BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00012701
         (3144 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...  1742   0.0  
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme...  1224   0.0  
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              830   0.0  
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   825   0.0  
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme...   823   0.0  
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   790   0.0  
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   785   0.0  
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   785   0.0  
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   785   0.0  
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   783   0.0  
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   781   0.0  
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   758   0.0  
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   754   0.0  
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   753   0.0  
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   749   0.0  
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps...   739   0.0  
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   737   0.0  
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   731   0.0  
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   728   0.0  
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   719   0.0  

>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score = 1742 bits (4511), Expect = 0.0
 Identities = 877/1069 (82%), Positives = 924/1069 (86%), Gaps = 55/1069 (5%)
 Frame = +3

Query: 3    NKVRGILNTIGEECSLDILRKISKCEIRKTLGGFIVFMAKKYYGLETQQFYSQQ---QEV 173
            +KVR +L  IGEE SL ILR+ISKC+I+KTL GFIVFMAKKYY  ETQQFY +Q   + V
Sbjct: 36   DKVRRLLVAIGEERSLCILREISKCQIKKTLSGFIVFMAKKYYQSETQQFYQKQNYEEPV 95

Query: 174  ASAESFYHSPKIHRIXXXXXXXXXXXXXXXPRNTPIFQ-----GTGHDN----------- 305
             SAESFYHSP+I R                PRN PIFQ     G   D+           
Sbjct: 96   PSAESFYHSPQIRRSSLSSPNSSCSSVNFSPRNRPIFQDNDIVGDASDSPTSAPRIPSPP 155

Query: 306  ------------------------------------DIVGDVSDSPTSVPQIPSPPMSPA 377
                                                +IVGD SDSPTS P+IPSPPMSP 
Sbjct: 156  MSPVTTSFQRDHYDPRPSTFRDRASTRGISEQLLALNIVGDASDSPTSAPRIPSPPMSPV 215

Query: 378  TTSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLEDVIMLHD 557
            TTSFQR  YDP  S FRDRASTRGISEQLL LSKLEFRKFFLILNYIGRRK+EDVIMLHD
Sbjct: 216  TTSFQRDHYDPRPSTFRDRASTRGISEQLLALSKLEFRKFFLILNYIGRRKVEDVIMLHD 275

Query: 558  VGDILDLIYQPMSHFESYIWNKYGHHCEDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFKG 737
            VGDILD+IYQPMSHFESYIWNKYGH CE NKRVQYLDWDSGRTHLYHCHVH DGSYTFKG
Sbjct: 276  VGDILDMIYQPMSHFESYIWNKYGHLCEHNKRVQYLDWDSGRTHLYHCHVHSDGSYTFKG 335

Query: 738  PYLKAERTHLQQSLGDENVLIVKFEEKAPRCPEEIVQNGILVGLRRYRFFVYXXXXXXXX 917
            PYLKAERTHLQQSLGDENVLIVKFE+  P CPEEIVQNGILVGLRRYRFFVY        
Sbjct: 336  PYLKAERTHLQQSLGDENVLIVKFEQNTPGCPEEIVQNGILVGLRRYRFFVYKDDGKKRS 395

Query: 918  XXXXXXXIDAVKCYFVRMESLNPCEKETYILHDKIVHEARCHFMHVHMVSSMAKYMARFS 1097
                   ID+VKCYFVRMESLNP EKETYIL DK+VHEARC+FMHVHMVSSMAKYMARFS
Sbjct: 396  SKDKEEKIDSVKCYFVRMESLNPYEKETYILRDKMVHEARCNFMHVHMVSSMAKYMARFS 455

Query: 1098 LVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCP 1277
            L LSTTVKLQVDLNSVNI RIED+ CHDK+G  +YDEDGKPLIHTDGTGYISEDLAR+CP
Sbjct: 456  LTLSTTVKLQVDLNSVNIDRIEDICCHDKSGRIIYDEDGKPLIHTDGTGYISEDLARKCP 515

Query: 1278 QDFFNVKHKCANSERYPNGVKLGENSYELGEAEFQSVEPPLLMQCRLFYNGLAVKGTLLV 1457
            QDFFNVKH+CAN ERY NGVKLGENS ELGEAEFQS EPPLLMQCRLFYNGLAVKGTLLV
Sbjct: 516  QDFFNVKHRCANLERYTNGVKLGENSSELGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLV 575

Query: 1458 NRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGV 1637
            NRKLP+ TIQIRPSMIKVEADP+LSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGV
Sbjct: 576  NRKLPRRTIQIRPSMIKVEADPRLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGV 635

Query: 1638 PTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWCC 1817
            P EYF+DIL NTLEETQRLYSDEVTALKVAVNHRDRDDAS ATSMIMAGVPLTEPYLWCC
Sbjct: 636  PVEYFYDILNNTLEETQRLYSDEVTALKVAVNHRDRDDASTATSMIMAGVPLTEPYLWCC 695

