BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00019327
         (902 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   330   3e-88
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   330   4e-88
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...   323   7e-86
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   323   7e-86
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...   319   1e-84
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   195   2e-47
gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobrom...   178   3e-42
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   172   2e-40
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...   167   5e-39
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...   167   5e-39
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...   167   5e-39
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   166   1e-38
gb|ABD96891.1| hypothetical protein [Cleome spinosa]                  160   6e-37
ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Popu...   156   9e-36
emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]      155   2e-35
ref|XP_002533596.1| conserved hypothetical protein [Ricinus comm...   152   2e-34
ref|XP_006373532.1| hypothetical protein POPTR_0017s14590g [Popu...   147   5e-33
ref|XP_006400090.1| hypothetical protein EUTSA_v10012544mg [Eutr...   147   7e-33
ref|XP_006289882.1| hypothetical protein CARUB_v10003497mg [Caps...   140   5e-31
gb|EOY01555.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...   136   1e-29

>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like [Solanum lycopersicum]
          Length = 1022

 Score =  330 bits (847), Expect = 3e-88
 Identities = 173/256 (67%), Positives = 188/256 (73%), Gaps = 4/256 (1%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTDLETNPYNNSPIMWRNIVKQFSSRTPQKLLLNCKNRTYSFLG 325
           MS TKTPISLTI+F+QFTDLETNPY+ SPIMWRNIVKQFS+RTPQK+LL  KN  YS+LG
Sbjct: 1   MSCTKTPISLTIRFDQFTDLETNPYHISPIMWRNIVKQFSTRTPQKILLTSKNHAYSYLG 60

Query: 326 YGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPLLYAMK----NQD 493
           +G  S+FKDK  LRSFI VSCS++GF EMGFQN GEFLPGDEFL RPLL AMK    N D
Sbjct: 61  FGLHSVFKDKRTLRSFIPVSCSNSGFLEMGFQNLGEFLPGDEFLRRPLLCAMKSQVSNND 120

Query: 494 FCRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXXXXXXXXXXXXXMLTS 673
            CRKNY                   DVSVVGEVQ                      MLTS
Sbjct: 121 ICRKNYASVAEAVAVSSTDA---EEDVSVVGEVQELLTELKKEEKKQFTFRRRKQRMLTS 177

Query: 674 GMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLR 853
           G+  RKY +L RRQVK+ET+AWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLR
Sbjct: 178 GIDRRKYPALMRRQVKIETQAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLR 237

Query: 854 DKIAEEQEFCSQGKSK 901
           DKIA+EQE C QGKSK
Sbjct: 238 DKIAQEQELCIQGKSK 253


>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 1019

 Score =  330 bits (846), Expect = 4e-88
 Identities = 176/256 (68%), Positives = 189/256 (73%), Gaps = 4/256 (1%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTDLETNPYNNSPIMWRNIVKQFSSRTPQKLLLNCKNRTYSFLG 325
           MS TKTPISLTIKFNQFT+LETNPY NSPIMWRNIVKQFSSRTPQK+LL  KNRTYSFLG
Sbjct: 1   MSCTKTPISLTIKFNQFTNLETNPYQNSPIMWRNIVKQFSSRTPQKILLTSKNRTYSFLG 60

Query: 326 YGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPLLYAMK----NQD 493
           +GQDS+FKDK  LRSFI VSCS++GF EMGFQN GEF   DEFL RPLL AMK    N D
Sbjct: 61  FGQDSVFKDKRILRSFIPVSCSNSGFLEMGFQNLGEF---DEFLRRPLLCAMKSQVSNND 117

Query: 494 FCRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXXXXXXXXXXXXXMLTS 673
            CRK+Y                   DVSVVGEVQ                      +LTS
Sbjct: 118 ICRKSYASVAEAVAVSSTDA---EEDVSVVGEVQELLTELKKEEKKQFTFRRRNQRLLTS 174

Query: 674 GMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLR 853
           G+  RKY +LKRRQVK+ET+AWE AAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLR
Sbjct: 175 GIDRRKYPALKRRQVKIETQAWELAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLR 234

Query: 854 DKIAEEQEFCSQGKSK 901
           DKIA+EQE C QGKSK
Sbjct: 235 DKIAQEQELCIQGKSK 250


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  323 bits (827), Expect = 7e-86
 Identities = 173/257 (67%), Positives = 187/257 (72%), Gaps = 5/257 (1%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTD----LETNPYNNSPIMWRNIVKQFSSRTPQKLLLNCKNRTY 313
           MSSTKTPISLTIK NQFTD    L+ NPY+NSPIMWRNI+KQ SSRTPQKLL + KNRTY
Sbjct: 1   MSSTKTPISLTIKLNQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRTY 60

