BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00022407
         (1632 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006341306.1| PREDICTED: uncharacterized protein LOC102594...   263   1e-67
gb|AAQ72729.1| putative gag-pol polyprotein [Petunia x hybrida]       202   4e-49
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   199   4e-48
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   199   4e-48
ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624...   197   1e-47
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             191   6e-46
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...   183   2e-43
gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]             174   1e-40
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   173   2e-40
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   172   3e-40
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   169   2e-39
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   169   3e-39
emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera]   169   4e-39
ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763...   168   5e-39
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        167   9e-39
emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group] gi...   166   2e-38
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       166   3e-38
ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759...   166   4e-38
ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772...   165   5e-38
ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752...   164   1e-37

>ref|XP_006341306.1| PREDICTED: uncharacterized protein LOC102594621 [Solanum tuberosum]
          Length = 631

 Score =  263 bits (673), Expect = 1e-67
 Identities = 131/210 (62%), Positives = 158/210 (75%), Gaps = 1/210 (0%)
 Frame = -2

Query: 1619 VNFALVVRRVMCALAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKF 1440
            VN + VVRR+M ALA+E LDQR NLFHAR KIQDKVCSLIID GSCTN VS SLVE MK 
Sbjct: 422  VNLSYVVRRIMGALAKEELDQRENLFHARFKIQDKVCSLIIDSGSCTNVVSSSLVERMKV 481

Query: 1439 STQKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFD 1260
             T KH + YK Q  N+ G++KV KQ+ I+FS+GKY +E++CDVVPM A H+LLGRPWQF 
Sbjct: 482  QTSKHPNTYKIQLLNESGEMKVLKQASIQFSVGKYNEELVCDVVPMLAYHLLLGRPWQFG 541

Query: 1259 RDAQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEME-KHEKDTLV 1083
            RD  H GR+N Y F++ G+KY LA L PYQVSEDYR MKEL +RV+ EE + + E  T+V
Sbjct: 542  RDIMHQGRSNKYTFVIEGKKYVLAPLTPYQVSEDYRAMKELRERVKTEEAKGEGESSTIV 601

Query: 1082 VQEGQGSTQEKTKMCMIVKPSTCLEGVDEK 993
             +EG    + K  MCMI KPS CL+GVDE+
Sbjct: 602  PKEGSALAKNKKNMCMIEKPSKCLKGVDEE 631


>gb|AAQ72729.1| putative gag-pol polyprotein [Petunia x hybrida]
          Length = 803

 Score =  202 bits (513), Expect = 4e-49
 Identities = 113/266 (42%), Positives = 162/266 (60%), Gaps = 6/266 (2%)
 Frame = -2

Query: 1607 LVVRRVMCALAREALD--QRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            LVVRR + A+  E  +  QR NLFHAR +++  VCS+IID GSCTN VS+SL+  +K  T
Sbjct: 445  LVVRRSLGAMIAEDGETLQRENLFHARCRVKGVVCSMIIDSGSCTNVVSQSLITQLKLPT 504

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
             KH  PY+ QW ++ G++KV KQ++IKF +G Y DE L DVVPMQACH+L GRPWQFDR 
Sbjct: 505  MKHPKPYRLQWLSECGELKVVKQAMIKFKMGSYVDEHLFDVVPMQACHLLFGRPWQFDRQ 564

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHE--KDTLVV 1080
              H+GR N Y     GRK+ L  L P QVS+DY  MKEL +  + + + +      ++V 
Sbjct: 565  VVHNGRVNNYTLQHEGRKFVLKPLTPKQVSDDYNRMKELREAAKAKSIIETSPLSKSMVA 624

Query: 1079 QEGQGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTN--QATSILPSSVTSL 906
                 ST     +C +++    L G D     LCLV    +L++N   ++S LPS++ ++
Sbjct: 625  IPPSSST---GGICAMMQAGELLRGNDGNKFLLCLVHKGMILNSNCDVSSSPLPSALKNV 681

Query: 905  LQCYDDLAPKKMPKKISHPQGLHISI 828
            L+ + D+ P +MP  +   +G+   I
Sbjct: 682  LENFGDMFPDEMPDGLPPLRGIEHQI 707


