BLASTX nr result
ID: Atropa21_contig00019357
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00019357
(979 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006350483.1| PREDICTED: putative ribonuclease H protein A... 53 2e-15
ref|XP_006356960.1| PREDICTED: putative ribonuclease H protein A... 70 2e-14
ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein A... 72 4e-14
ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein A... 52 4e-13
ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein A... 65 4e-12
ref|XP_006356729.1| PREDICTED: putative ribonuclease H protein A... 65 4e-12
ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588... 53 8e-09
ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein A... 63 2e-07
ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein A... 49 3e-07
ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein A... 49 3e-07
>ref|XP_006350483.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 258
Score = 52.8 bits (125), Expect(3) = 2e-15
Identities = 20/58 (34%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Frame = +1
Query: 490 DATIHDIWGQQGWNLNFR-ILNDWKINRVAELFKVLELCQGIKANEDTIVRKTLSQGL 660
+++++++W + GWNL +R ++ DW++ R+AE + L+ G K EDT+ K ++GL
Sbjct: 93 ESSLYEVWSEHGWNLTYRRLMQDWEVERLAEFYGTLDQFLGFKDGEDTLKWKCHNKGL 150
Score = 43.1 bits (100), Expect(3) = 2e-15
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +2
Query: 314 TAFVASVWKIIRRHWPSFAATTNYKVRSGRKIPFRSDTWDGTQPLN*QYPDLFSL 478
+ + S+W+ IR W F A T V +GRKI F D W G L +PD+ L
Sbjct: 34 STYGTSLWRSIRNLWHGFYAKTECNVSNGRKIRFWEDDWLGNGSLKCLFPDIHHL 88
Score = 33.5 bits (75), Expect(3) = 2e-15
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 702 NAWPWKHIWRVKIPYKV 752
N PWK IW+VKIPYKV
Sbjct: 168 NFLPWKLIWKVKIPYKV 184
>ref|XP_006356960.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 514
Score = 70.1 bits (170), Expect(2) = 2e-14
Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 11/172 (6%)
Frame = +1
Query: 151 EWSTLMQEKAGESR-------YNESLLIK*LWRFFHEDQALWRRVISVKLGQVVSGAPKK 309
+W TL+ K N SLL K LWR+ E+QALWR+VI + Q+ K
Sbjct: 185 KWKTLISSKKAGGLGIKNLRIQNMSLLFKWLWRYNTEEQALWRQVIQCRHEQMGHWTTKP 244
Query: 310 -SNSFCC*RLENNQETLAKFCCYYKLQGKEWKENTFPE*HMGWYTTTKLTIS*PI*F--S 480
++++ ++ + F +++ K+ +F W L F S
Sbjct: 245 VTSTYGVGYWKSIRNLWEVFIANTRVRLGNGKKISFWR--DDWLGNGPLIDQFHDLFILS 302
Query: 481 PTPDATIHDIWGQQGWNLNFR-ILNDWKINRVAELFKVLELCQGIKANEDTI 633
PDAT+ ++W QGWN+ FR +LNDW+I RV +LF LE G+K ED++
Sbjct: 303 SFPDATVEELWTLQGWNIVFRRLLNDWEIPRVTDLFGKLEGFSGLKEEEDSL 354
Score = 36.6 bits (83), Expect(2) = 2e-14
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Frame = +3
Query: 675 LAYLMLLD----NNAWPWKHIWRVKIPYKV 752
+AY L+D N+ WPWK IW+ + P+KV
Sbjct: 368 IAYNYLMDLEQFNDPWPWKEIWKARAPFKV 397
>ref|XP_006354966.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 397
Score = 72.0 bits (175), Expect(2) = 4e-14
Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 24/194 (12%)
Frame = +1
Query: 151 EWSTLMQEKAGES-------RYNESLLIK*LWRFFHEDQALWRRVISVKLGQVVSGAPKK 309
EW TL+ K + N+SLL+K LWRF E+Q+LW RVI K G+ K+
Sbjct: 35 EWKTLLLSKKQGGLAIKNLRKQNKSLLMKWLWRFPLEEQSLWGRVIQAKYGKEGPWKTKE 94