Query: 1818 LSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPG 1997
            LSSLAKEERNGLKGGRLPI+DTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPG
Sbjct: 696  LSSLAKEERNGLKGGRLPIADTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPG 755

Query: 1998 LHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQL 2177
            LHFGDIHRLLAVPVK L DIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQL
Sbjct: 756  LHFGDIHRLLAVPVKNLGDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQL 815

Query: 2178 LKYYAANRPWSRLHSTPKTLHREPIDFSAEEREHELFQTFLETRMPNYSMADASANWYAL 2357
            LKY+ A+RPWSR+HSTPKTLHREP +FSAEEREH+LFQTFLETRMPNYSMADASANWYAL
Sbjct: 816  LKYFTASRPWSRIHSTPKTLHREPNNFSAEEREHDLFQTFLETRMPNYSMADASANWYAL 875

Query: 2358 MDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFL 2537
            MDRLLILGKN TTENEE+KSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFL
Sbjct: 876  MDRLLILGKNNTTENEEIKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFL 935

Query: 2538 QKKECYHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFEVEISETCLRLWEERYRKYRFE 2717
            QKKE YHSTSVLGEIYDRVE+FKAEEP AVEIK+LSAFEV I +TCLRLWEERYR YRFE
Sbjct: 936  QKKESYHSTSVLGEIYDRVEKFKAEEPAAVEIKKLSAFEVGIPDTCLRLWEERYRNYRFE 995

Query: 2718 MKEALNTSSESKNDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTYNYAKA 2897
            MKEALNTSSESKNDLA+QVI KYKQLLYEAPDME+S+RST+D+YN+ALAIY VTY+YAKA
Sbjct: 996  MKEALNTSSESKNDLADQVIKKYKQLLYEAPDMEESIRSTTDMYNDALAIYCVTYDYAKA 1055

Query: 2898 IGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKLLNLR 3044
            IGDV+KCGFAWKVAG+ALC+ HAELHAKEHNQKVMA+SPS+LHKLLNLR
Sbjct: 1056 IGDVRKCGFAWKVAGAALCKLHAELHAKEHNQKVMAMSPSILHKLLNLR 1104


>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 759

 Score = 1224 bits (3168), Expect = 0.0
 Identities = 611/726 (84%), Positives = 638/726 (87%), Gaps = 3/726 (0%)
 Frame = +3

Query: 9    VRGILNTIGEECSLDILRKISKCEIRKTLGGFIVFMAKKYYGLETQQFYSQQ---QEVAS 179
            VR +L  IGEE SL IL +ISKC+I+KTL GFIVFMAKKYY  ETQQFY +Q   Q V S
Sbjct: 38   VRRLLVAIGEERSLYILNEISKCQIKKTLSGFIVFMAKKYYQSETQQFYQKQNHEQPVLS 97

Query: 180  AESFYHSPKIHRIXXXXXXXXXXXXXXXPRNTPIFQGTGHDNDIVGDVSDSPTSVPQIPS 359
            AESFYHSP+I R                PRN PIFQ    D DIVGD SDSPTS P+IPS
Sbjct: 98   AESFYHSPQIRRNSLSSPNSSCSSVNFSPRNRPIFQ----DRDIVGDTSDSPTSGPRIPS 153

Query: 360  PPMSPATTSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLED 539
            PP+SP TTSFQ+  YDP  S+FRDRASTRGISEQLL L+KLEFRKFFLILNYIGRRK+ED
Sbjct: 154  PPLSPVTTSFQKCHYDPSPSKFRDRASTRGISEQLLALNKLEFRKFFLILNYIGRRKVED 213

Query: 540  VIMLHDVGDILDLIYQPMSHFESYIWNKYGHHCEDNKRVQYLDWDSGRTHLYHCHVHLDG 719
            VI LHDVGDILD+IYQPMSHFESYIWNKYGH CE NKRVQYLDWDSGRTHLYHCHVH D 
Sbjct: 214  VITLHDVGDILDMIYQPMSHFESYIWNKYGHLCEHNKRVQYLDWDSGRTHLYHCHVHSDR 273

Query: 720  SYTFKGPYLKAERTHLQQSLGDENVLIVKFEEKAPRCPEEIVQNGILVGLRRYRFFVYXX 899
            SYTFKGPYLKAERTHLQ SLGDENVLIVKFE+  P CPEEIVQNGILVGLRRYRFFVY  
Sbjct: 274  SYTFKGPYLKAERTHLQHSLGDENVLIVKFEQNTPGCPEEIVQNGILVGLRRYRFFVYKD 333

Query: 900  XXXXXXXXXXXXXIDAVKCYFVRMESLNPCEKETYILHDKIVHEARCHFMHVHMVSSMAK 1079
                         ID+VKCYFVRMESLNP E ETYILHDK+VHEARC+FMHVHMVSSMAK
Sbjct: 334  DGKKRRLKDKEEKIDSVKCYFVRMESLNPYENETYILHDKMVHEARCNFMHVHMVSSMAK 393

