BLASTX nr result
ID: Atropa21_contig00012878
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00012878
(459 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006343364.1| PREDICTED: cold shock domain-containing prot... 86 5e-15
ref|XP_004234533.1| PREDICTED: cold shock protein 1-like [Solanu... 86 5e-15
ref|XP_006340741.1| PREDICTED: cold shock domain-containing prot... 69 6e-10
ref|XP_004232496.1| PREDICTED: DNA-binding protein HEXBP-like [S... 64 2e-08
ref|XP_004509364.1| PREDICTED: cold shock protein 1-like [Cicer ... 57 3e-06
gb|ESW28153.1| hypothetical protein PHAVU_003G263300g [Phaseolus... 56 4e-06
ref|XP_003637458.1| Transcription elongation factor SPT6 [Medica... 55 1e-05
>ref|XP_006343364.1| PREDICTED: cold shock domain-containing protein 3-like [Solanum
tuberosum]
Length = 300
Score = 85.9 bits (211), Expect = 5e-15
Identities = 48/107 (44%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = -1
Query: 411 CYTCGMTGHIARDCXXXXXXXXXXXXXXXXXXXXXXGHMAKDCDRXXXXXXXXXXXXXXX 232
CYTCGMTGHIARDC H+A+DCDR
Sbjct: 146 CYTCGMTGHIARDCVGSGGGGAGSGGGACYTCGMTG-HIARDCDRSGGGGGGGAGSGGCY 204
Query: 231 XXXXXGHLARDCPSERLXXXXXXXXXG-ACYNCGLPGHLARDCSSES 94
GH+ARDCPSER ACYNCGLPGHLARDCS ES
Sbjct: 205 NCGGLGHMARDCPSERRGGGGGAGGGSGACYNCGLPGHLARDCSRES 251
>ref|XP_004234533.1| PREDICTED: cold shock protein 1-like [Solanum lycopersicum]
Length = 288
Score = 85.9 bits (211), Expect = 5e-15
Identities = 48/107 (44%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = -1
Query: 411 CYTCGMTGHIARDCXXXXXXXXXXXXXXXXXXXXXXGHMAKDCDRXXXXXXXXXXXXXXX 232
CYTCGMTGHIARDC H+A+DCDR
Sbjct: 141 CYTCGMTGHIARDCVGVGGGAGSGGGACYTCGMTG--HIARDCDRSGGGGGGGAGSGGCY 198
Query: 231 XXXXXGHLARDCPSERLXXXXXXXXXG-ACYNCGLPGHLARDCSSES 94
GH+ARDCPSER ACYNCGLPGHLARDCS ES
Sbjct: 199 NCGGLGHMARDCPSERRGGGSGAGGGSGACYNCGLPGHLARDCSRES 245
Score = 60.8 bits (146), Expect = 2e-07
Identities = 41/117 (35%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Frame = -1
Query: 411 CYTCGMTGHIARDCXXXXXXXXXXXXXXXXXXXXXXGHMAKDC--DRXXXXXXXXXXXXX 238
CYTCGMTGHIARDC GHMA+DC +R
Sbjct: 168 CYTCGMTGHIARDCDRSGGGGGGGAGSGGCYNCGGLGHMARDCPSERRGGGSGAGGGSGA 227
Query: 237 XXXXXXXGHLARDCPSE-----RLXXXXXXXXXGA------CYNCGLPGHLARDCSS 100
GHLARDC E R + CYNCG GH AR+C+S
Sbjct: 228 CYNCGLPGHLARDCSRESGGGDRFGRSSGDRFGRSSGGGSKCYNCGETGHFARECTS 284
>ref|XP_006340741.1| PREDICTED: cold shock domain-containing protein 3-like [Solanum
tuberosum]
Length = 261
Score = 68.9 bits (167), Expect = 6e-10
Identities = 38/102 (37%), Positives = 42/102 (41%)
Frame = -1
Query: 411 CYTCGMTGHIARDCXXXXXXXXXXXXXXXXXXXXXXGHMAKDCDRXXXXXXXXXXXXXXX 232
CY CG TGH+ARDC H+A+DCDR
Sbjct: 120 CYNCGRTGHLARDCDRNSGGGGGGRGGCYNCGAAG--HLARDCDRSSGGGGGGASDGVCY 177
Query: 231 XXXXXGHLARDCPSERLXXXXXXXXXGACYNCGLPGHLARDC 106
GH+ARDCPS GACY CG GHLARDC
