BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00019781
         (486 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006350862.1| PREDICTED: transcription initiation factor T...    92   5e-17
ref|XP_006350861.1| PREDICTED: transcription initiation factor T...    92   5e-17
gb|ELW65852.1| Brain-specific homeobox protein like protein [Tup...    62   6e-08
ref|XP_006369676.1| hypothetical protein POPTR_0001s288101g, par...    58   1e-06
ref|XP_002298497.1| predicted protein [Populus trichocarpa]            58   1e-06
gb|EXC45494.1| RNA-binding protein EWS [Morus notabilis]               57   3e-06
ref|WP_009527233.1| hypothetical protein [Eubacteriaceae bacteri...    57   3e-06
gb|EAX04582.1| hCG1999844 [Homo sapiens]                               57   3e-06
gb|ESO95903.1| hypothetical protein LOTGIDRAFT_144349, partial [...    55   7e-06

>ref|XP_006350862.1| PREDICTED: transcription initiation factor TFIID subunit 15b-like
           isoform X2 [Solanum tuberosum]
           gi|565368460|ref|XP_006350863.1| PREDICTED:
           transcription initiation factor TFIID subunit 15b-like
           isoform X3 [Solanum tuberosum]
          Length = 450

 Score = 92.4 bits (228), Expect = 5e-17
 Identities = 44/62 (70%), Positives = 44/62 (70%)
 Frame = -2

Query: 368 SRNAXXXXXXXXXXXXXRDVGGYAQGPPHALPSYGATDSKYPPPSNTYGGNPDAVPPPTS 189
           SRNA             RD GGYAQGPPHA PSYGA DS YPPPSNTYGGNPDAVPPP S
Sbjct: 174 SRNAGGGRTGSYGGSQGRDGGGYAQGPPHAPPSYGAADSNYPPPSNTYGGNPDAVPPPAS 233

Query: 188 YV 183
           YV
Sbjct: 234 YV 235


>ref|XP_006350861.1| PREDICTED: transcription initiation factor TFIID subunit 15b-like
           isoform X1 [Solanum tuberosum]
          Length = 461

 Score = 92.4 bits (228), Expect = 5e-17
 Identities = 44/62 (70%), Positives = 44/62 (70%)
 Frame = -2

Query: 368 SRNAXXXXXXXXXXXXXRDVGGYAQGPPHALPSYGATDSKYPPPSNTYGGNPDAVPPPTS 189
           SRNA             RD GGYAQGPPHA PSYGA DS YPPPSNTYGGNPDAVPPP S
Sbjct: 185 SRNAGGGRTGSYGGSQGRDGGGYAQGPPHAPPSYGAADSNYPPPSNTYGGNPDAVPPPAS 244

Query: 188 YV 183
           YV
Sbjct: 245 YV 246


>gb|ELW65852.1| Brain-specific homeobox protein like protein [Tupaia chinensis]
          Length = 1699

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 28/97 (28%), Positives = 44/97 (45%)
 Frame = +2

Query: 179 HQHNSWAGELHQGSHHKY*KVVDTCYQLLHKMEEHVEDLEHNHQHLFPDYHHKNQFYHLQ 358
           HQH+    + H   HH +      CY   H  + H     H+H H +  +HH    +H  
Sbjct: 65  HQHHQHHLQHHHHQHHHH-----HCYHHHHHYQHHHHHPHHHHHHHYQHHHHHLHHHHHH 119

Query: 359 HFCYHSYHLFPLDYFHIPHHFHLCYNCYHFCHHDRRN 469
           H+ YH YH    ++ H  HH H  ++ +H  HH  ++
Sbjct: 120 HYQYHHYHCHHCEHHHHLHHHHQ-HHQHHLQHHHHQH 155



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
 Frame = +2

Query: 149 NHTKGDKMQVHQHNSWAGELHQGSHHKY*KVVDTCYQLLHKMEEHVEDLEHNH--QHLFP 322
           +H      Q H H+     LH   HH Y      C+   H    H     H H  QH   
Sbjct: 99  HHHHHHHYQHHHHH-----LHHHHHHHYQYHHYHCHHCEHHHHLHHHHQHHQHHLQHHHH 153

Query: 323 DYHHKNQFYHLQHFCYHSYHLFPLDYFHIPHHFHLCYNC--YHFCHHDRRNQQ 475
            +HH + ++H  H+ +H +HL+     H  +H H C++C  +H  HH  ++ Q
Sbjct: 154 QHHHHHCYHHHHHYQHHHHHLYHHHRHHYQYHHHHCHHCEHHHHLHHHHQHHQ 206



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
 Frame = +2

Query: 179 HQHNSWAGELHQGSHHKY*KVVDTCYQLLHKMEEHVEDLEHNHQHLFPDYHHK----NQF 346
           HQH+    + H   HH +      CY   H  + H   L H+H+H +  +HH        
Sbjct: 141 HQHHQHHLQHHHHQHHHH-----HCYHHHHHYQHHHHHLYHHHRHHYQYHHHHCHHCEHH 195

Query: 347 YHLQHFCYHSYHLFPLDYFHIPHHFHLCYNCYHFCHH 457
           +HL H  +H +H   L + H  HH H  ++C+H  HH
Sbjct: 196 HHLHH--HHQHHQHHLQHHHHQHHHH--HHCHHHNHH 228



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
 Frame = +2

Query: 149 NHTKGDKMQVHQHNSWAGELHQGSHHKY*KVVDTCYQLLHKMEEHVEDLEHNHQHLFPDY 328
           +H      Q H H+    E H   HH +       + L H   +H     ++H H +  +
Sbjct: 38  HHHHPHHYQYHHHHCHHCEHHHHLHHHH---QHHQHHLQHHHHQHHHHHCYHHHHHYQHH 94

