BLASTX nr result
ID: Atropa21_contig00021892
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00021892
(865 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004252363.1| PREDICTED: mediator of RNA polymerase II tra... 75 2e-22
ref|XP_004252362.1| PREDICTED: mediator of RNA polymerase II tra... 61 6e-15
ref|XP_006343025.1| PREDICTED: mediator of RNA polymerase II tra... 56 5e-14
ref|XP_004235629.1| PREDICTED: mediator of RNA polymerase II tra... 56 8e-14
ref|XP_004235630.1| PREDICTED: mediator of RNA polymerase II tra... 56 8e-14
ref|XP_002515912.1| RNA polymerase II mediator complex subunit, ... 46 5e-10
ref|XP_004149176.1| PREDICTED: LOW QUALITY PROTEIN: mediator of ... 47 2e-09
gb|EXB74612.1| Putative mediator of RNA polymerase II transcript... 49 2e-09
ref|XP_004165668.1| PREDICTED: mediator of RNA polymerase II tra... 47 2e-09
ref|XP_004235631.1| PREDICTED: mediator of RNA polymerase II tra... 45 2e-09
gb|AGZ15418.1| mediator of RNA polymerase II transcription subun... 47 3e-09
gb|AFK47538.1| unknown [Medicago truncatula] 47 3e-09
gb|ESW07605.1| hypothetical protein PHAVU_010G143300g [Phaseolus... 47 3e-09
ref|XP_004510328.1| PREDICTED: mediator of RNA polymerase II tra... 45 4e-09
ref|XP_004510329.1| PREDICTED: mediator of RNA polymerase II tra... 45 4e-09
ref|XP_006426448.1| hypothetical protein CICLE_v10026335mg [Citr... 44 5e-09
ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymera... 44 6e-09
emb|CBI36012.3| unnamed protein product [Vitis vinifera] 44 7e-09
ref|XP_003531638.1| PREDICTED: mediator of RNA polymerase II tra... 47 8e-09
ref|XP_006585556.1| PREDICTED: mediator of RNA polymerase II tra... 47 8e-09
>ref|XP_004252363.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform 2 [Solanum lycopersicum]
Length = 225
Score = 75.5 bits (184), Expect(2) = 2e-22
Identities = 37/48 (77%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Frame = -3
Query: 428 VFLSR-WLQKMRVQHLNLRVLRKPLTSTNISELIIFLLPYNASYHQYL 288
VF R WL KMR QHLNLR+LR+PLTS N+SE IIFLLPYNA YHQYL
Sbjct: 137 VFAGRLWLLKMRAQHLNLRLLRRPLTSRNLSESIIFLLPYNARYHQYL 184
Score = 57.4 bits (137), Expect(2) = 2e-22
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = -2
Query: 282 HLFRMAIHHLQQQKPLKTSKRRDSCVQLIPLSIKVRLRE 166
HLF A++ L QQKPLKTSK++ SC+QLIPLSIK R RE
Sbjct: 187 HLFLKAMYRLPQQKPLKTSKKKPSCLQLIPLSIKARQRE 225
>ref|XP_004252362.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform 1 [Solanum lycopersicum]
Length = 251
Score = 60.8 bits (146), Expect(2) = 6e-15
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQTERQLRPVDPIIDQGPSKRVK 161
+GY PPSTA+AS N+Q E QL PVDPIIDQGPSKR+K
Sbjct: 214 EGYVPPSTAEASENEQEETQLPPVDPIIDQGPSKRMK 250
Score = 47.0 bits (110), Expect(2) = 6e-15
Identities = 23/30 (76%), Positives = 23/30 (76%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TIDF E KRVDHI ASLQR LPPVP P F
Sbjct: 183 TIDFKELKRVDHIFASLQRTLPPVPPPPPF 212
>ref|XP_006343025.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Solanum tuberosum]
Length = 247
Score = 55.8 bits (133), Expect(2) = 5e-14
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQTERQLRPVDPIIDQGPSKRVK 161
+GY PPST++ S NQQ E Q P+DPIIDQGPSKR+K
Sbjct: 210 EGYAPPSTSEPSENQQPETQPPPIDPIIDQGPSKRMK 246