Query: 1080 YMARFSLVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISED 1259
            YMARFSL+LSTTVKLQVDLNSVNI RIED+YCHDK+G  +YDEDGKPLIHTDGTGYISED
Sbjct: 394  YMARFSLILSTTVKLQVDLNSVNIDRIEDIYCHDKSGRIIYDEDGKPLIHTDGTGYISED 453

Query: 1260 LARRCPQDFFNVKHKCANSERYPNGVKLGENSYELGEAEFQSVEPPLLMQCRLFYNGLAV 1439
            LAR+CPQDFFNVKHKCAN  RY NGVKLGENS ELGEAEFQS EPPLLMQCRLFYNGLAV
Sbjct: 454  LARKCPQDFFNVKHKCANLVRYANGVKLGENSSELGEAEFQSGEPPLLMQCRLFYNGLAV 513

Query: 1440 KGTLLVNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIAL 1619
            KGTLLVNRKLPQ TIQIRPSMIKVEADP+LSRA MFNSLEINTPSLKPRNTYLSRTLIAL
Sbjct: 514  KGTLLVNRKLPQRTIQIRPSMIKVEADPRLSRAHMFNSLEINTPSLKPRNTYLSRTLIAL 573

Query: 1620 LTYGGVPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTE 1799
            LTYGGVP EYF+DIL NTLEETQRLYSDEVTALKVAVNHRDRDDAS ATSMIMAGVPLTE
Sbjct: 574  LTYGGVPVEYFYDILNNTLEETQRLYSDEVTALKVAVNHRDRDDASTATSMIMAGVPLTE 633

Query: 1800 PYLWCCLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVL 1979
            PYLWCCLSSLAKEERNGLKGGRLPI+DTFYLMGTADPTDTLN HEVCVILEHGQIFGEVL
Sbjct: 634  PYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGTADPTDTLNRHEVCVILEHGQIFGEVL 693

Query: 1980 VYRNPGLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWV 2159
            +YRNPGLHFGDIHRLLAVPVK L DIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYW+
Sbjct: 694  IYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWI 753

Query: 2160 SQNPQL 2177
            SQNPQL
Sbjct: 754  SQNPQL 759


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  830 bits (2143), Expect = 0.0
 Identities = 463/920 (50%), Positives = 583/920 (63%), Gaps = 15/920 (1%)
 Frame = +3

Query: 324  SDSPTSVPQIPSPPMSPATTSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFL 503
            S SPT    I SP  +P                   +A  +  S QL+ L +LEFRK FL
Sbjct: 74   SHSPTPKHLISSPSSTPK------------------KARRQASSPQLVALGELEFRKAFL 115

Query: 504  ILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFESYIWNKYGHH-CEDNKRVQYLDWDSG 680
            IL+YIG ++ ED++   +   IL L   PM  FE+ +WN  G    ++  R +  DWDS 
Sbjct: 116  ILSYIGDKRPEDLLSAEE---ILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSD 172

Query: 681  RTHLYHCHVHLDGSYTFKGPYLKAERTHLQQSLGDENVLIVKFEEKAP-----RCPEE-- 839
            +TH+YHCHV  DGSY FKGPYL   RTHLQ+ LGDEN+L+VKF E         C  +  
Sbjct: 173  KTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSN 232

Query: 840  -----IVQNGILVGLRRYRFFVYXXXXXXXXXXXXXXXIDAVKCYFVRMESLNPCEKETY 1004
                 I + GI VGLR+YRFFV+                 +VKCYFV MES         
Sbjct: 233  ASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPT---SSVKCYFVFMESS-------- 281

Query: 1005 ILHDKIVHEARCHFMHVHMVSSMAKYMARFSLVLSTTVKLQVDLNSVNIVRIEDMYCHDK 1184
             L  K VHEARC FMH HMVSS+AKYMARFSL+LS TVKL VDL++VNI RI+D    D+
Sbjct: 282  ALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDE 341

Query: 1185 NGCTLYDEDGKPLIHTDGTGYISEDLARRCPQDFFNVKHKCANSERYPNGVKLGENSYEL 1364
            +G  +YDED KPLI TDGTG+ISEDLA RCP +    K+         NG     NS   
Sbjct: 342  DGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYM-------NNG-----NS--- 386

Query: 1365 GEAEFQSVEPPLLMQCRLFYNGLAVKGTLLVNRKLPQCTIQIRPSMIKVEADPKLSRAQM 1544
                      PLL+QCRLF NG AVKGTLL+NRKLP  TIQIRPSMIKVE DPKLS  Q 
Sbjct: 387  ---------DPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQT 437