Query: 314 SFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPLLYAMKNQD 493
           SFLG+GQDSIFKD T+ RS I +SCS+     MGFQN GE+LPGDEFLSRPL+    N +
Sbjct: 61  SFLGFGQDSIFKDNTKFRSLIPISCSNI---VMGFQNLGEYLPGDEFLSRPLIKNQVNNN 117

Query: 494 FC-RKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXXXXXXXXXXXXXMLT 670
           FC RK+Y                D   VSVV EV                       MLT
Sbjct: 118 FCCRKSYASVAEAVAVSSTDAEED---VSVVDEVHELLTELKKEEKKQFAFRRRKQRMLT 174

Query: 671 SGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPL 850
           SGMGHRKY +LKRRQVKVETEAWEQAAKEY+ELLFDMCEQKLAPNLPYVKSLFLGWFEPL
Sbjct: 175 SGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPL 234

Query: 851 RDKIAEEQEFCSQGKSK 901
           RDKIAEEQE CSQGKSK
Sbjct: 235 RDKIAEEQELCSQGKSK 251


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score =  323 bits (827), Expect = 7e-86
 Identities = 173/257 (67%), Positives = 187/257 (72%), Gaps = 5/257 (1%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTD----LETNPYNNSPIMWRNIVKQFSSRTPQKLLLNCKNRTY 313
           MSSTKTPISLTIK NQFTD    L+ NPY+NSPIMWRNI+KQ SSRTPQKLL + KNRTY
Sbjct: 1   MSSTKTPISLTIKLNQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRTY 60

Query: 314 SFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPLLYAMKNQD 493
           SFLG+GQDSIFKD T+ RS I +SCS+     MGFQN GE+LPGDEFLSRPL+    N +
Sbjct: 61  SFLGFGQDSIFKDNTKFRSLIPISCSNI---VMGFQNLGEYLPGDEFLSRPLIKNQVNNN 117

Query: 494 FC-RKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXXXXXXXXXXXXXMLT 670
           FC RK+Y                D   VSVV EV                       MLT
Sbjct: 118 FCCRKSYASVAEAVAVSSTDAEED---VSVVDEVHELLTELKKEEKKQFAFRRRKQRMLT 174

Query: 671 SGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPL 850
           SGMGHRKY +LKRRQVKVETEAWEQAAKEY+ELLFDMCEQKLAPNLPYVKSLFLGWFEPL
Sbjct: 175 SGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPL 234

Query: 851 RDKIAEEQEFCSQGKSK 901
           RDKIAEEQE CSQGKSK
Sbjct: 235 RDKIAEEQELCSQGKSK 251


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score =  319 bits (817), Expect = 1e-84
 Identities = 174/258 (67%), Positives = 187/258 (72%), Gaps = 6/258 (2%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTD----LETNPYNNSPIMWRNIVKQFSSRTPQKLLLNCKNRTY 313
           MSSTKTPISLTIK NQFTD    L+ N Y+NSPIMWRNI+KQ SSRTPQKLL + KNRTY
Sbjct: 1   MSSTKTPISLTIKLNQFTDKPTGLDINRYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRTY 60

Query: 314 SFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPLLYAMKNQ- 490
           SFLG+GQDS+FKD T+ RS I +SCS+     MGFQN GE+LPGDEFLSRPLL    N  
Sbjct: 61  SFLGFGQDSVFKDNTKFRSLIPISCSNI---VMGFQNLGEYLPGDEFLSRPLLKNQVNSN 117

Query: 491 DFC-RKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXXXXXXXXXXXXXML 667
           DFC RK+Y                D   VSVV EVQ                      ML
Sbjct: 118 DFCCRKSYASVAEAVAVSSTDAEED---VSVVDEVQELLTELKKEEKKQFAFRRRKQRML 174

Query: 668 TSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEP 847
           TSGMGHRKY +LKRRQVKVETEAWEQAAKEY+ELLFDMCEQKLAPNLPYVKSLFLGWFEP
Sbjct: 175 TSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEP 234