Score = 48.9 bits (115), Expect(2) = 5e-14
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = -2
Query: 360 IDFNEHKRVDHILASLQRKLPPVPLPHLF 274
IDF E KRVDHILASLQRKLPPVP P F
Sbjct: 180 IDFKELKRVDHILASLQRKLPPVPPPPPF 208
>ref|XP_004235629.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform 1 [Solanum lycopersicum]
Length = 248
Score = 55.8 bits (133), Expect(2) = 8e-14
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQTERQLRPVDPIIDQGPSKRVK 161
+GY PPST++ S NQQ E Q P+DPIIDQGPSKR+K
Sbjct: 210 EGYAPPSTSEPSENQQPETQPPPIDPIIDQGPSKRMK 246
Score = 48.1 bits (113), Expect(2) = 8e-14
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = -2
Query: 360 IDFNEHKRVDHILASLQRKLPPVPLP 283
IDF E KRVDHILASLQRKLP VPLP
Sbjct: 180 IDFKELKRVDHILASLQRKLPAVPLP 205
>ref|XP_004235630.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform 2 [Solanum lycopersicum]
Length = 247
Score = 55.8 bits (133), Expect(2) = 8e-14
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQTERQLRPVDPIIDQGPSKRVK 161
+GY PPST++ S NQQ E Q P+DPIIDQGPSKR+K
Sbjct: 210 EGYAPPSTSEPSENQQPETQPPPIDPIIDQGPSKRMK 246
Score = 48.1 bits (113), Expect(2) = 8e-14
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = -2
Query: 360 IDFNEHKRVDHILASLQRKLPPVPLP 283
IDF E KRVDHILASLQRKLP VPLP
Sbjct: 180 IDFKELKRVDHILASLQRKLPAVPLP 205
>ref|XP_002515912.1| RNA polymerase II mediator complex subunit, putative [Ricinus
communis] gi|223544817|gb|EEF46332.1| RNA polymerase II
mediator complex subunit, putative [Ricinus communis]
Length = 251
Score = 46.2 bits (108), Expect(2) = 5e-10
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = -2
Query: 360 IDFNEHKRVDHILASLQRKLPPVPLPHLF 274
IDF E KR+DHILAS+QRKLPP P P F
Sbjct: 180 IDFKEVKRIDHILASIQRKLPPAPPPPPF 208
Score = 45.1 bits (105), Expect(2) = 5e-10
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQT----ERQLRPVDPIIDQGPSKRVK 161
+GY PP+T +A +T E Q PVDPIIDQGP+KR+K
Sbjct: 210 EGYVPPATVEAEKGSETRQAVETQPPPVDPIIDQGPAKRMK 250
>ref|XP_004149176.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 6-like [Cucumis sativus]
Length = 260
Score = 47.4 bits (111), Expect(2) = 2e-09
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TI+F E KRVDHILASLQRKLPP P P F
Sbjct: 186 TINFKEVKRVDHILASLQRKLPPAPPPPPF 215
Score = 42.0 bits (97), Expect(2) = 2e-09
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = -1
Query: 271 DGYTPPSTA---KAS*NQQTERQLRPVDPIIDQGPSKRVK 161
+GY P +TA K NQQ E Q DPIIDQGP+KR+K
Sbjct: 217 EGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMK 256
>gb|EXB74612.1| Putative mediator of RNA polymerase II transcription subunit 6
[Morus notabilis]
Length = 251
Score = 49.3 bits (116), Expect(2) = 2e-09
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TIDF E KR+DHILASLQRKLPP P P F
Sbjct: 179 TIDFKEMKRIDHILASLQRKLPPAPPPPPF 208
Score = 40.0 bits (92), Expect(2) = 2e-09
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*N----QQTERQLRPVDPIIDQGPSKRVK 161
+GY PP A + Q E Q PVDPIIDQGP+KR++
Sbjct: 210 EGYVPPQNADSEKGPEAQQAGEAQQAPVDPIIDQGPAKRMR 250
>ref|XP_004165668.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like [Cucumis sativus]
Length = 226
Score = 47.4 bits (111), Expect(2) = 2e-09
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TI+F E KRVDHILASLQRKLPP P P F