Query: 1545 FNSLEINTPSLKPRNTYLSRTLIALLTYGGVPTEYFFDILKNTLEETQRLYSDEVTALKV 1724
             NS+EIN  S +PR +YLS+ LIALL+YGGVP EYF ++LK+ LE+   + S +  AL+V
Sbjct: 438  VNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRV 497

Query: 1725 AVNHRDRDDASIATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPISDTFYLMGTA 1904
            ++   + DD SI T MI++G+P+ EP+L  CLS +  EER GL+ G+LP++D FYLMGTA
Sbjct: 498  SLRFGEMDD-SIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTA 556

Query: 1905 DPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKKLRDIVGNAKYGIF 2084
            DPT TL   EVC+IL+HGQ+ G VLVY++PGLHFGDIH L A  V+ L + VGNAKY IF
Sbjct: 557  DPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIF 616

Query: 2085 FSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYAANRPWSRLHSTPKTLHREPIDFSA 2264
            F  KGPRS A E+AN DFDGD YWVS+N QLL+Y+ A+ PW R  ST     + P DFS 
Sbjct: 617  FPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSP 676

Query: 2265 EEREHELFQTFLETRMPNYS-MADASANWYALMDRLLILGKNITTENEEMKSVKEKLFEL 2441
            +E EHELFQ FL TR    S +  A+ NW   MDRLL L  + + E E    +K K+ EL
Sbjct: 677  DELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKE---CLKRKMLEL 733

Query: 2442 IDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKECYHSTSVLGEIYDRVEEFKAEEPT 2621
             D+YYDA+DAPKSG KV + K LK +KFPHF+ ++  YHSTS+LG+IYD VE F+ E  +
Sbjct: 734  TDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQS 793

Query: 2622 AVEIKELSAFEVE-ISETCLRLWEERYRKYRFEMKEALNTSSESKNDLANQVITKYKQLL 2798
              EI  L  F ++ + + CLR W++RY +YR EM  AL    E+K++ A +VI KYKQ+L
Sbjct: 794  TKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQIL 853

Query: 2799 YEAPDMEDSVRSTSDIYNEALAIYRVTYNYAKAIGDVKKCGFAWKVAGSALCRFHAELHA 2978
            Y A + E+S R+  DI++EALAIY VTY +      V  C F W+VAG ALC+    L+ 
Sbjct: 854  YGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCK----LYT 909

Query: 2979 KEHNQKVMAVSPSVLHKLLN 3038
             +  +K M   PSVL ++ N
Sbjct: 910  VKLGEKSMVCVPSVLRQVFN 929


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  825 bits (2130), Expect = 0.0
 Identities = 462/928 (49%), Positives = 582/928 (62%), Gaps = 23/928 (2%)
 Frame = +3

Query: 324  SDSPTSVPQIPSPPMSPATTSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFL 503
            S SPT    I SP  +P                   +A  +  S QL+ L +LEFRK FL
Sbjct: 74   SHSPTPKHLISSPSSTPK------------------KARRQASSPQLVALGELEFRKAFL 115

Query: 504  ILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFESYIWNKYGHH-CEDNKRVQYLDWDSG 680
            IL+YIG  + ED++   +   IL L   PM  FE+ +WN  G    ++  R +  DWDS 
Sbjct: 116  ILSYIGELRPEDLLSAEE---ILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSD 172

Query: 681  RTHLYHCHVHLDGSYTFK--------GPYLKAERTHLQQSLGDENVLIVKFEEKAP---- 824
            +TH+YHCHV  DGSY FK        GPYL   RTHLQ+ LGDEN+L+VKF E       
Sbjct: 173  KTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSS 232

Query: 825  -RCPEE-------IVQNGILVGLRRYRFFVYXXXXXXXXXXXXXXXIDAVKCYFVRMESL 980
              C  +       I + GI VGLR+YRFFV+                 +VKCYFV MES 
Sbjct: 233  LNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPT---SSVKCYFVFMESS 289

Query: 981  NPCEKETYILHDKIVHEARCHFMHVHMVSSMAKYMARFSLVLSTTVKLQVDLNSVNIVRI 1160
                     L  K VHEARC FMH HMVSS+AKYMARFSL+LS TVKL VDL++VNI RI
Sbjct: 290  --------ALSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRI 341

Query: 1161 EDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCPQDFFNVKHKCANSERYPNGVK 1340
            +D    D++G  +YDED KPLI TDGTG+ISEDLA RCP +    K        Y N   
Sbjct: 342  DDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGK--------YMNN-- 391

Query: 1341 LGENSYELGEAEFQSVEPPLLMQCRLFYNGLAVKGTLLVNRKLPQCTIQIRPSMIKVEAD 1520
                    G ++      PLL+QCRLF NG AVKGTLL+NRKLP  TIQIRPSMIKVE D
Sbjct: 392  --------GNSDVCDSRYPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETD 443

