++++++ KYPD A+ F KYF+K
Sbjct: 1737 DFSYRKCLDNFIKGKYPDMADVFIAKYFRK 1766
>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 137 bits (345), Expect = 2e-30
Identities = 59/99 (59%), Positives = 79/99 (79%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPL+ADDQ +V++ V +HPDK KMGAG+DY+MV+KH+ FQDSRCFYVV DG +E
Sbjct: 1922 NDGDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYVVLKDGRRE 1981
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQPRIPRVA 299
DFS KC+++++R KYP+ AE+F GKYF+K + R + A
Sbjct: 1982 DFSYRKCLDNWIRKKYPELAESFFGKYFRKPRNRAEQTA 2020
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 135 bits (341), Expect = 7e-30
Identities = 58/91 (63%), Positives = 75/91 (82%)
Frame = +3
Query: 6 DGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKED 185
DG+PL DDQ+Y+ID +LNYHPDKA K+GAG+D+I V KH+ FQ+SRCFYVVSTDG D
Sbjct: 1779 DGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFITVKKHSNFQESRCFYVVSTDGKDTD 1838
Query: 186 FSTLKCMESYVRSKYPDKAETFNGKYFKKSQ 278
FS +KC+E++V+ KYP AE+F KYF++SQ
Sbjct: 1839 FSYIKCIETFVKGKYPSVAESFTSKYFRRSQ 1869
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 135 bits (339), Expect = 1e-29
Identities = 56/93 (60%), Positives = 76/93 (81%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDP+ +DQS++ID V NYHPDKA KMG+G+D++M+S+H+ FQDSRC YVVSTDG KE
Sbjct: 1921 NDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQDSRCLYVVSTDGRKE 1980
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQP 281
DFS KC+ + ++S++PD A+ F KYF+K +P
Sbjct: 1981 DFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKP 2013
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 134 bits (336), Expect = 3e-29
Identities = 60/104 (57%), Positives = 78/104 (75%), Gaps = 6/104 (5%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGD LSADD+S++ D V NYHPDKA+KMGAG+D+ V KH FQDSRC +VVSTDG+++
Sbjct: 1753 NDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQ 1812
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKK------SQPRIPRV 296
DFS KC+ES++R KYPD + F GKYF++ +P +P V
Sbjct: 1813 DFSYRKCLESFIRGKYPDLVDEFIGKYFRRPRSGGNREPSLPPV 1856
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 132 bits (331), Expect = 1e-28
Identities = 59/104 (56%), Positives = 78/104 (75%), Gaps = 6/104 (5%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGD LSADD+S++ D V NYHPDKA+KMGAG+D+ V KH FQDSRC +VVSTDG+++
Sbjct: 1755 NDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQ 1814
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKK------SQPRIPRV 296
DFS KC+ES++R KYP+ + F GKYF++ +P +P V
Sbjct: 1815 DFSYRKCLESFIRGKYPEFVDEFIGKYFRRPRSGGNREPSLPPV 1858
>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2082
Score = 130 bits (327), Expect = 3e-28
Identities = 55/94 (58%), Positives = 73/94 (77%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGDPL+A+DQ +V++ V +HPDK KMG G+DY+MV+KH+ FQ+SRCFYVV DG +
Sbjct: 1945 NDGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMVNKHSSFQESRCFYVVCKDGESK 2004
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQPR 284
DFS KC+ +Y+ KYPD AE+F GKYF+K + R
Sbjct: 2005 DFSYRKCLANYISKKYPDLAESFLGKYFRKPRAR 2038
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 130 bits (326), Expect = 4e-28
Identities = 55/94 (58%), Positives = 74/94 (78%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
+DGDPL+A+DQ +V++ V +HPDK KMGAG+DY+MV+KH+ FQ+SRCFYVV DG +
Sbjct: 1902 SDGDPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSSFQESRCFYVVCKDGQSK 1961
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQPR 284
DFS KC+ +Y+ KYPD AE+F GKYF+K + R
Sbjct: 1962 DFSYRKCLANYISKKYPDLAESFLGKYFRKPRAR 1995
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 129 bits (324), Expect = 7e-28
Identities = 53/96 (55%), Positives = 73/96 (76%)
Frame = +3
Query: 3 NDGDPLSADDQSYVIDTVLNYHPDKAVKMGAGLDYIMVSKHTKFQDSRCFYVVSTDGAKE 182
NDGD LSA+D S+++D V N+HP+K KMG+G+DY V +H FQ+SRC +V+STDG KE
Sbjct: 1881 NDGDQLSAEDHSFILDKVFNFHPEKEAKMGSGIDYFTVDRHGSFQESRCLFVISTDGRKE 1940
Query: 183 DFSTLKCMESYVRSKYPDKAETFNGKYFKKSQPRIP 290
DFS KC+++ ++ KYP+ AE FN KYF + +PR P
Sbjct: 1941 DFSYRKCLQNMIKEKYPELAEAFNDKYFSRPRPRNP 1976