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  199 bits (505), Expect = 4e-48
 Identities = 120/292 (41%), Positives = 162/292 (55%), Gaps = 33/292 (11%)
 Frame = -2

Query: 1604 VVRRVMCA-LAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFSTQK 1428
            VVRR+M   L      QR NLFH R  I+ K  S+IIDGGSC N VS  LV+ +  +  K
Sbjct: 402  VVRRIMTINLGSVDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMK 461

Query: 1427 HHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRDAQ 1248
              +PY+ QW ND G+V+V KQ +I F++G+YEDE+LCDVVPMQACH+LLGRPWQ+DRD  
Sbjct: 462  RSTPYRLQWLNDCGEVQVNKQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRDTT 521

Query: 1247 HSGRTNTY*FILGGRKYTLALLMPYQVSEDYR------------VMKEL*KRVQREEMEK 1104
            H GR N Y  +  G+KYTLA L P QV ED +            V  EL  + + +E+EK
Sbjct: 522  HHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKRLRETMGKQKGEVKSELEGKEKGQEIEK 581

Query: 1103 ----HEKD------TLVVQEG----------QGSTQEKTKMCMIVKPSTCLEGVDEKNLR 984
                 EK+      +  V+EG          +   +EK    + +K   CL    E    
Sbjct: 582  KKDGREKEREGSDLSKEVKEGVSKKIKCFGERKEAKEKKNESLYIKAKECLNARREGLPI 641

Query: 983  LCLVLNYPLLHTNQATSILPSSVTSLLQCYDDLAPKKMPKKISHPQGLHISI 828
            + L     L++  Q T  LP+SV+SLLQ ++D+ P   PK +   +G+   I
Sbjct: 642  ILLTYKEILINFEQLTPSLPNSVSSLLQNFEDVFPDDTPKGLPPLRGIEHQI 693


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  199 bits (505), Expect = 4e-48
 Identities = 120/292 (41%), Positives = 162/292 (55%), Gaps = 33/292 (11%)
 Frame = -2

Query: 1604 VVRRVMCA-LAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFSTQK 1428
            VVRR+M   L      QR NLFH R  I+ K  S+IIDGGSC N VS  LV+ +  +  K
Sbjct: 402  VVRRIMTINLGSVDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMK 461

Query: 1427 HHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRDAQ 1248
              +PY+ QW ND G+V+V KQ +I F++G+YEDE+LCDVVPMQACH+LLGRPWQ+DRD  
Sbjct: 462  RSTPYRLQWLNDCGEVQVNKQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRDTT 521

Query: 1247 HSGRTNTY*FILGGRKYTLALLMPYQVSEDYR------------VMKEL*KRVQREEMEK 1104
            H GR N Y  +  G+KYTLA L P QV ED +            V  EL  + + +E+EK
Sbjct: 522  HHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKRLRETMGKQKGEVKSELEGKEKGQEIEK 581

Query: 1103 ----HEKD------TLVVQEG----------QGSTQEKTKMCMIVKPSTCLEGVDEKNLR 984
                 EK+      +  V+EG          +   +EK    + +K   CL    E    
Sbjct: 582  KKDGREKEREGSDLSKEVKEGVSKKIKCFGERKEAKEKKNESLYIKAKECLNARREGLPI 641

Query: 983  LCLVLNYPLLHTNQATSILPSSVTSLLQCYDDLAPKKMPKKISHPQGLHISI 828
            + L     L++  Q T  LP+SV+SLLQ ++D+ P   PK +   +G+   I
Sbjct: 642  ILLTYKEILINFEQLTPSLPNSVSSLLQNFEDVFPDDTPKGLPPLRGIEHQI 693


>ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
          Length = 1083

 Score =  197 bits (501), Expect = 1e-47
 Identities = 109/261 (41%), Positives = 148/261 (56%), Gaps = 1/261 (0%)
 Frame = -2

Query: 1607 LVVRRVMCALAREALD-QRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFSTQ 1431
            +V RR +    +E  + QR N+FH R  I+DKVCS+IIDGGSCTN    SLVE +   T 
Sbjct: 211  MVARRALNTQVKEDAEVQRDNIFHTRCHIKDKVCSMIIDGGSCTNVAITSLVEKLNLKTL 270