Sbjct: 178 TCGGYGHMARDCPSAGRVGGRGGGGGGACYTCGAQGHLARDC 219
Score = 58.5 bits (140), Expect = 9e-07
Identities = 36/113 (31%), Positives = 41/113 (36%), Gaps = 7/113 (6%)
Frame = -1
Query: 411 CYTCGMTGHIARDCXXXXXXXXXXXXXXXXXXXXXXGHMAKDC-DRXXXXXXXXXXXXXX 235
CY CG GH+ARDC GHMA+DC
Sbjct: 147 CYNCGAAGHLARDCDRSSGGGGGGASDGVCYTCGGYGHMARDCPSAGRVGGRGGGGGGAC 206
Query: 234 XXXXXXGHLARDCPS------ERLXXXXXXXXXGACYNCGLPGHLARDCSSES 94
GHLARDCP CYNCG GH AR+C+S+S
Sbjct: 207 YTCGAQGHLARDCPGGGGGGGSNFGRSGGGSGGSKCYNCGEAGHFARECTSQS 259
>ref|XP_004232496.1| PREDICTED: DNA-binding protein HEXBP-like [Solanum lycopersicum]
Length = 260
Score = 64.3 bits (155), Expect = 2e-08
Identities = 38/104 (36%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Frame = -1
Query: 411 CYTCGMTGHIARDCXXXXXXXXXXXXXXXXXXXXXXGHMAKDCDRXXXXXXXXXXXXXXX 232
CY CG TGH+ARDC H+A+DCDR
Sbjct: 120 CYNCGRTGHLARDCDRNSGGGGGGRGGCYNCGAAG--HLARDCDRSSGGGGGGGGASGGV 177
Query: 231 XXXXXG--HLARDCPSERLXXXXXXXXXGACYNCGLPGHLARDC 106
G H+ARDCPS GACY+CG GHLARDC
Sbjct: 178 CYTCGGYGHMARDCPSAGRVGGRGGGGSGACYSCGAQGHLARDC 221
>ref|XP_004509364.1| PREDICTED: cold shock protein 1-like [Cicer arietinum]
Length = 260
Score = 57.0 bits (136), Expect = 3e-06
Identities = 36/108 (33%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = -1
Query: 411 CYTCGMTGHIARDCXXXXXXXXXXXXXXXXXXXXXXGHMAKDCDRXXXXXXXXXXXXXXX 232
CY CG TGHIAR+C GH+A+DC R
Sbjct: 114 CYNCGDTGHIARECNRSNNSGGGGGGGGACYTCGAFGHIARDCMRGGNNGGGIGGGIGGT 173
Query: 231 XXXXXG---HLARDCPSERLXXXXXXXXXGACYNCGLPGHLARDCSSE 97
G H+ARDC + R+ CY CG GH+ARDCS E
Sbjct: 174 SCYRCGGIGHIARDCATARVGSGGG-----GCYKCGEVGHIARDCSIE 216
>gb|ESW28153.1| hypothetical protein PHAVU_003G263300g [Phaseolus vulgaris]
Length = 247
Score = 56.2 bits (134), Expect = 4e-06
Identities = 33/105 (31%), Positives = 40/105 (38%)
Frame = -1
Query: 411 CYTCGMTGHIARDCXXXXXXXXXXXXXXXXXXXXXXGHMAKDCDRXXXXXXXXXXXXXXX 232
CY CG GH+ARDC H+A+DC R
Sbjct: 106 CYQCGDFGHLARDCNRSTNSGGGGGGGCFVCGGFG--HLARDCARGGNIGGGGGGSGSCF 163
Query: 231 XXXXXGHLARDCPSERLXXXXXXXXXGACYNCGLPGHLARDCSSE 97
GH+ARDC + + G C+ CG GHLARDC E
Sbjct: 164 RCGGFGHMARDCATAKSVGVGGGGSGGGCFRCGEVGHLARDCGIE 208
>ref|XP_003637458.1| Transcription elongation factor SPT6 [Medicago truncatula]
gi|355503393|gb|AES84596.1| Transcription elongation
factor SPT6 [Medicago truncatula]
Length = 2159
Score = 55.1 bits (131), Expect = 1e-05
Identities = 33/106 (31%), Positives = 43/106 (40%)
Frame = -1
Query: 411 CYTCGMTGHIARDCXXXXXXXXXXXXXXXXXXXXXXGHMAKDCDRXXXXXXXXXXXXXXX 232
CY CG +GH+ARDC GHMA++C +
Sbjct: 1490 CYKCGESGHMARDCTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGRGGGGTCYK 1549
Query: 231 XXXXXGHLARDCPSERLXXXXXXXXXGACYNCGLPGHLARDCSSES 94
H+AR+C E GACY CG GH+AR+C+ ES
Sbjct: 1550 CGESG-HMARECTQE--GGGGGGRGGGACYKCGESGHMARECTQES 1592