Query: 848 LRDKIAEEQEFCSQGKSK 901
           LRDKIAEEQE CSQGKSK
Sbjct: 235 LRDKIAEEQELCSQGKSK 252


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score =  195 bits (495), Expect = 2e-47
 Identities = 115/268 (42%), Positives = 143/268 (53%), Gaps = 16/268 (5%)
 Frame = +2

Query: 146 MSSTKTPI---------SLTIKFNQFTDLETNPYNNSPIMWRNIVKQFSSRTPQKLLL-- 292
           MSS KTPI          L I F + T+   NP     +MWRNI K+   R P+K +   
Sbjct: 1   MSSGKTPILSANLGRDLDLIISFEKPTNFRPNPLKKPTVMWRNIAKRAIPRAPRKCVYLD 60

Query: 293 -NCKNRTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPL 469
               +R YSFLG+ QD IF +  +  +F   SCSS+GF EMGF+  GE    ++ + RP 
Sbjct: 61  SQPLSRRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAVGRPS 120

Query: 470 LYAMKNQ----DFCRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXXXXX 637
              ++NQ     FC K+Y                   DVS   E+Q              
Sbjct: 121 FGCLRNQMGFSGFCPKSYASVAEAVSSTDVEE-----DVSASDEIQELLGEMKKEEKRQV 175

Query: 638 XXXXXXXXMLTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYV 817
                    +  GM   +Y  L+RRQVK+ETEAWE AAKEY+ELL DMCEQKLAPNLPY+
Sbjct: 176 NFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYM 235

Query: 818 KSLFLGWFEPLRDKIAEEQEFCSQGKSK 901
           KSLFLGWFEPLRD I +EQE C  GK+K
Sbjct: 236 KSLFLGWFEPLRDAIVKEQELCRLGKNK 263


>gb|EOY03847.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1100

 Score =  178 bits (451), Expect = 3e-42
 Identities = 114/266 (42%), Positives = 142/266 (53%), Gaps = 16/266 (6%)
 Frame = +2

Query: 146 MSSTKTPI---SLTIKFNQFTDLET-NP---YNNSP----IMWRNIVKQFSSRTPQKLLL 292
           MS  +TP+   +L  KF+ F  L+  NP   Y N P    +MWRNI K   SR       
Sbjct: 1   MSIIETPLISSNLLDKFDHFVPLDNRNPSILYQNPPKISIVMWRNIAKHAISRRTHSF-- 58

Query: 293 NCKNRTYSFLGYGQDSIFKDKTRLRSFISVS-CSSNGFPEMGFQNHGEFLPGDEFLSRPL 469
            C  RTYSFLG  QDSIF +K++ R     S CS++ F +MG +  GE L   E++ +  
Sbjct: 59  QCFARTYSFLGTSQDSIFHEKSKFRGLKFGSFCSNSRFLDMGGRRIGEVLTNVEYIGKQS 118

Query: 470 LYAMKNQ----DFCRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXXXXX 637
             + +N+      C + Y                   DVSVV E++              
Sbjct: 119 FGSPRNEIGCSGLCPRGYVSVAEAVSSTDVEE-----DVSVVEEIKELLDEMKKEQRRET 173

Query: 638 XXXXXXXXMLTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYV 817
                   ++  GMG  KY  L+RRQVK+ETEAWEQAAKEYRELL DMCE KLAPNLPY+
Sbjct: 174 GNRRRRCQIIERGMGESKYRFLRRRQVKIETEAWEQAAKEYRELLMDMCEHKLAPNLPYI 233

Query: 818 KSLFLGWFEPLRDKIAEEQEFCSQGK 895
           KSLFLGWFEPLRD I +EQE    GK
Sbjct: 234 KSLFLGWFEPLRDAIIKEQELYRLGK 259


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  172 bits (435), Expect = 2e-40
 Identities = 107/263 (40%), Positives = 140/263 (53%), Gaps = 11/263 (4%)
 Frame = +2

Query: 146 MSSTKTP-----ISLTIKFNQFTDLETNPYNNSPIMWRNIVKQFSSRTPQKLLLNCKN-- 304
           MS ++TP     IS    F+       NP   S  +WRN  KQ  SR  Q+  +N ++  
Sbjct: 1   MSRSQTPLSPANISKNFTFHSPLIFHKNPSMISTTVWRNFAKQAISRK-QRFHINSQSFS 59

Query: 305 RTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPLLYAMK 484
           R YS LG  Q+S+F      + F   SCSS  F E+GF+  G     ++ + +P  ++++
Sbjct: 60  RAYSLLGICQESVFPGN--FKPFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSFWSVR 117