Query: 1430 KHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRDA 1251
            KH   YK QW NDYG+VKV KQ ++ FSIG+Y+D++LCDVVPM A HILLGRPWQ+DR  
Sbjct: 271  KHSRLYKLQWLNDYGEVKVNKQVLVSFSIGRYKDDVLCDVVPMHAGHILLGRPWQYDRRV 330

Query: 1250 QHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHEKDTLVVQEG 1071
             H G  N Y F++  RK TL  L P QV ED         ++   E ++ ++  L  +E 
Sbjct: 331  THDGYLNRYSFVINKRKITLVPLTPRQVYED---------QINIVERKERQQVNLFAKES 381

Query: 1070 QGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTNQATSILPSSVTSLLQCYD 891
            +      +K  ++V                 L+     LHTN+    LPS++ +LLQ YD
Sbjct: 382  EVKRAFFSKQPIVV-----------------LLCKEACLHTNELNFSLPSAIVTLLQDYD 424

Query: 890  DLAPKKMPKKISHPQGLHISI 828
            D+ P K+P  +   +G+   I
Sbjct: 425  DVFPNKVPNGLPPIRGIEHQI 445


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  191 bits (486), Expect = 6e-46
 Identities = 112/264 (42%), Positives = 154/264 (58%), Gaps = 4/264 (1%)
 Frame = -2

Query: 1607 LVVRRVMCA-LAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFSTQ 1431
            L+VRR++ + +  E   QR NLFH R  +Q KVCSLIIDGGSCTN  S  LV  +K  T+
Sbjct: 344  LMVRRMLGSQIKEEDTSQRENLFHIRCFVQGKVCSLIIDGGSCTNVASTRLVSRLKLETK 403

Query: 1430 KHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRDA 1251
             H  PYK QW N+  ++ V KQ  I F IGKYED +LCDVVPM+A H+LLGRPWQFDR A
Sbjct: 404  PHPKPYKLQWLNESVEMLVNKQVEICFKIGKYEDVVLCDVVPMEASHLLLGRPWQFDRKA 463

Query: 1250 QHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHEKDTLVVQEG 1071
             H G +N Y F+   +K  L  L P +V ED R M E   + ++E+ ++ EK+     E 
Sbjct: 464  NHDGYSNKYSFMYHDQKINLVPLNPSEVREDQRKMSEKYDQERKEKEKEKEKN-----EK 518

Query: 1070 QGSTQEKTKMCMIVKPSTCLEG-VDEKNLRLCLVLNYPLLHTNQATSILPSSVTSLLQCY 894
            + + + + K  +I K     E  V  + L L      PLL T      LP+ + SLLQ +
Sbjct: 519  KKNDKREKKQSLIAKIRDVKEAIVSHQPLYLLFCKEVPLLTTISNEKKLPNCIESLLQEF 578

Query: 893  DDLAPKKMPKKISHPQGL--HISI 828
             +L P+++P  +   +G+  HI +
Sbjct: 579  KELFPEEVPSGLPPIRGIEHHIDL 602


>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score =  183 bits (464), Expect = 2e-43
 Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 14/283 (4%)
 Frame = -2

Query: 1628 EEGVNFALVVRRVMCALA-REALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVE 1452
            ++ ++F  VV + +  L   +  +QR N+F+ + KI    CS IIDGGSCTN +S+ +V 
Sbjct: 376  DDALHFNCVVHKALSTLVVLDQEEQRENIFYGKCKIPGATCSFIIDGGSCTNVISEDVVN 435

Query: 1451 HMKFSTQKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRP 1272
             MK  T +H  PYK QW ND G++KV KQ++I  SIGKY+D++LCDV+PM ACHILLGRP
Sbjct: 436  AMKIPTIQHPQPYKLQWLNDDGELKVHKQALISISIGKYQDDVLCDVIPMHACHILLGRP 495

Query: 1271 WQFDRDAQHSGRTNTY*FILGGRKYTLALLMP---YQVSEDYRVMKEL*KRVQREEMEK- 1104
            WQ+DRD  H G+TN Y    GG+KYTL  L P   Y +    + ++E   +  +E M++ 
Sbjct: 496  WQYDRDTLHHGKTNKYTIHKGGKKYTLTPLAPKEVYNLQVQSKKLREELAQKAKEAMKET 555