Query: 329 HHKNQFYHLQHFCYHSYHLFPLDYFHIPHHFHLCYNC--YHFCHHDRRNQQ 475
           HH    +H  H+ +H +HL    + H  +H + C++C  +H  HH  ++ Q
Sbjct: 95  HHHPHHHHHHHYQHHHHHLHHHHHHHYQYHHYHCHHCEHHHHLHHHHQHHQ 145



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
 Frame = +2

Query: 146 RNHTKGDKMQVHQHNSWAGELHQGSHHKY*KVVDTCYQLLHKMEEHVEDLEHNHQHLFPD 325
           ++H +    Q H H+ +    H   HH +       +   H  + H   L H+H H +  
Sbjct: 69  QHHLQHHHHQHHHHHCYHHHHHYQHHHHH-----PHHHHHHHYQHHHHHLHHHHHHHYQY 123

Query: 326 Y----HHKNQFYHLQHFCYHSYHLFPLDYFHIPHHFHLCYNCYHFCHH 457
           +    HH    +HL H  +H +H   L + H  HH H CY+ +H   H
Sbjct: 124 HHYHCHHCEHHHHLHH--HHQHHQHHLQHHHHQHHHHHCYHHHHHYQH 169


>ref|XP_006369676.1| hypothetical protein POPTR_0001s288101g, partial [Populus
           trichocarpa] gi|550348413|gb|ERP66245.1| hypothetical
           protein POPTR_0001s288101g, partial [Populus
           trichocarpa]
          Length = 275

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 27/47 (57%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
 Frame = -2

Query: 314 DVGGYAQGPPHALPSYGATDSKYPPPSNTYGGNP----DAVPPPTSY 186
           D  GY Q PP +LPSYG     YPP  N+YGGN     +AVPPPTSY
Sbjct: 10  DDSGYNQAPPPSLPSYGGGGGNYPPAPNSYGGNANYGMEAVPPPTSY 56


>ref|XP_002298497.1| predicted protein [Populus trichocarpa]
          Length = 399

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 27/47 (57%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
 Frame = -2

Query: 314 DVGGYAQGPPHALPSYGATDSKYPPPSNTYGGNP----DAVPPPTSY 186
           D  GY Q PP +LPSYG     YPP  N+YGGN     +AVPPPTSY
Sbjct: 134 DDSGYNQAPPPSLPSYGGGGGNYPPAPNSYGGNANYGMEAVPPPTSY 180


>gb|EXC45494.1| RNA-binding protein EWS [Morus notabilis]
          Length = 588

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 29/48 (60%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
 Frame = -2

Query: 314 DVGGYAQG-PPHALPSYGATDSKYPPPSNTYGGN----PDAVPPPTSY 186
           D GGY Q  PP A PSYG T   YPP  N+YGGN     +AVPPPTSY
Sbjct: 200 DEGGYGQVLPPAAPPSYGGTGGNYPPSHNSYGGNANYGTEAVPPPTSY 247


>ref|WP_009527233.1| hypothetical protein [Eubacteriaceae bacterium CM2]
           gi|361964392|gb|EHL17436.1| hypothetical protein
           HMPREF9630_00603 [Eubacteriaceae bacterium CM2]
          Length = 318

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
 Frame = +2

Query: 170 MQVHQHNSWAGELHQGSHHKY*KVVDTCYQLLHKMEEHVEDLEHNHQHLFPDY-HHKNQF 346
           +++H H+   G  H   HH         ++ LHK  +H   LEH+H H   ++ HH +  
Sbjct: 61  VELHNHSDEEGHNHHDEHH---------HEHLHKEHDHGGLLEHHHHHHHDEHEHHHDHH 111

Query: 347 YHLQHFCYHSYHLFPLDYFHIPHHFHLCYNCYHFCHHDRRN 469
           +H +H  +H YH       H  H  H  +N +H   H+ RN
Sbjct: 112 HHDEHEHHHDYH------HHDEHEHHHDHNHHHEHSHEHRN 146


>gb|EAX04582.1| hCG1999844 [Homo sapiens]
          Length = 400

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +2

Query: 176 VHQHNSWAGELHQGSHHKY*KVVDTCYQL-LHKMEEHVEDLEHNHQHLFP-DYHHKNQFY 349
           +H H+ +    H   HH Y      CY    H    H     H+H H  P  YH  +  Y
Sbjct: 142 LHCHHHYYHHHHHHHHHHYHHHCHHCYHHHYHHHHYHCHHHYHHHHHYHPYHYHQHHHHY 201

Query: 350 HLQHFCYHSYHLFPLDYFHIPHHFHLCYNCYHFCHH 457
           H  H+ +H YH      +H PHH   C++ +H+  H
Sbjct: 202 HPHHYHHHYYHCHHHHDYHHPHH---CHHHHHYHQH 234


>gb|ESO95903.1| hypothetical protein LOTGIDRAFT_144349, partial [Lottia gigantea]
          Length = 119

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 25/83 (30%), Positives = 36/83 (43%)
 Frame = +2

Query: 209 HQGSHHKY*KVVDTCYQLLHKMEEHVEDLEHNHQHLFPDYHHKNQFYHLQHFCYHSYHLF 388
           H   HH Y       Y   H    H     H+H H +  +HH   +YH  H  YH +H  
Sbjct: 18  HHYHHHHY-------YHHHHYHHHHHHHHHHHHHHYY--HHHHYHYYHYYHHHYHHHHHH 68

Query: 389 PLDYFHIPHHFHLCYNCYHFCHH 457
              + +  HH+H  Y+ +H+ HH
Sbjct: 69  HHHHHYYHHHYHYHYHHHHYYHH 91