Query: 1521 PKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPTEYFFDILKNTLEETQRLYS 1700
            PKLS  Q  NS+EIN  S +PR +YLS+ LIALL+YGGVP EYF ++LK+ LE+   + S
Sbjct: 444  PKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQS 503

Query: 1701 DEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPISD 1880
             +  AL+V++   + DD SI T MI++G+P+ EP+L  CLS +  EER GL+ G+LP++D
Sbjct: 504  SKRAALRVSLRFGEMDD-SIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVND 562

Query: 1881 TFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKKLRDIV 2060
             FYLMGTADPT TL   EVC+IL+HGQ+ G VLVY++PGLHFGDIH L A  V+ L + V
Sbjct: 563  CFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFV 622

Query: 2061 GNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYAANRPWSRLHSTPKTLH 2240
            GNAKY IFF  KGPRS A E+AN DFDGD YWVS+N QLL+Y+ A+ PW R  ST     
Sbjct: 623  GNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPS 682

Query: 2241 REPIDFSAEEREHELFQTFLETRMPNYS-MADASANWYALMDRLLILGKNITTENEEMKS 2417
            + P DFS +E EHELFQ FL TR    S +  A+ NW   MDRLL L  + + E E    
Sbjct: 683  KRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKE---C 739

Query: 2418 VKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKECYHSTSVLGEIYDRVE 2597
            +K K+ EL D+YYDA+DAPKSG KV + K LK +KFPHF+ ++  YHSTS+LG+IYD VE
Sbjct: 740  LKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSYHSTSILGQIYDAVE 799

Query: 2598 EFKAEEPTAVEIKELSAFEVE-ISETCLRLWEERYRKYRFEMKEALNTSSESKNDLANQV 2774
             F+ E  +  EI  L  F ++ + + CLR W++RY +YR EM  AL    E+K++ A +V
Sbjct: 800  SFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEV 859

Query: 2775 ITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTYNYAKAIGDVKKCGFAWKVAGSALC 2954
            I KYKQ+LY A + E+S R+  DI++EALAIY VTY +      V  C F W+VAG ALC
Sbjct: 860  INKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALC 919

Query: 2955 RFHAELHAKEHNQKVMAVSPSVLHKLLN 3038
            +    L+  +  +K M   PSVL ++ N
Sbjct: 920  K----LYTVKLGEKSMVCVPSVLRQVFN 943


>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 911

 Score =  823 bits (2127), Expect = 0.0
 Identities = 444/906 (49%), Positives = 596/906 (65%), Gaps = 5/906 (0%)
 Frame = +3

Query: 9    VRGILNTIGEECSLDILRKISKCEIRKTLGGFIVFMAKKYYGLETQQFYSQQQEVASAES 188
            +R  L++IGE+ SL+IL+ IS   I+K+L  F+V++  +Y    +   ++   + +S+  
Sbjct: 44   IRRRLSSIGEKGSLEILKIISSRPIKKSLSAFLVYLIDRYPDCLSSSPFNSPLKRSSSPL 103

Query: 189  FYHSPKIHRIXXXXXXXXXXXXXXXPRNTPIFQGTGHDNDIVGDVSDSPTSVPQIPSPPM 368
             + SP+  R+                      QG           S S + +        
Sbjct: 104  LFPSPEGKRV----------------------QGE----------SPSKSKLEMGFLACA 131

Query: 369  SPATTSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLEDVIM 548
            SP   + Q  F +  +S  R   ++  +S+QL+ L++LEFRK FL+L+YIG +KLED++ 
Sbjct: 132  SPQKVARQLSFREEPESNCR--RTSPNVSQQLMILNELEFRKLFLVLSYIGCKKLEDIVS 189

Query: 549  LHDVGDILDLIYQPMSHFESYIWNKYGH-HCEDNKRVQYLDWDSGRTHLYHCHVHLDGSY 725
                 DI+      M+ FES IWN +G  +  ++ R +Y+DW+  +TH+Y+CH+  +G  
Sbjct: 190  PQIADDIVRKKNLSMTDFESEIWNAFGKAYYAESDRSKYVDWNCRKTHIYYCHIKQNGQC 249

Query: 726  TFKGPYLKAERTHLQQSLGDENVLIVKFEEKAPRCPEEIVQNGILVGLRRYRFFVYXXXX 905
            TFKGPYL   RTHLQ++LGD+NVL+VKF E    C   IV+ GILVGLRRYRFFVY    
Sbjct: 250  TFKGPYLNTARTHLQRALGDDNVLLVKFVEDTS-CANMIVEEGILVGLRRYRFFVYKDDK 308

Query: 906  XXXXXXXXXXXIDA-VKCYFVRMESLNPC-EKETYILHDKIVHEARCHFMHVHMVSSMAK 1079
                         A +KCYFVR ES+  C +  +Y+   K + +ARC FMHVHMVS+MAK
Sbjct: 309  EKKKSPAMMKKKTASLKCYFVRFESIETCNDGGSYVFSTKRISQARCQFMHVHMVSNMAK 368