Query: 1103 ---------HEKDTLVVQEGQGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLH 951
                     HEK        + +TQ    + M  +    +E    +   + L+       
Sbjct: 556  TSGKQNTIAHEKKQRKEGMKKDTTQSSHNLLMTKRE---VEQALRRGEGVFLLYPIDFCL 612

Query: 950  TNQATSILPSSVTSLLQCYDDLAPKKMPKKISHPQGLHISIPI 822
                + I+PS V++LL  + D+ P+++PK +   +G+   I +
Sbjct: 613  NVIKSEIIPSDVSALLSEFADVFPEELPKGLPPIRGIEHQIDL 655


>gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 572

 Score =  174 bits (441), Expect = 1e-40
 Identities = 94/204 (46%), Positives = 123/204 (60%), Gaps = 6/204 (2%)
 Frame = -2

Query: 1607 LVVRRVMCA-LAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFSTQ 1431
            L+VRR++ + +  E   QR NLFH R  +Q KVCSLIIDGGSCTN  S  LV  +K  T+
Sbjct: 344  LMVRRMLGSQIKEEDTGQRENLFHTRCFVQGKVCSLIIDGGSCTNVASTRLVSKLKLETK 403

Query: 1430 KHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRDA 1251
             H  PYK QW N+  ++ V KQ  I F IGKYED +LCDVVPM+A H+LLGRPWQFDR A
Sbjct: 404  PHPKPYKLQWLNESVEMLVNKQVEICFKIGKYEDVVLCDVVPMEASHLLLGRPWQFDRKA 463

Query: 1250 QHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQRE-----EMEKHEKDTL 1086
             H G +N Y F+   +K  L  L P +V ED R M+E   + ++E     E EK ++   
Sbjct: 464  NHDGYSNKYSFMYHDQKINLVPLNPSEVREDQRKMREKYDQERKEKEKEKEKEKEKEKVK 523

Query: 1085 VVQEGQGSTQEKTKMCMIVKPSTC 1014
               E + + + + K  +I K   C
Sbjct: 524  EKNEKKKNDKREKKQSLIAKKKRC 547


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  173 bits (438), Expect = 2e-40
 Identities = 97/265 (36%), Positives = 142/265 (53%), Gaps = 2/265 (0%)
 Frame = -2

Query: 1610 ALVVRRVMCALAREA-LDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            +L+V+RV+ A   +A  +QR  LF  +  ++++ C +IIDGGSC N  S  +VE +  ST
Sbjct: 457  SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALST 516

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
            + H  PY  QW N+ GK KVTK   I F+IG Y D + CDVVPMQAC+ILLGRPWQFDRD
Sbjct: 517  KPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRD 576

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHEKDTLVVQE 1074
            + H GR+N Y F+   +K  L  + P  +  D          V +    K E D     +
Sbjct: 577  SMHHGRSNQYSFLYHDKKIVLHSMSPEDILRD---------DVAKAAKSKCESDKKAQSD 627

Query: 1073 G-QGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTNQATSILPSSVTSLLQC 897
            G +  T      C++   S   E +   ++   LV    L+  +     LP +V ++LQ 
Sbjct: 628  GKKPETINLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQE 687

Query: 896  YDDLAPKKMPKKISHPQGLHISIPI 822
            Y D+ PK++P  +   +G+   I +
Sbjct: 688  YSDVFPKEVPPGLPPVRGIEHQIDL 712


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  172 bits (437), Expect = 3e-40
 Identities = 104/274 (37%), Positives = 145/274 (52%), Gaps = 11/274 (4%)
 Frame = -2

Query: 1610 ALVVRRVMCA-LAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            +LVV+RV+ A + R   +QR  LF  +  I+++ C +IIDGGSC N  S  +VE +  ST
Sbjct: 468  SLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALST 527

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
            Q H  PY  QW N  GKVKVT+   + F+IG Y D + CDVVPMQAC +LLGRPWQFD+D
Sbjct: 528  QPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKD 587

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KR---------VQREEMEKH 1101
            + H G++N Y F+  G+K  L  + P  + +D        K          +   E+EKH
Sbjct: 588  SLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANELEKH 647

