BLASTX nr result
ID: Atropa21_contig00021419
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00021419
(1028 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACC93390.1| RNA polymerase beta subunit [Trichocline boecheri] 86 2e-14
gb|ACC93319.1| RNA polymerase beta subunit [Chaetanthera pentaca... 85 4e-14
gb|EXB81188.1| DNA-directed RNA polymerase subunit beta [Morus n... 84 9e-14
ref|NP_054924.1| RNA polymerase beta subunit [Spinacia oleracea]... 84 9e-14
gb|AHH30433.1| RNA polymerase beta subunit (chloroplast) [Bartsi... 84 9e-14
ref|YP_009002250.1| RNA polymerase beta subunit (chloroplast) [P... 84 9e-14
gb|AHE41621.1| RNA polymerase beta subunit protein (chloroplast)... 84 9e-14
gb|AHE41620.1| RNA polymerase beta subunit protein (chloroplast)... 84 9e-14
gb|AHE41619.1| RNA polymerase beta subunit protein (chloroplast)... 84 9e-14
gb|AHE41618.1| RNA polymerase beta subunit protein (chloroplast)... 84 9e-14
gb|AHE41617.1| RNA polymerase beta subunit protein (chloroplast)... 84 9e-14
gb|AHE41633.1| RNA polymerase beta subunit protein (chloroplast)... 84 9e-14
ref|YP_009000324.1| rpoB protein (chloroplast) [Arabis alpina] g... 84 9e-14
ref|YP_008994282.1| RNA polymerase beta subunit [Melianthus vill... 84 9e-14
ref|XP_006356788.1| PREDICTED: DNA-directed RNA polymerase subun... 84 9e-14
ref|YP_008963683.1| RNA polymerase beta subunit (chloroplast) [L... 84 9e-14
ref|YP_008963472.1| RNA polymerase beta subunit (chloroplast) [P... 84 9e-14
gb|AFK81465.1| RNA polymerase beta subunit [Camellia taliensis] 84 9e-14
ref|YP_008963298.1| RNA polymerase beta subunit [Camellia oleife... 84 9e-14
ref|YP_008815929.1| RNA polymerase beta subunit (chloroplast) [L... 84 9e-14
>gb|ACC93390.1| RNA polymerase beta subunit [Trichocline boecheri]
Length = 1030
Score = 86.3 bits (212), Expect = 2e-14
Identities = 39/43 (90%), Positives = 42/43 (97%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRIGPFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 837 LLDRHYRIGPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 879
>gb|ACC93319.1| RNA polymerase beta subunit [Chaetanthera pentacaenoides]
Length = 1028
Score = 85.1 bits (209), Expect = 4e-14
Identities = 38/44 (86%), Positives = 42/44 (95%)
Frame = -1
Query: 458 IILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
++LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 834 VLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 877
>gb|EXB81188.1| DNA-directed RNA polymerase subunit beta [Morus notabilis]
Length = 232
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 39 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 81
>ref|NP_054924.1| RNA polymerase beta subunit [Spinacia oleracea]
gi|133421|sp|P11703.1|RPOB_SPIOL RecName:
Full=DNA-directed RNA polymerase subunit beta; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta; Short=RNA polymerase subunit beta
gi|7636097|emb|CAB88717.1| RNA polymerase beta subunit
[Spinacia oleracea]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>gb|AHH30433.1| RNA polymerase beta subunit (chloroplast) [Bartsia inaequalis]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>ref|YP_009002250.1| RNA polymerase beta subunit (chloroplast) [Pinguicula ehlersiae]
gi|575882132|emb|CDL78806.1| RNA polymerase beta subunit
(chloroplast) [Pinguicula ehlersiae]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>gb|AHE41621.1| RNA polymerase beta subunit protein (chloroplast) [Itea chinensis]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>gb|AHE41620.1| RNA polymerase beta subunit protein (chloroplast) [Daphniphyllum
oldhamii]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>gb|AHE41619.1| RNA polymerase beta subunit protein (chloroplast) [Saxifraga
stolonifera]
Length = 1074
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 881 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 923
>gb|AHE41618.1| RNA polymerase beta subunit protein (chloroplast) [Ribes fasciculatum
var. chinense]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>gb|AHE41617.1| RNA polymerase beta subunit protein (chloroplast) [Hamamelis mollis]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>gb|AHE41633.1| RNA polymerase beta subunit protein (chloroplast) [Paeonia obovata]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>ref|YP_009000324.1| rpoB protein (chloroplast) [Arabis alpina]
gi|571025796|emb|CCW28171.1| rpoB protein (chloroplast)
[Arabis alpina]
Length = 1072
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 879 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 921
>ref|YP_008994282.1| RNA polymerase beta subunit [Melianthus villosus]
gi|527355132|gb|AGS13001.1| RNA polymerase beta subunit
[Melianthus villosus]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>ref|XP_006356788.1| PREDICTED: DNA-directed RNA polymerase subunit beta-like [Solanum
tuberosum]
Length = 751
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 558 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 600
>ref|YP_008963683.1| RNA polymerase beta subunit (chloroplast) [Liquidambar formosana]
gi|491650363|gb|AGL13423.1| RNA polymerase beta subunit
(chloroplast) [Liquidambar formosana]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>ref|YP_008963472.1| RNA polymerase beta subunit (chloroplast) [Penthorum chinense]
gi|403226773|gb|AFR25652.1| RNA polymerase beta subunit
(chloroplast) [Penthorum chinense]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>gb|AFK81465.1| RNA polymerase beta subunit [Camellia taliensis]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>ref|YP_008963298.1| RNA polymerase beta subunit [Camellia oleifera]
gi|388893287|gb|AFK81378.1| RNA polymerase beta subunit
[Camellia oleifera]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919
>ref|YP_008815929.1| RNA polymerase beta subunit (chloroplast) [Lindenbergia philippensis]
gi|557136855|emb|CDI43910.1| RNA polymerase beta subunit
(chloroplast) [Lindenbergia philippensis]
Length = 1070
Score = 84.0 bits (206), Expect = 9e-14
Identities = 38/43 (88%), Positives = 41/43 (95%)
Frame = -1
Query: 455 ILDRHYRIGPFD*RYEQEASRKLVYSELYEASKRTANPWVFEP 327
+LDRHYRI PFD RYEQEASRKLV+SELYEASK+TANPWVFEP
Sbjct: 877 LLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEP 919