Query: 1080 YMARFSLVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISED 1259
            Y AR SL+LS T+KLQV+L SV I RIED+ C D+NGC + DEDG+P IHTDGTG+ISED
Sbjct: 369  YAARLSLILSKTIKLQVNLASVTIERIEDILCRDENGCIIKDEDGEPRIHTDGTGFISED 428

Query: 1260 LARRCPQDFFNVKHKCANSERYPNGVKLGENSYELGEAEFQSVEPPLLMQCRLFYNGLAV 1439
            LA  CP+DF  VK +    E Y N V + +   E  E+   + EPPLLMQCRLF+NG AV
Sbjct: 429  LAMHCPKDF--VKAEYIKDENYENFVDIVDLDAERRESVSWNREPPLLMQCRLFFNGCAV 486

Query: 1440 KGTLLVNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIAL 1619
            KGT LVNRK+    I IRPSM+KVE DP +S    F+SLEI   S +P   YLS+ LI+L
Sbjct: 487  KGTFLVNRKIGSRKIHIRPSMVKVEIDPAISSIPTFDSLEIVAISHRPNKAYLSKNLISL 546

Query: 1620 LTYGGVPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTE 1799
            L+YGGV  EYF ++L + LEET+++Y  +  ALKV +N+R+ DD  +   MI +G+PL E
Sbjct: 547  LSYGGVQKEYFMELLGSALEETKQVYLRKRAALKVVINYREMDDDCLTARMISSGIPLNE 606

Query: 1800 PYLWCCLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVL 1979
            P+L   LS LAK ER  L+GG+LPISD+FYLMGTADPT  L  +EVCVIL++GQI G VL
Sbjct: 607  PHLRARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDNGQISGRVL 666

Query: 1980 VYRNPGLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWV 2159
            VYRNPGLHFGD+H + A  V++L D+VG+AKYGIFFSTKGPRSAATEIANGDFDGD YWV
Sbjct: 667  VYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIANGDFDGDMYWV 726

Query: 2160 SQNPQLLKYYAANRPWSRLHSTPKTLHREPIDFSAEEREHELFQTFLETRMPNYSMADAS 2339
            S N +++  Y  +RPWSR+HSTPK + ++P +FSA++ E+ELF+ FLE +    +M+ A+
Sbjct: 727  SINRKVVDSYTTSRPWSRMHSTPKAVSKKPSEFSADKLEYELFRQFLEAKSKGANMSVAA 786

Query: 2340 ANWYALMDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVD 2519
             +W A MDRLL+L  +     +EM S+K K+  LID+YYDA+DAPKSG KV IP  LK +
Sbjct: 787  DSWLAFMDRLLMLRDD---NVDEMHSLKGKMLHLIDIYYDALDAPKSGKKVSIPHDLKAN 843

Query: 2520 KFPHFLQKKE--CYHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFEVEISETCLRLWEE 2693
            KFPH++ K     YHSTS+LG+IYD V+ +  E+    EI +L  FEVEI +TC+ LW  
Sbjct: 844  KFPHYMAKGNSLSYHSTSILGQIYDYVDTYPDEDLCITEISKLPCFEVEIPQTCMELWRG 903

Query: 2694 RYRKYR 2711
            RY +Y+
Sbjct: 904  RYEEYK 909


>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 1011

 Score =  790 bits (2040), Expect = 0.0
 Identities = 460/1027 (44%), Positives = 628/1027 (61%), Gaps = 18/1027 (1%)
 Frame = +3

Query: 9    VRGILNTIGEECSLDILRKISKCEIRKTLGGFIVFMAKKYYGLETQQFYSQQQEVASAES 188
            +R  L++IGE+ SL++L+ IS+  I+K+L  F+V+M  +Y             +  S+ S
Sbjct: 40   IRRRLSSIGEKGSLEMLKIISRRPIKKSLSAFLVYMIDRY------------PDCLSSSS 87

Query: 189  FYHSPKIHRIXXXXXXXXXXXXXXXPRNTPIFQGTGHDNDIVGDVSDSPTSVPQIPSPPM 368
               +  + R                PR  P  +G     +     S S + +        
Sbjct: 88   SPFNCLLKR-------------SSSPRLFPSPEGKRLQGE-----SSSKSKLEMGLLACA 129

Query: 369  SPATTSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLEDVIM 548
            SP   + Q  F +  +S  R   ++  +S+QL+ L++LEFRK FL+L+YIG  KLEDVI 
Sbjct: 130  SPQKVARQLSFCEEPESNCR--RTSPYVSQQLMILNELEFRKLFLVLSYIGCNKLEDVIS 187