Query: 1100 -EKDTLVVQEGQGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTNQATSILP 924
             +K T  VQ  +   + K   C I   S   E   +  +   LV    L         LP
Sbjct: 648  KKKPTNSVQNNKNEIKLKGS-CFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLP 706

Query: 923  SSVTSLLQCYDDLAPKKMPKKISHPQGLHISIPI 822
              VT+LLQ Y D+ PK++P  +   +G+   I +
Sbjct: 707  PPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDL 740


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  169 bits (429), Expect = 2e-39
 Identities = 96/265 (36%), Positives = 141/265 (53%), Gaps = 2/265 (0%)
 Frame = -2

Query: 1610 ALVVRRVMCALAREA-LDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            +L+V+RV+ A   +A  +QR  LF  +  ++++ C +IIDGGSC N  S  +VE +  ST
Sbjct: 436  SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALST 495

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
            + H   Y  QW N+ GK KVTK   I F+IG Y D + CDVVPMQAC+ILLGRPWQFDRD
Sbjct: 496  KPHPHSYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRD 555

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHEKDTLVVQE 1074
            + H GR+N Y F+   +K  L  + P  +  D          V +    K E D     +
Sbjct: 556  SMHHGRSNQYSFLYHDKKIVLHPMSPEDILRD---------DVAKAAKSKCESDKKAQSD 606

Query: 1073 G-QGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTNQATSILPSSVTSLLQC 897
            G +  T      C++   S   E +   ++   LV    L+  +     LP +V ++LQ 
Sbjct: 607  GKKPETINLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQE 666

Query: 896  YDDLAPKKMPKKISHPQGLHISIPI 822
            Y D+ PK++P  +   +G+   I +
Sbjct: 667  YSDVFPKEVPPGLPPVRGIEHQIDL 691


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  169 bits (428), Expect = 3e-39
 Identities = 103/274 (37%), Positives = 143/274 (52%), Gaps = 11/274 (4%)
 Frame = -2

Query: 1610 ALVVRRVMCA-LAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            +LVV+RV+ A + R   +QR  LF  +  I+++ C +IID GSC N  S  +VE +  ST
Sbjct: 468  SLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDRGSCNNLASAEMVEKLALST 527

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
            Q H  PY  QW N  GKVKVT+   + F+IG Y D + CDVVPMQAC I LGRPWQFD+D
Sbjct: 528  QPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSIFLGRPWQFDKD 587

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KR---------VQREEMEKH 1101
            + H G++N Y F+  G+K  L  + P  + +D        K          +   E+EKH
Sbjct: 588  SLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANELEKH 647

Query: 1100 -EKDTLVVQEGQGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTNQATSILP 924
             +K T  VQ  +   + K   C I   S   E   +  +   LV    L         LP
Sbjct: 648  KKKPTNSVQNNKNEIKLKGS-CFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLP 706

Query: 923  SSVTSLLQCYDDLAPKKMPKKISHPQGLHISIPI 822
              VT+LLQ Y D+ PK++P  +   +G+   I +
Sbjct: 707  PPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDL 740


>emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera]
          Length = 818

 Score =  169 bits (427), Expect = 4e-39
 Identities = 85/169 (50%), Positives = 108/169 (63%), Gaps = 5/169 (2%)
 Frame = -2

Query: 1586 CALAREAL-----DQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFSTQKHH 1422
            CAL+ +A       QR N+FH R  I +KVCS+IIDGGSCTN  S +LVE++   T KH 
Sbjct: 397  CALSAQAKKDDLEQQRENIFHTRCHINNKVCSMIIDGGSCTNVASTTLVENLNLPTLKHP 456

Query: 1421 SPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRDAQHS 1242
             PYK QW ND+G+ KV K+ ++ FSIG+Y+DE+LCD+VPM A HILLGRPWQFDR   H 
Sbjct: 457  RPYKLQWLNDFGEDKVNKEVLVSFSIGRYKDEVLCDIVPMHAGHILLGRPWQFDRKVNHD 516

Query: 1241 GRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHEK 1095
            G  N Y FI   +  TL  L P Q  E     KE  K+++  + E+  K
Sbjct: 517  GFKNRYSFIKNNKTITLVPLTPRQKKESEN-XKESEKKIESGKNERKTK 564


>ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763064 [Setaria italica]
          Length = 1131

 Score =  168 bits (426), Expect = 5e-39
 Identities = 104/277 (37%), Positives = 149/277 (53%), Gaps = 14/277 (5%)
 Frame = -2

Query: 1610 ALVVRRVMCALAREA-LDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            +LVV+RV+ A   +A  +QR  LF  +  I+++ C +IIDGGSC N  S  +VE +   T
Sbjct: 467  SLVVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALCT 526

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
            Q H  PY  QW N  GKVKVT+   + F+IG Y D + CDVVPMQAC +LLGRPWQFD D
Sbjct: 527  QPHPQPYYIQWLNSSGKVKVTRLVRVNFAIGSYHDSIDCDVVPMQACSMLLGRPWQFDID 586

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHEKDTLVVQE 1074
            + H G+TN Y F+   +K  L  + P  + +D         +V  +E  K E + +V  E
Sbjct: 587  SLHHGKTNQYSFMHNDKKLVLHPMSPEAILKDELARA---SKVMNQEHAKSE-NQIVAHE 642

Query: 1073 GQGSTQEKTKMCMIVKPSTCLEG---------VDE--KNLRLC--LVLNYPLLHTNQATS 933
             +  T++ TK     K    L+G         +DE   N  +C  L+    L    +  S
Sbjct: 643  LKKHTKKNTKSAHNNKNEIKLKGSCFIATKSDLDEIDANTAVCYALICKQTLFSLQEIPS 702

Query: 932  ILPSSVTSLLQCYDDLAPKKMPKKISHPQGLHISIPI 822
             LP +VT+LLQ Y D+ P ++P  +   +G+   I +
Sbjct: 703  SLPPAVTNLLQEYADIFPNEVPPGLPPTRGIEHQIDL 739


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  167 bits (424), Expect = 9e-39
 Identities = 96/265 (36%), Positives = 141/265 (53%), Gaps = 2/265 (0%)
 Frame = -2

Query: 1610 ALVVRRVMCALAREA-LDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            +L+V+RV+ A   +A  +QR  LF  +  ++++ C +IIDGGSC N  S  +VE +  ST
Sbjct: 551  SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALST 610

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
            + H  PY  QW N+ GK KVTK   I F+IG Y D + CDVVPMQAC+ILLGRPWQFDRD
Sbjct: 611  KPHPHPYCIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRD 670

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHEKDTLVVQE 1074
            + H GR+N Y F+   +K  L  + P  +  D          V +    K E D     +
Sbjct: 671  SMHHGRSNQYSFLYHDKKIVLHPMSPEDILRD---------DVAKAAKSKCESDKKAQSD 721

Query: 1073 G-QGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTNQATSILPSSVTSLLQC 897
            G +  T       ++   S   E +   ++   LV    L+  +     LP +V ++LQ 
Sbjct: 722  GKKPETINLKPRYLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQE 781

Query: 896  YDDLAPKKMPKKISHPQGLHISIPI 822
            Y D+ PK++P  +   +G+   I +
Sbjct: 782  YSDVFPKEVPPGLPLVRGIEHQIDL 806


>emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group]
            gi|38345441|emb|CAE03293.2| OSJNBb0046P18.9 [Oryza sativa
            Japonica Group]
          Length = 1134

 Score =  166 bits (421), Expect = 2e-38
 Identities = 97/297 (32%), Positives = 149/297 (50%), Gaps = 2/297 (0%)
 Frame = -2

Query: 1610 ALVVRRVMCALAREA-LDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            +L+V+RV+     +A  +QR  LF  +  ++++ C +IIDGGSC N  S  +VE +  ST
Sbjct: 640  SLIVQRVLSTQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALST 699

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
            + H  PY  QW N+ GK KVTK   I F+IG Y D + CDVVPMQAC+ILLGRPWQFD+D
Sbjct: 700  KPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDKD 759

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHEKDTLVVQE 1074
            + H GR+N Y F+   +K  L  +    +  D          V +    K E D     +
Sbjct: 760  SLHHGRSNQYSFLYHDKKIVLHPMSSEDILHD---------DVAKAAKSKCESDKKAQSD 810