Query: 485 N----QDFCRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXXXXXXXXXX 652
           N      FC K Y                   +VSVV EVQ                   
Sbjct: 118 NPIWFNGFCPKGYASVAEAVSSTDVEE-----EVSVVDEVQELLQQMSIEEKREAQYKQR 172

Query: 653 XXXMLTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFL 832
                  GMG  KY+ LKRRQ+K+ETEAWE+AAKEYREL+ DMCEQKLAPNLPY+KSLFL
Sbjct: 173 TRQNRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFL 232

Query: 833 GWFEPLRDKIAEEQEFCSQGKSK 901
           GWFEPLR+ I +EQ+ C +GK+K
Sbjct: 233 GWFEPLRNAIDKEQDLCRKGKNK 255


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533046|gb|ESR44229.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score =  167 bits (423), Expect = 5e-39
 Identities = 112/272 (41%), Positives = 137/272 (50%), Gaps = 20/272 (7%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTDLET-----NPYNN-------------SPIMWRNIVKQFSSR 271
           MS+ KTPI  +   N+F  L       N YNN             S +MWRN+ KQ  S 
Sbjct: 1   MSNNKTPIFFSA--NKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58

Query: 272 TPQKLLLNCKNRTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDE 451
             +K      +R YSFLG  QDSI ++K +   F  +     G  E+G    GE L  ++
Sbjct: 59  HLKKPF----SRAYSFLGISQDSILREKVK---FGCLDMVPRGIHEVGSGRIGEILNHED 111

Query: 452 FLSRPLLYAMKNQDF-CRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXX 628
           ++ R     +KN +F C + Y                   DVS+V E+Q           
Sbjct: 112 YMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEE-----DVSIVEEIQELLQEMKKEEQ 166

Query: 629 XXXXXXXXXXXM-LTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPN 805
                        +  GMG  KY  LK RQVK+ETEAWEQAA EYRELL DMCEQKLAPN
Sbjct: 167 REGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPN 226

Query: 806 LPYVKSLFLGWFEPLRDKIAEEQEFCSQGKSK 901
           LPY+KSLFLGWFEPLRD IA+EQE C   K K
Sbjct: 227 LPYMKSLFLGWFEPLRDAIAKEQERCRMAKHK 258


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533045|gb|ESR44228.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score =  167 bits (423), Expect = 5e-39
 Identities = 112/272 (41%), Positives = 137/272 (50%), Gaps = 20/272 (7%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTDLET-----NPYNN-------------SPIMWRNIVKQFSSR 271
           MS+ KTPI  +   N+F  L       N YNN             S +MWRN+ KQ  S 
Sbjct: 1   MSNNKTPIFFSA--NKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58

Query: 272 TPQKLLLNCKNRTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDE 451
             +K      +R YSFLG  QDSI ++K +   F  +     G  E+G    GE L  ++
Sbjct: 59  HLKKPF----SRAYSFLGISQDSILREKVK---FGCLDMVPRGIHEVGSGRIGEILNHED 111

Query: 452 FLSRPLLYAMKNQDF-CRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXX 628
           ++ R     +KN +F C + Y                   DVS+V E+Q           
Sbjct: 112 YMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEE-----DVSIVEEIQELLQEMKKEEQ 166

Query: 629 XXXXXXXXXXXM-LTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPN 805
                        +  GMG  KY  LK RQVK+ETEAWEQAA EYRELL DMCEQKLAPN
Sbjct: 167 REGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPN 226

Query: 806 LPYVKSLFLGWFEPLRDKIAEEQEFCSQGKSK 901
           LPY+KSLFLGWFEPLRD IA+EQE C   K K
Sbjct: 227 LPYMKSLFLGWFEPLRDAIAKEQERCRMAKHK 258


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533044|gb|ESR44227.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score =  167 bits (423), Expect = 5e-39
 Identities = 112/272 (41%), Positives = 137/272 (50%), Gaps = 20/272 (7%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTDLET-----NPYNN-------------SPIMWRNIVKQFSSR 271
           MS+ KTPI  +   N+F  L       N YNN             S +MWRN+ KQ  S 
Sbjct: 1   MSNNKTPIFFSA--NKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58

Query: 272 TPQKLLLNCKNRTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDE 451
             +K      +R YSFLG  QDSI ++K +   F  +     G  E+G    GE L  ++
Sbjct: 59  HLKKPF----SRAYSFLGISQDSILREKVK---FGCLDMVPRGIHEVGSGRIGEILNHED 111

Query: 452 FLSRPLLYAMKNQDF-CRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXX 628
           ++ R     +KN +F C + Y                   DVS+V E+Q           
Sbjct: 112 YMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEE-----DVSIVEEIQELLQEMKKEEQ 166

Query: 629 XXXXXXXXXXXM-LTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPN 805
                        +  GMG  KY  LK RQVK+ETEAWEQAA EYRELL DMCEQKLAPN
Sbjct: 167 REGENGGGRNRRRVARGMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPN 226

Query: 806 LPYVKSLFLGWFEPLRDKIAEEQEFCSQGKSK 901
           LPY+KSLFLGWFEPLRD IA+EQE C   K K
Sbjct: 227 LPYMKSLFLGWFEPLRDAIAKEQERCRMAKHK 258


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score =  166 bits (420), Expect = 1e-38
 Identities = 111/271 (40%), Positives = 137/271 (50%), Gaps = 19/271 (7%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTDLET-----NPYNN-------------SPIMWRNIVKQFSSR 271
           MS+ KTPI  +   N+F  L       N YNN             S +MWRN+ KQ  S 
Sbjct: 1   MSNNKTPIFFSA--NKFDHLPVCYYNHNNYNNNKPTIRFPSPEKISSVMWRNVAKQAISL 58

Query: 272 TPQKLLLNCKNRTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDE 451
             +K      +R YSFLG  QDSI ++K +   F  +     G  E+G    GE L  ++
Sbjct: 59  HLKKPF----SRAYSFLGISQDSILREKVK---FGCLDMVPRGIHEVGSGRIGEILNHED 111

Query: 452 FLSRPLLYAMKNQDF-CRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXX 628
           ++ R     +KN +F C + Y                   DVS+V E+Q           
Sbjct: 112 YMGRTSFGVLKNDNFWCPRGYATVAEAVSSTDVEE-----DVSIVEEIQELLQEMKKEQQ 166

Query: 629 XXXXXXXXXXXMLTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNL 808
                       +  GMG  KY  LK RQVK+ETEAWE+AA EYRELL DMCEQKLAPNL
Sbjct: 167 SGGGRNRRR---VARGMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNL 223

Query: 809 PYVKSLFLGWFEPLRDKIAEEQEFCSQGKSK 901
           PY+KSLFLGWFEPLRD IA+EQE C   K K
Sbjct: 224 PYMKSLFLGWFEPLRDAIAKEQERCRMAKHK 254


>gb|ABD96891.1| hypothetical protein [Cleome spinosa]
          Length = 1021

 Score =  160 bits (405), Expect = 6e-37
 Identities = 97/230 (42%), Positives = 123/230 (53%)
 Frame = +2

Query: 212 NPYNNSPIMWRNIVKQFSSRTPQKLLLNCKNRTYSFLGYGQDSIFKDKTRLRSFISVSCS 391
           NP   S  MWRNI KQ  SR+P +L +  ++R    LG+  +SIF +    R  +    S
Sbjct: 32  NPVVQSSAMWRNIAKQTISRSPVRLSVCRQSR--GLLGFSSESIFPEIFIFRPSVIGPIS 89

Query: 392 SNGFPEMGFQNHGEFLPGDEFLSRPLLYAMKNQDFCRKNYXXXXXXXXXXXXXXXXDTTD 571
           S+GF +MG+    E     +F  RP    +K++  C   +                   D
Sbjct: 90  SSGFHDMGYSRTCEIPAPGDFSGRPGFGFLKDE-CCFHRFSPRSYVNAAEAVSSTDIEED 148

Query: 572 VSVVGEVQXXXXXXXXXXXXXXXXXXXXXXMLTSGMGHRKYNSLKRRQVKVETEAWEQAA 751
            SVV EVQ                          GM  +KY SLKRRQVK+ETEAWE+AA
Sbjct: 149 ASVVDEVQELLREMKKEEKKEKVHLRRVKRQEDLGMLEKKYQSLKRRQVKIETEAWEKAA 208

Query: 752 KEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQEFCSQGKSK 901
            EY+ELL DMCEQKLAPNLPYVKSLFLGWFEPLR+ IA++QE    GK++
Sbjct: 209 NEYKELLTDMCEQKLAPNLPYVKSLFLGWFEPLREAIAKDQELYRLGKNR 258


>ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Populus trichocarpa]
           gi|550340797|gb|ERP62048.1| hypothetical protein
           POPTR_0004s11060g [Populus trichocarpa]
          Length = 475

 Score =  156 bits (395), Expect = 9e-36
 Identities = 101/265 (38%), Positives = 135/265 (50%), Gaps = 13/265 (4%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTDLETNP-----YNNSP--IMWRNIVKQFSSRTPQKLLLNCKN 304
           MSS    I  T K +     +  P      N+ P  +MWRN+ KQ   + PQ   LN  +
Sbjct: 1   MSSANPHIFSTKKIDPLIAFDKKPSILSLINSKPSTVMWRNVAKQAILK-PQSKSLNFPS 59

Query: 305 --RTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPLLYA 478
             RT+SFLG  Q+ IF +K++  S       +N  P++ F+  GE    ++++ +P    
Sbjct: 60  FPRTHSFLGAPQEPIFFEKSKFHSV------NNSSPQLCFRRIGEISTHEDYMGKPSFGF 113

Query: 479 MKNQDFCRKNYXXXXXXXXXXXXXXXXDTTDVS----VVGEVQXXXXXXXXXXXXXXXXX 646
           ++N D    N                  +TDV     V  E+Q                 
Sbjct: 114 LRNGDSSNGNLCSGLCPRGYVSVAEAVSSTDVEDNVVVDEELQELLQDTRKEEEKEKDFR 173

Query: 647 XXXXXMLTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYVKSL 826
                    GMG  KY +L+RRQVK+E EAWEQAAKEY+ELL DMCE KLAPNLPY+K L
Sbjct: 174 RRRRLHANRGMGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGL 233

Query: 827 FLGWFEPLRDKIAEEQEFCSQGKSK 901
           FLGWFEPLRD IA+EQE   +GK++
Sbjct: 234 FLGWFEPLRDAIAKEQESIRRGKTR 258


>emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 1036

 Score =  155 bits (392), Expect = 2e-35
 Identities = 96/237 (40%), Positives = 121/237 (51%), Gaps = 7/237 (2%)
 Frame = +2

Query: 212 NPYNNSPIMWRNIVKQFSSRTPQKLLLNCK-NRTYSFLGYGQDSIFKDKTRLRSFISVSC 388
           NP  +S IMWRN  KQ  SRTP   L     +R+YSFLG   D  F D+ + R F    C
Sbjct: 33  NPCFDSTIMWRNFAKQAISRTPNLCLRKFSISRSYSFLGGTHDCGFSDRLKFRPFELGFC 92

Query: 389 SSNGFPEMGFQNHGEFLPGDEFLSRPLLYAMKNQDFCRKNYXXXXXXXXXXXXXXXXDTT 568
            +  F E+GF   G  L  +    RP+   + N    R N+                D++
Sbjct: 93  KNRSFSEVGFCREGGSLVKEGIGERPVSGCLGN----RLNFNVVCPKGYASVVEAEVDSS 148

Query: 569 -----DVSVVGEVQXXXXXXXXXXXXXXXXXXXXXXM-LTSGMGHRKYNSLKRRQVKVET 730
                DVSV  E+Q                        + +GM   KY  L+ RQ+K+ET
Sbjct: 149 TDLEDDVSVFDEIQELVEEMRKEEKRAKWRESHQRQQKMVAGMPLYKYQKLRNRQIKLET 208

Query: 731 EAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQEFCSQGKSK 901
           E+W+QAA EY+ELL DMC+ KLAPNLPYVKSLFLGWFEP RD I E+QE   QGK +
Sbjct: 209 ESWQQAANEYKELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIEDQELIRQGKCR 265


>ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
           gi|223526525|gb|EEF28787.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 395

 Score =  152 bits (383), Expect = 2e-34
 Identities = 97/236 (41%), Positives = 120/236 (50%), Gaps = 14/236 (5%)
 Frame = +2

Query: 236 MWRNIVKQFSSRTPQKLLLNCK-NRTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEM 412
           MWRN+ KQ  SR   K L +   + TYSFLG  Q+  F DK +L    +  CSS     +
Sbjct: 1   MWRNVAKQTISRAQSKSLSSHPLSSTYSFLGLSQEPSFTDKCKLSPLYA--CSSL----V 54