Sbjct: 152 TINFKEVKRVDHILASLQRKLPPAPPPPPF 181
Score = 42.0 bits (97), Expect(2) = 2e-09
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = -1
Query: 271 DGYTPPSTA---KAS*NQQTERQLRPVDPIIDQGPSKRVK 161
+GY P +TA K NQQ E Q DPIIDQGP+KR+K
Sbjct: 183 EGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMK 222
>ref|XP_004235631.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform 3 [Solanum lycopersicum]
Length = 221
Score = 45.4 bits (106), Expect(2) = 2e-09
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = -3
Query: 428 VFLSR-WLQKMRVQHLNLRVLRKPLTSTNISELIIFLLPYNASYHQYLC 285
VF +R W +K +HL L ++P TS N+SELI LL Y+ S+ QYLC
Sbjct: 133 VFAARLWSRKTIAKHLKLSPPKRPSTSRNLSELITSLLLYSGSFLQYLC 181
Score = 43.5 bits (101), Expect(2) = 2e-09
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -2
Query: 282 HLFRMAIHHLQQQKPLKTSKRRDSCVQLIPLSIKVRLRE 166
HL++ A+H L Q PLKTS +R S +QLI L IK RLRE
Sbjct: 183 HLYQKAMHPLPLQNPLKTSNQRLSRLQLILLLIKARLRE 221
>gb|AGZ15418.1| mediator of RNA polymerase II transcription subunit 6 [Phaseolus
vulgaris]
Length = 250
Score = 47.0 bits (110), Expect(2) = 3e-09
Identities = 23/30 (76%), Positives = 23/30 (76%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TID E KRVDHILASLQRKLPP P P F
Sbjct: 178 TIDIKEVKRVDHILASLQRKLPPAPPPPPF 207
Score = 41.6 bits (96), Expect(2) = 3e-09
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQT----ERQLRPVDPIIDQGPSKRVK 161
+GY PP TA+A +T E Q DPIIDQGP+KR+K
Sbjct: 209 EGYVPPPTAEAEKGTETQEAAETQAPTADPIIDQGPAKRMK 249
>gb|AFK47538.1| unknown [Medicago truncatula]
Length = 248
Score = 47.0 bits (110), Expect(2) = 3e-09
Identities = 23/30 (76%), Positives = 23/30 (76%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TID E KRVDHILASLQRKLPP P P F
Sbjct: 176 TIDLKEIKRVDHILASLQRKLPPAPPPPPF 205
Score = 41.6 bits (96), Expect(2) = 3e-09
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTA---KAS*NQQTERQLRP-VDPIIDQGPSKRVK 161
+GY PPSTA K Q+ L P VDPI+DQGP+KR+K
Sbjct: 207 EGYVPPSTAETEKGPETQEAAESLAPTVDPILDQGPAKRMK 247
>gb|ESW07605.1| hypothetical protein PHAVU_010G143300g [Phaseolus vulgaris]
Length = 247
Score = 47.0 bits (110), Expect(2) = 3e-09
Identities = 23/30 (76%), Positives = 23/30 (76%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TID E KRVDHILASLQRKLPP P P F
Sbjct: 175 TIDIKEVKRVDHILASLQRKLPPAPPPPPF 204
Score = 41.6 bits (96), Expect(2) = 3e-09
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQT----ERQLRPVDPIIDQGPSKRVK 161
+GY PP TA+A +T E Q DPIIDQGP+KR+K
Sbjct: 206 EGYVPPPTAEAEKGTETQEAAETQAPTADPIIDQGPAKRMK 246
>ref|XP_004510328.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform X1 [Cicer arietinum]
Length = 252
Score = 44.7 bits (104), Expect(2) = 4e-09
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
T+D E KRVDHILASLQ KLPP P P F
Sbjct: 180 TVDIKELKRVDHILASLQHKLPPAPPPPPF 209
Score = 43.5 bits (101), Expect(2) = 4e-09
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQT----ERQLRPVDPIIDQGPSKRVK 161
+GY PPSTA+ +T E Q VDPIIDQGP+KR+K
Sbjct: 211 EGYVPPSTAETEKGPETQEATESQAPSVDPIIDQGPAKRMK 251
>ref|XP_004510329.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform X2 [Cicer arietinum]
Length = 249
Score = 44.7 bits (104), Expect(2) = 4e-09