Query: 310 SNSFCC*RLENNQETL-----AKFCCYYKLQGK------EWKEN-----TFPE*HMGWYT 441
S L + L AK C K +W N FP+ H
Sbjct: 95 VTSTYGTSLWRSIRNLWHGFYAKTGCNVNNGRKIRFWEDDWLGNGSLKCLFPDIHH---- 150
Query: 442 TTKLTIS*PI*FSPTPDATIHDIWGQQGWNLNFR-ILNDWKINRVAELFKVLELCQGIKA 618
+ +++++++W + GWNL +R ++ DW++ R+AE + L+ G K
Sbjct: 151 -----------LNQQEESSLYEVWSEHGWNLTYRRLMQDWEVERLAEFYGTLDQFLGFKE 199
Query: 619 NEDTIVRKTLSQGL 660
EDT+ K ++GL
Sbjct: 200 GEDTLKWKCHNKGL 213
Score = 33.5 bits (75), Expect(2) = 4e-14
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 702 NAWPWKHIWRVKIPYKV 752
N PWK IW+VKIPYKV
Sbjct: 231 NFLPWKLIWKVKIPYKV 247
>ref|XP_006352964.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 323
Score = 52.0 bits (123), Expect(3) = 4e-13
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 496 TIHDIWGQQGWNLNFRI-LNDWKINRVAELFKVLELCQGIKANEDTIVRKTLSQGL 660
TI +IW QGWN FR LNDW++ RVAE ++ G++A ED + K S+G+
Sbjct: 84 TIAEIWTTQGWNFQFRRHLNDWEVMRVAEFLNIVGNFNGLQAEEDALWWKGSSKGI 139
Score = 36.6 bits (83), Expect(3) = 4e-13
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 329 SVWKIIRRHWPSFAATTNYKVRSGRKIPFRSDTWDGTQPLN*QYPDLFSL 478
S+W+ IR W + KV +G K F D W + L +PD+++L
Sbjct: 28 SLWRSIRELWEEVKLNSKVKVGNGNKTKFWKDEWHESGNLELLFPDIYNL 77
Score = 33.1 bits (74), Expect(3) = 4e-13
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 708 WPWKHIWRVKIPYKV 752
WPW+ IW+ +IPYKV
Sbjct: 159 WPWRQIWKGRIPYKV 173
>ref|XP_006355601.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 399
Score = 65.5 bits (158), Expect(2) = 4e-12
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Frame = +1
Query: 196 NESLLIK*LWRFFHEDQALWRRVISVKLGQVVSGAPKKSNSFCC*RLENNQETL---AKF 366
+E+L +K LWR+ EDQ +W+RV+ K S K S L + L K
Sbjct: 59 SEALRMKWLWRYSFEDQLMWKRVVGAKYEAEDSWMTKDVTSPYGVSLWRSIRELWEEVKL 118
Query: 367 CCYYKL----QGKEWKENTFPE*HMGWYTTTKLTIS*PI*FSP--TPDATIHDIWGQQGW 528
K+ + K WK+ W+ + L + P ++ + TI +IW QGW
Sbjct: 119 NSKVKVGNGNKTKFWKDE--------WHESGNLELLFPDIYNLVLSQQRTIAEIWTTQGW 170
Query: 529 NLNFRI-LNDWKINRVAELFKVLELCQGIKANEDTIVRKTLSQGL 660
N FR LNDW++ RVAE ++ G++A ED + K S+G+
Sbjct: 171 NFQFRRHLNDWEVMRVAEFLNIVGNFNGLQAEEDALWWKGSSKGI 215
Score = 33.1 bits (74), Expect(2) = 4e-12
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 708 WPWKHIWRVKIPYKV 752
WPW+ IW+ +IPYKV
Sbjct: 235 WPWRQIWKGRIPYKV 249
>ref|XP_006356729.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 330
Score = 65.5 bits (158), Expect(2) = 4e-12
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Frame = +1
Query: 196 NESLLIK*LWRFFHEDQALWRRVISVKLGQVVSGAPKKSNSFCC*RLENNQETL---AKF 366
+E+L +K LWR+ EDQ +W+RV+ K S K S L + L K
Sbjct: 77 SEALRMKWLWRYSFEDQLMWKRVVGAKYEAEDSWMTKDVTSPYGVSLWRSIRELWEEVKL 136
Query: 367 CCYYKL----QGKEWKENTFPE*HMGWYTTTKLTIS*PI*FSP--TPDATIHDIWGQQGW 528
K+ + K WK+ W+ + L + P ++ + TI +IW QGW
Sbjct: 137 NSKVKVGNGNKTKFWKDE--------WHESGNLELLFPDIYNLVLSQQRTIAEIWTTQGW 188
Query: 529 NLNFRI-LNDWKINRVAELFKVLELCQGIKANEDTIVRKTLSQGL 660
N FR LNDW++ RVAE ++ G++A ED + K S+G+
Sbjct: 189 NFQFRRHLNDWEVMRVAEFLNIVGNFNGLQAEEDALWWKGSSKGI 233
Score = 33.1 bits (74), Expect(2) = 4e-12
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 708 WPWKHIWRVKIPYKV 752
WPW+ IW+ +IPYKV