Query: 549  LHDVGDILDLIYQPMSHFESYIWNKYGHHCEDNKRVQYLDWDSGRTHLYHCHVHLDGSYT 728
                 DI+      M+ FES IWN +G  C            S R+      V +  +Y 
Sbjct: 188  PQIADDIVRKKNLSMTDFESEIWNAFGKACYAV---------SDRSKDDKTAVRIVATYD 238

Query: 729  FKGPYLKAERTHLQQSLGDENVLIVKFEEKAPR-------CPEEIVQNGILVGLRRYRFF 887
                  +  R    Q +G      +K  + +         C  +I ++G+   +    +F
Sbjct: 239  VVDA--RPSRMAGSQPMGGPKEFSMKLVQASKCWTTVKAVCVRKISESGLKSPVENRSWF 296

Query: 888  ------VYXXXXXXXXXXXXXXXIDA-VKCYFVRMESLNPC-EKETYILHDKIVHEARCH 1043
                  VY                 A +KCYFVR ES+  C + E+Y+   K + +ARC 
Sbjct: 297  SSLEQGVYKDDKERKKSPAMMKTKTASLKCYFVRFESIGTCNDGESYVFSTKTISQARCK 356

Query: 1044 FMHVHMVSSMAKYMARFSLVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPL 1223
            FMHVHMVS+MAKY AR SL+LS T+KLQ DL+SV I RIED+ C D+NGC + DEDG+P 
Sbjct: 357  FMHVHMVSNMAKYAARLSLILSKTIKLQTDLDSVTIERIEDILCRDENGCIIQDEDGEPR 416

Query: 1224 IHTDGTGYISEDLARRCPQDFFNVKH-KCANSERYPNGVKLGENSYELGEAEFQSVEPPL 1400
            IHTDGTG+ISEDLA  CP+DF   ++ K  N E + + V L + + E   +  ++ +P  
Sbjct: 417  IHTDGTGFISEDLAMHCPKDFSKAEYIKDENYENFVDIVDLDDVNVERRVSVSRNRKP-- 474

Query: 1401 LMQCRLFYNGLAVKGTLLVNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLK 1580
               CRLF+NG AVKGT LVNRK+    I IRPSM+KVE DP +S    F+SLEI   S +
Sbjct: 475  ---CRLFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPTISSIPTFDSLEIVAISHR 531

Query: 1581 PRNTYLSRTLIALLTYGGVPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASI 1760
            P   YLS+ LI+LL+YGGV  EYF ++L + LEET+++Y  +  ALKVA+N+R+ DD  +
Sbjct: 532  PNKAYLSKNLISLLSYGGVHKEYFMELLGSALEETKQVYLRKRAALKVAINYREMDDECL 591

Query: 1761 ATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVC 1940
               MI +G+PL EP+L   LS LAK ER  L+GG+LPISD+FYLMGTADPT  L  +EVC
Sbjct: 592  TARMISSGIPLNEPHLHARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVC 651

Query: 1941 VILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATE 2120
            VIL++GQ+ G VLVYRNPGLHFGD+H + A  V++L D+VG+AKYGIFFSTKGPRSAATE
Sbjct: 652  VILDNGQVSGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATE 711

Query: 2121 IANGDFDGDKYWVSQNPQLLKYYAANRPWSRLHSTPKTLHREPIDFSAEEREHELFQTFL 2300
            IANGDFDGD YWVS N +L+  Y  +RPW R+HSTP  + ++P +FSA+E E+ELF+ FL
Sbjct: 712  IANGDFDGDMYWVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEYELFRQFL 771

Query: 2301 ETRMPNYSMADASANWYALMDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAPKS 2480
            E +    +M+ A+ +W A MDRLL L  +     ++M S+K K+  LID+YYDA+DAPKS
Sbjct: 772  EAKSKGANMSLAADSWLAFMDRLLTLRDD---NVDDMHSLKGKMLHLIDIYYDALDAPKS 828

Query: 2481 GNKVYIPKRLKVDKFPHFLQK-KEC-YHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFE 2654
            G KV IP  LK +KFPH+++K   C YHSTS+LG+IYD V+ +  E+    EI +L  FE
Sbjct: 829  GKKVSIPHYLKANKFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDLCITEISKLPCFE 888

Query: 2655 VEISETCLRLWEERYRKYRFEMKEALNTSSESKNDLANQVITKYKQLLYEAPDMEDSVRS 2834
            VEI + C+ LW  RY +Y+ +M  A+N   E +    N+VI KYK LLY A + E +VR 
Sbjct: 889  VEIPQRCMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGAVEFEQTVRK 948

Query: 2835 TSDIYNEALAIYRVTYNYAKAIGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAVSP 3014
            T DI++EALAIY VTY+ A+    ++KCGFAWKVAGSALCR HA ++ KE   K + + P
Sbjct: 949  TEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHA-MYRKE---KDLPILP 1004