Query: 1073 G-QGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTNQATSILPSSVTSLLQC 897
            G +  T      C++   S   E +   ++   LV    L+  +     LP ++ ++LQ 
Sbjct: 811  GKKPETINLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAIANILQE 870

Query: 896  YDDLAPKKMPKKISHPQGLHISIPIPFDLRMTNAIDFVRSVPRVMEKHANVCVVVDR 726
            Y D+ PK++P  +    G+   I +     + N   +  +     E    V  ++D+
Sbjct: 871  YSDVFPKEVPPGLLPVHGIEHQIDLILGASLPNRAPYRTNPEETKEIQRQVHELLDK 927


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  166 bits (420), Expect = 3e-38
 Identities = 102/274 (37%), Positives = 142/274 (51%), Gaps = 11/274 (4%)
 Frame = -2

Query: 1610 ALVVRRVMCA-LAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            +LVV+RV+ A + R   +Q   LF  +  I+++ C +IIDGGSC N  S  +VE +  ST
Sbjct: 468  SLVVQRVLSAQMERAEQNQLHTLFQTKCVIKERSCHVIIDGGSCNNLASAEMVEKLALST 527

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
            Q H  PY  QW N  GKVKVT+   + F+IG Y D + CDVVPMQAC +LLGRPWQFD+D
Sbjct: 528  QPHPQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKD 587

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KR---------VQREEMEKH 1101
            + H G++N Y F+  G+K  L  + P  + +D        K          +   E+EKH
Sbjct: 588  SLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANELEKH 647

Query: 1100 -EKDTLVVQEGQGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTNQATSILP 924
             +K T  VQ  +   + K   C I   S   E   +      LV    L         L 
Sbjct: 648  KKKPTNSVQNNKNEIKLKGS-CFIATKSDLDEVDTDTVFCYALVCKETLFPIEDTPISLR 706

Query: 923  SSVTSLLQCYDDLAPKKMPKKISHPQGLHISIPI 822
              VT+LLQ Y D+ PK++P  +   +G+   I +
Sbjct: 707  PPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDL 740


>ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759439 [Setaria italica]
          Length = 696

 Score =  166 bits (419), Expect = 4e-38
 Identities = 103/277 (37%), Positives = 148/277 (53%), Gaps = 14/277 (5%)
 Frame = -2

Query: 1610 ALVVRRVMCALAREA-LDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFST 1434
            +LVV+RV+ A   +A  +QR  LF  +  I+++ C +IIDGGSC N  S  +VE +   T
Sbjct: 75   SLVVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALCT 134

Query: 1433 QKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDRD 1254
            Q H  PY  QW N  GKVKVT+   + F+IG Y D + CDVVP+QAC +LLGRPWQFD D
Sbjct: 135  QPHPQPYYIQWLNSSGKVKVTQLVRVNFAIGSYHDSIDCDVVPIQACSMLLGRPWQFDID 194

Query: 1253 AQHSGRTNTY*FILGGRKYTLALLMPYQVSEDYRVMKEL*KRVQREEMEKHEKDTLVVQE 1074
            + H G+TN Y F+   +K  L  + P  + +D         +V  +E  K E + +V  E
Sbjct: 195  SLHHGKTNQYSFMHNDKKLVLHPMSPEAILKDELARA---SKVMNQEHAKSE-NQIVAHE 250

Query: 1073 GQGSTQEKTKMCMIVKPSTCLEG---------VDE--KNLRLC--LVLNYPLLHTNQATS 933
             +  T++ TK     K    L+G         +DE   N  +C  L+    L    +  S
Sbjct: 251  LKKHTKKNTKSAHNNKNEIKLKGSCFIATKSDLDEIDANTAICYALICKQTLFSLQEIPS 310

Query: 932  ILPSSVTSLLQCYDDLAPKKMPKKISHPQGLHISIPI 822
             LP  VT+LLQ Y D+ P ++P  +   +G+   I +
Sbjct: 311  SLPPVVTNLLQEYADIFPNEVPPGLPPTRGIEHQIDL 347


>ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772114 [Setaria italica]
          Length = 1246