Query: 413 GFQNHGEFLPGDEFLSRPLLYAMKNQD-------------FCRKNYXXXXXXXXXXXXXX 553
           GF   GE +P ++F+ +P    + N+D              C   Y              
Sbjct: 55  GFCRLGEIVPYEDFMGKPGFGLVGNKDNSNSSHMSMCNGYLCSGFYPRGYVSVAEAVSSS 114

Query: 554 XXDTTDVSVVGEVQXXXXXXXXXXXXXXXXXXXXXXMLTSGMGHRKYNSLKRRQVKVETE 733
                DVSVV EVQ                          GMG +KY  LK+RQVK+ETE
Sbjct: 115 TDVEEDVSVVEEVQELLQEMRREEAREKELIRRKER----GMGSKKYQMLKKRQVKIETE 170

Query: 734 AWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQEFCSQGKSK 901
           AWE A KEY+ELL DMCE+KLAPNLPY+KSLFLGWFEP RD I +EQE    GK++
Sbjct: 171 AWEWAVKEYKELLMDMCEKKLAPNLPYMKSLFLGWFEPFRDAILKEQELIRVGKNR 226


>ref|XP_006373532.1| hypothetical protein POPTR_0017s14590g [Populus trichocarpa]
           gi|550320354|gb|ERP51329.1| hypothetical protein
           POPTR_0017s14590g [Populus trichocarpa]
          Length = 987

 Score =  147 bits (371), Expect = 5e-33
 Identities = 87/225 (38%), Positives = 115/225 (51%), Gaps = 3/225 (1%)
 Frame = +2

Query: 236 MWRNIVKQFSSRTPQKLL-LNCKNRTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEM 412
           MWRN+ KQ + ++  K L      RTYSFLG  ++ IF +K +  S       +N  P +
Sbjct: 1   MWRNVAKQATLKSQSKSLNFPSFPRTYSFLGASKEPIFFEKLKFHSL------NNTSPRL 54

Query: 413 GFQNHGEFLPGDEFLSRPLLYAMKNQDFCRKNYXXXXXXXXXXXXXXXXDTTDV--SVVG 586
            F+  GE    ++F+ +P    ++N D    N                  +TDV  +V G
Sbjct: 55  SFRAIGEISTHEDFMGKPRFIFLRNSDSTNGNRCAGFCPRGYVSVVEAVSSTDVEDNVYG 114

Query: 587 EVQXXXXXXXXXXXXXXXXXXXXXXMLTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRE 766
             +                          G+G RK+  L+RRQVK+E EAWE A KEY+E
Sbjct: 115 ADEVQELLPEMRKEEEKEEHFRRRLHANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKE 174

Query: 767 LLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQEFCSQGKSK 901
           LL DMCE KLAPNLPY+KSLFLGWFEP  D IA+EQE    GKS+
Sbjct: 175 LLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIAKEQELIRTGKSR 219


>ref|XP_006400090.1| hypothetical protein EUTSA_v10012544mg [Eutrema salsugineum]
           gi|557101180|gb|ESQ41543.1| hypothetical protein
           EUTSA_v10012544mg [Eutrema salsugineum]
          Length = 1030

 Score =  147 bits (370), Expect = 7e-33
 Identities = 105/265 (39%), Positives = 127/265 (47%), Gaps = 13/265 (4%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTDLET---------NPYNNSPIMWRNIVKQFSSRTPQKLLLNC 298
           MSS +TP+ L  +   F  L           NP   S  MWR+I KQ  SR+ Q   L  
Sbjct: 1   MSSAQTPVFLANQSKVFDHLIPFHKPLISCRNPVPQSFPMWRSIAKQAISRS-QAARLAV 59

Query: 299 KNRTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPLLYA 478
            ++T  FL   Q+S    K R R  +  S S +G  EMGF         +E   R  L  
Sbjct: 60  GSQTRGFLASSQESSLSKKLRFRCSVFGSFSDSGCHEMGFSRLSGVTRPEELPGRVGLRF 119

Query: 479 MKNQDFCRKNYXXXXXXXXXXXXXXXXDTTDV----SVVGEVQXXXXXXXXXXXXXXXXX 646
            KN  +   ++                 +TDV    SVV EVQ                 
Sbjct: 120 SKNDSYFNGSFARRYTSVAEEI-----SSTDVEEEPSVVDEVQELLKEMKKEQKREDHRS 174