Sbjct: 253 WPWRQIWKGRIPYKV 267
>ref|XP_006352585.1| PREDICTED: uncharacterized protein LOC102588593 [Solanum tuberosum]
Length = 255
Score = 52.8 bits (125), Expect(2) = 8e-09
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 496 TIHDIWGQQGWNLNFR-ILNDWKINRVAELFKVLELCQGIKANEDTIVRKTLSQGLIHSK 672
T+ +W QGW+L FR LNDW+++RVA L L G+ + DT + K +G+ K
Sbjct: 15 TVAQVWSPQGWDLIFRRALNDWEVDRVAGLLHTLNAFPGVTESPDTPIWKMHKKGIFSVK 74
Query: 673 ILLI*CYWT 699
CYW+
Sbjct: 75 S----CYWS 79
Score = 34.7 bits (78), Expect(2) = 8e-09
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 708 WPWKHIWRVKIPYKV 752
WPWK IW++KIP+KV
Sbjct: 90 WPWKLIWKIKIPHKV 104
>ref|XP_006353602.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 517
Score = 62.8 bits (151), Expect = 2e-07
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Frame = +1
Query: 196 NESLLIK*LWRFFHEDQALWRRVISVKLGQV------VSGAPKKSNSFCC*R-LENNQET 354
NESLL K LWR+ E +LW+ VI K G++ ++ P ++ R L + ET
Sbjct: 177 NESLLKKWLWRYTEERNSLWKEVIIAKYGELNPWCTEITTEPYGVGAWRSIRNLWSQMET 236
Query: 355 LAKFCCYYKLQGKEWKENTFPE*HMGWYTTTKLTIS*PI*FS--PTPDATIHDIWGQQGW 528
+ K WK+ W + L P F PDA + D W +QGW
Sbjct: 237 NLYIKVGSGTKTKFWKDV--------WIDQSPLRDLFPDLFQICGNPDANVGDCWTEQGW 288
Query: 529 NLNF-RILNDWKINRVAELFKVL 594
+L F R+LNDW++ RVAE+ +L
Sbjct: 289 DLVFRRLLNDWEVERVAEILGML 311
>ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 556
Score = 49.3 bits (116), Expect(2) = 3e-07
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 12/176 (6%)
Frame = +1
Query: 193 YNESLLIK*LWRFFHEDQALWRRVISVKLGQVVSGAPKKSNSFCC*RLENN-----QETL 357
+ ++LL+K L ++ +E+Q LWRRVI K S K + L + +E
Sbjct: 215 HGKALLMKWLCKYSNENQTLWRRVIGAKYENQDSWMTKIVTTPYGISLWRSIRALWEEVK 274
Query: 358 AKFCCYYKLQGKE--WKENTFPE*HMGWYTTTKLTIS*PI*FSPT--PDATIHDIWGQQG 525
KF K WK+ W+ L P ++ TI ++W QG
Sbjct: 275 PKFKMKVGNGNKIKFWKDE--------WHEKGNLETLFPDIYNLAMFQQRTIAELWTPQG 326
Query: 526 WNLNF-RILNDWKINRVAELFKVLELCQGIKANEDTIVRKTLSQG--LIHSKILLI 684
WN F R NDW++ R+AE K++ G++A ED + K ++G +HS L+
Sbjct: 327 WNFIFRREPNDWEVMRLAEFLKLVGHFTGLQAYEDMLWWKGNNRGEFKVHSAYRLM 382
Score = 32.7 bits (73), Expect(2) = 3e-07
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 708 WPWKHIWRVKIPYKV 752
WPWK +W+ +IP+KV
Sbjct: 392 WPWKQVWKCRIPHKV 406
>ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
tuberosum]
Length = 450
Score = 49.3 bits (116), Expect(2) = 3e-07
Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 12/176 (6%)
Frame = +1
Query: 193 YNESLLIK*LWRFFHEDQALWRRVISVKLGQVVSGAPKKSNSFCC*RLENN-----QETL 357
+ ++LL+K L ++ +E+Q LWRRVI K S K + L + +E
Sbjct: 109 HGKALLMKWLCKYSNENQTLWRRVIGAKYENQDSWMTKIVTTPYGISLWRSIRALWEEVK 168
Query: 358 AKFCCYYKLQGKE--WKENTFPE*HMGWYTTTKLTIS*PI*FSPT--PDATIHDIWGQQG 525
KF K WK+ W+ L P ++ TI ++W QG
Sbjct: 169 PKFKMKVGNGNKIKFWKDE--------WHEKGNLETLFPDIYNLAMFQQRTIAELWTPQG 220
Query: 526 WNLNF-RILNDWKINRVAELFKVLELCQGIKANEDTIVRKTLSQG--LIHSKILLI 684
WN F R NDW++ R+AE K++ G++A ED + K ++G +HS L+
Sbjct: 221 WNFIFRREPNDWEVMRLAEFLKLVGHFTGLQAYEDMLWWKGNNRGEFKVHSAYRLM 276
Score = 32.7 bits (73), Expect(2) = 3e-07
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 708 WPWKHIWRVKIPYKV 752
WPWK +W+ +IP+KV
Sbjct: 286 WPWKQVWKCRIPHKV 300