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
T+D E KRVDHILASLQ KLPP P P F
Sbjct: 177 TVDIKELKRVDHILASLQHKLPPAPPPPPF 206
Score = 43.5 bits (101), Expect(2) = 4e-09
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQT----ERQLRPVDPIIDQGPSKRVK 161
+GY PPSTA+ +T E Q VDPIIDQGP+KR+K
Sbjct: 208 EGYVPPSTAETEKGPETQEATESQAPSVDPIIDQGPAKRMK 248
>ref|XP_006426448.1| hypothetical protein CICLE_v10026335mg [Citrus clementina]
gi|557528438|gb|ESR39688.1| hypothetical protein
CICLE_v10026335mg [Citrus clementina]
Length = 251
Score = 43.9 bits (102), Expect(2) = 5e-09
Identities = 22/30 (73%), Positives = 22/30 (73%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TID E KRVD ILASLQRKLPP P P F
Sbjct: 179 TIDLKEVKRVDQILASLQRKLPPAPPPPPF 208
Score = 43.9 bits (102), Expect(2) = 5e-09
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQTERQLRP----VDPIIDQGPSKRVK 161
+GY PP T +A + +T++ P +DPIIDQGP+KRVK
Sbjct: 210 EGYAPPQTEEAEKDPETQQTAEPQPPAIDPIIDQGPAKRVK 250
>ref|XP_002282496.1| PREDICTED: putative mediator of RNA polymerase II transcription
subunit 6 [Vitis vinifera]
Length = 258
Score = 44.3 bits (103), Expect(2) = 6e-09
Identities = 22/30 (73%), Positives = 22/30 (73%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TIDF E RVD ILASLQRKLPP P P F
Sbjct: 186 TIDFKEVMRVDQILASLQRKLPPAPPPPQF 215
Score = 43.1 bits (100), Expect(2) = 6e-09
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQTER----QLRPVDPIIDQGPSKRVK 161
+GY PP TA+ +T++ QL +DPIIDQGPSKR+K
Sbjct: 217 EGYAPPPTAEGEKGPETQQAAEPQLPALDPIIDQGPSKRMK 257
>emb|CBI36012.3| unnamed protein product [Vitis vinifera]
Length = 226
Score = 44.3 bits (103), Expect(2) = 7e-09
Identities = 22/30 (73%), Positives = 22/30 (73%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TIDF E RVD ILASLQRKLPP P P F
Sbjct: 154 TIDFKEVMRVDQILASLQRKLPPAPPPPQF 183
Score = 43.1 bits (100), Expect(2) = 7e-09
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQTER----QLRPVDPIIDQGPSKRVK 161
+GY PP TA+ +T++ QL +DPIIDQGPSKR+K
Sbjct: 185 EGYAPPPTAEGEKGPETQQAAEPQLPALDPIIDQGPSKRMK 225
>ref|XP_003531638.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform X1 [Glycine max]
Length = 252
Score = 47.0 bits (110), Expect(2) = 8e-09
Identities = 23/30 (76%), Positives = 23/30 (76%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TID E KRVDHILASLQRKLPP P P F
Sbjct: 180 TIDIKEVKRVDHILASLQRKLPPAPPPPPF 209
Score = 40.0 bits (92), Expect(2) = 8e-09
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQT----ERQLRPVDPIIDQGPSKRVK 161
+GY PP TA+ +T E Q DPIIDQGP+KR+K
Sbjct: 211 EGYVPPPTAETEKGTETQEAAETQAPTADPIIDQGPAKRMK 251
>ref|XP_006585556.1| PREDICTED: mediator of RNA polymerase II transcription subunit
6-like isoform X2 [Glycine max]
Length = 249
Score = 47.0 bits (110), Expect(2) = 8e-09
Identities = 23/30 (76%), Positives = 23/30 (76%)
Frame = -2
Query: 363 TIDFNEHKRVDHILASLQRKLPPVPLPHLF 274
TID E KRVDHILASLQRKLPP P P F
Sbjct: 177 TIDIKEVKRVDHILASLQRKLPPAPPPPPF 206
Score = 40.0 bits (92), Expect(2) = 8e-09
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -1
Query: 271 DGYTPPSTAKAS*NQQT----ERQLRPVDPIIDQGPSKRVK 161
+GY PP TA+ +T E Q DPIIDQGP+KR+K
Sbjct: 208 EGYVPPPTAETEKGTETQEAAETQAPTADPIIDQGPAKRMK 248