Query: 647 XXXXXMLTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYVKSL 826
                    GMG  KY +L RRQVK+ETE WE+AA EYRELL DMCE+KLAPNLPYVKSL
Sbjct: 175 WRMKKQEHVGMGRGKYRNLWRRQVKIETEEWERAANEYRELLTDMCEKKLAPNLPYVKSL 234

Query: 827 FLGWFEPLRDKIAEEQEFCSQGKSK 901
            L WFEP+RD IA++QE    GKSK
Sbjct: 235 LLDWFEPVRDVIAKDQELYRLGKSK 259


>ref|XP_006289882.1| hypothetical protein CARUB_v10003497mg [Capsella rubella]
           gi|482558588|gb|EOA22780.1| hypothetical protein
           CARUB_v10003497mg [Capsella rubella]
          Length = 1014

 Score =  140 bits (354), Expect = 5e-31
 Identities = 101/261 (38%), Positives = 121/261 (46%), Gaps = 9/261 (3%)
 Frame = +2

Query: 146 MSSTKTPISLTIKFNQFTDL---------ETNPYNNSPIMWRNIVKQFSSRTPQKLLLNC 298
           MSST TP+ L      F  L           NP + S  MWRNI KQ   R+  +L  N 
Sbjct: 1   MSSTHTPVLLANHSKVFDHLIPLHKPLISSPNPVSQSFPMWRNIAKQAILRSAARL--NV 58

Query: 299 KNRTYSFLGYGQDSIFKDKTRLRSFISVSCSSNGFPEMGFQNHGEFLPGDEFLSRPLLYA 478
            + T   LG  Q+S+F      R  +  S S +   EMG ++       +EF        
Sbjct: 59  GSHT---LGISQESVFSKNLSFRCSVLGSISGSPCHEMGVRHLSGITRREEF-------- 107

Query: 479 MKNQDFCRKNYXXXXXXXXXXXXXXXXDTTDVSVVGEVQXXXXXXXXXXXXXXXXXXXXX 658
                F  +                   +TDV    EV                      
Sbjct: 108 -----FNNERGLNGTLARGFTSVAEEVLSTDVEEEPEVDELLKEMKKEKKRESHRSWRMK 162

Query: 659 XMLTSGMGHRKYNSLKRRQVKVETEAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGW 838
                GMG  K+ +L RRQVK+ETE WE+AA EYRELL DMCE+KLAPNLPYVKSLFLGW
Sbjct: 163 KQEHLGMGRTKFQNLWRRQVKIETEEWERAAAEYRELLTDMCERKLAPNLPYVKSLFLGW 222

Query: 839 FEPLRDKIAEEQEFCSQGKSK 901
           FEPLRD IA+EQE  S GKSK
Sbjct: 223 FEPLRDAIAKEQEMYSLGKSK 243


>gb|EOY01555.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 932

 Score =  136 bits (342), Expect = 1e-29
 Identities = 89/232 (38%), Positives = 118/232 (50%), Gaps = 14/232 (6%)
 Frame = +2

Query: 236 MWRNIVKQFSSRTPQKLLLN---CKNRTYSFLGYGQDSIFKDKTRL---RSFISVSCSSN 397
           MWR++VKQ + R   K +     C   + S  G+ QDS+F +K R    R+     C   
Sbjct: 1   MWRSLVKQAAYREKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFP 60

Query: 398 GFPEMGF-----QNHGEFL---PGDEFLSRPLLYAMKNQDFCRKNYXXXXXXXXXXXXXX 553
           GF ++G       + G+F    PGD     PL ++ K  +   K Y              
Sbjct: 61  GFRQIGVFSSQKDDLGKFSLNQPGD-----PLRFSGKFWNL--KGYASAAEAVI------ 107

Query: 554 XXDTTDVSVVGEVQXXXXXXXXXXXXXXXXXXXXXXMLTSGMGHRKYNSLKRRQVKVETE 733
              +T+  + G  +                       +  GMG  KYN+LK+RQ+K+ETE
Sbjct: 108 ---STEEDMSGSEEIHELMEAMAREEKKMSFLVQPKKVAEGMGVAKYNTLKKRQIKIETE 164

Query: 734 AWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQEFCSQ 889
           AWE+AAKEY+ELL DMCE KLAPNLPY+KSLFLGWFEPLRD I  EQE C +
Sbjct: 165 AWEEAAKEYQELLMDMCEHKLAPNLPYIKSLFLGWFEPLRDSIVGEQELCKE 216