 Score =  165 bits (418), Expect = 5e-38
 Identities = 106/272 (38%), Positives = 144/272 (52%), Gaps = 9/272 (3%)
 Frame = -2

Query: 1610 ALVVRRVMCA--LAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFS 1437
            +LVVRRV+    +A E   QR NLF  R K++ +VC  IIDGGSC N VS  L+E +   
Sbjct: 388  SLVVRRVLSTQFVAAEQ-GQRHNLFQFRCKVKGQVCRFIIDGGSCNNIVSALLLEKLGLQ 446

Query: 1436 TQKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDR 1257
             ++H  PY  QW N+ G VKV+    + FSIG Y  E+ CD+VPMQACH+LLGRPWQFD 
Sbjct: 447  PRRHPHPYHMQWLNNSGTVKVSAMIRLSFSIGDYHGEVDCDIVPMQACHLLLGRPWQFDV 506

Query: 1256 DAQHSGRTNTY*FILGGRKYTLALLMPYQV-SEDYRVMK--EL*KRVQREEMEKHEKDTL 1086
            D+ H GR+N Y FI   +K  L  L P ++ + D   MK  E  KR   E     + +T 
Sbjct: 507  DSVHFGRSNKYTFIANDKKVVLVPLSPEEIHASDVARMKREESEKRKLSEAPNTSKGETP 566

Query: 1085 V----VQEGQGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLNYPLLHTNQATSILPSS 918
                 ++    S Q +   C+ V  S   E  +       L+    LL T    S LPS 
Sbjct: 567  TPSSHIKPHSTSKQLRQNECLFVSRSALREVKNTTAPFFVLLHKEVLLSTTDLPSSLPSV 626

Query: 917  VTSLLQCYDDLAPKKMPKKISHPQGLHISIPI 822
            V  LLQ + D+ P ++P  +   +G+   I +
Sbjct: 627  VLDLLQDFKDVFPDEVPAGLPPLRGIEHQIDL 658


>ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752491 [Setaria italica]
          Length = 1295

 Score =  164 bits (415), Expect = 1e-37
 Identities = 106/276 (38%), Positives = 150/276 (54%), Gaps = 13/276 (4%)
 Frame = -2

Query: 1610 ALVVRRVMCA--LAREALDQRRNLFHARRKIQDKVCSLIIDGGSCTNAVSKSLVEHMKFS 1437
            +LVVRRV+    +A E   QR NLF +R K++ +VC  IIDGGSC N VS  LVE +   
Sbjct: 521  SLVVRRVLSTQFVAAEQ-GQRHNLFQSRCKVKGQVCRFIIDGGSCNNIVSALLVEKLGLQ 579

Query: 1436 TQKHHSPYKFQWFNDYGKVKVTKQSVIKFSIGKYEDEMLCDVVPMQACHILLGRPWQFDR 1257
             ++H  PY  QW N+ G VKV+    + FSIG Y  E+ CD+VPMQACH+LLGRPWQFD 
Sbjct: 580  PRRHPHPYHMQWLNNSGTVKVSAMIRLTFSIGDYHGEVDCDIVPMQACHLLLGRPWQFDV 639

Query: 1256 DAQHSGRTNTY*FILGGRKYTLALLMPYQV-SEDYRVMKEL*KRVQREEMEKHEKDTLVV 1080
            D+ H GR+N Y FI   +K  L  L P ++ + D         R++REE EK +    + 
Sbjct: 640  DSVHFGRSNKYTFIANDKKVVLVPLSPEEIHASDV-------ARMKREESEKRK----LS 688

Query: 1079 QEGQGSTQEKTKMCMIVKPSTCLEGVDEKNLRLCLVLN----YPLLH------TNQATSI 930
            +    S  E       +KP +  + + +     CL ++    + LLH      T   +S 
Sbjct: 689  EAPNTSKGETPTPSSHIKPHSTSKQLRQNE---CLFVSRTPFFVLLHKEVLLSTTDLSSS 745

Query: 929  LPSSVTSLLQCYDDLAPKKMPKKISHPQGLHISIPI 822
            LPS V  LLQ + D+ P ++P  +   +G+   I +
Sbjct: 746  LPSVVLDLLQDFKDVFPDEVPAGLPPLRGIEHQIDL 781