Query: 3015 SVLHKLL 3035
            SVL ++L
Sbjct: 1005 SVLQEIL 1011


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  785 bits (2027), Expect = 0.0
 Identities = 472/1031 (45%), Positives = 630/1031 (61%), Gaps = 24/1031 (2%)
 Frame = +3

Query: 12   RGILNTIGEECSLDILRKISKCEIRKTLGGFIVFMAKKYYGLETQQFYSQQQEVASAESF 191
            R  L ++GE+ +LD+LR I+  +I+ +  G+I ++ KK          S  + V  + S 
Sbjct: 40   RRSLASLGEDAALDVLRTIASDKIKYSFSGYINYLVKK-----RNNNGSPLKRVCFSPS- 93

Query: 192  YHSPKIHRIXXXXXXXXXXXXXXXPRNTPIFQGTGHDNDIVGDVSDSPTSVPQIPSPPMS 371
              SP+ +R                  N P  QGT +       V  SP +  Q    PMS
Sbjct: 94   --SPQQNRSPVTVTTVRLL-------NLP--QGTDYV------VKQSPVADQQPRGSPMS 136

Query: 372  PATTSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLEDVIML 551
              + +             R RAS      Q + L +LEFRK FLIL+YIG   LE+VI  
Sbjct: 137  SISHAM------------RHRASI----PQYVALGELEFRKAFLILSYIGENSLEEVITA 180

Query: 552  HDVGDILDLIYQPMSHFESYIWNKYGH-HCEDNKRVQYLDWDSGRTHLYHCHVHLDGSYT 728
             ++  + DL    M+ FES +W K G  +     R   L WDSG+TH+YHCH+   G+ T
Sbjct: 181  DEIRGMRDL---QMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGNCT 237

Query: 729  FKGPYLKAERTHLQQSLGDENVLIVKFEEK------------APRCPEEIVQNGILVGLR 872
            FKGPYL   RTHLQ+ LGD+N+L+VKF+E+            +     EI + GILVGLR
Sbjct: 238  FKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLR 297

Query: 873  RYRFFVYXXXXXXXXXXXXXXXIDAVKCYFVRMESLNPCEKE-TYILHDKIVHEARCHFM 1049
             Y FFV+                  VKCYFVRMES    +    YIL  K VHEAR  FM
Sbjct: 298  CYHFFVFKDGGKEEKKKDPST--SPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMFM 355

Query: 1050 HVHMVSSMAKYMARFSLVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIH 1229
            HV  VSS+A YM+R SL+LS T+KL+VD + +NI RIED  C DK+G  +Y +DG+ LIH
Sbjct: 356  HVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALIH 414

Query: 1230 TDGTGYISEDLARRCPQDFFNVKHKCAN---SERYPNGVKLGENSYELGEAEFQSVEPPL 1400
            TDGTG+ISEDLA +CP   +  K KC N   +ER  +  +L  N  ++   E    EPPL
Sbjct: 415  TDGTGFISEDLALKCPTYVY--KEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPL 472

Query: 1401 LMQCRLFYNGLAVKGTLLVNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLK 1580
            LMQ RLFYNG AVKGTLL+N+KLP  TIQIRPSMIKV+AD  LS  Q FNSLE+   S +
Sbjct: 473  LMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQ 532

Query: 1581 PRNTYLSRTLIALLTYGGVPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASI 1760
            PR TYLSR LIALL+YGGVP  +F DIL+N L++ + ++S++  ALKV+ N+   D    
Sbjct: 533  PRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFT 592

Query: 1761 ATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVC 1940
            +  MI++G+ L EPYL   LS L KEE+  L+ G+LP+++++YLMGT DPT  L  +EVC
Sbjct: 593  SARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVC 652

Query: 1941 VILEHGQIFGE-VLVYRNPGLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAAT 2117
            +IL+ GQ+  E VLVYRNPGLHFGDIH L A  VK+L D VG +KY IFF   GPRS A 
Sbjct: 653  IILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLAD 712

Query: 2118 EIANGDFDGDKYWVSQNPQLLKYYAANRPWSRLHSTPKTL--HREPIDFSAEEREHELFQ 2291
            EIA GDFDGD Y+VS+NP+LLK++  +  W    ST K L  ++ PIDFS EE E ELF+
Sbjct: 713  EIAGGDFDGDMYFVSRNPELLKHFKESERWM---STSKNLSANKRPIDFSLEELESELFK 769

Query: 2292 TFLETRM-PNYSMADASANWYALMDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAID 2468
             FL TR  P+ + + A+  W A+MDR L LG       EE  ++KE +  LI++YYDA+D
Sbjct: 770  LFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDE---SAEEKAAMKENMLRLINIYYDALD 826

Query: 2469 AP-KSGNKVYIPKRLKVDKFPHFLQKKE--CYHSTSVLGEIYDRVEEFKAEEPTAVEIKE 2639
            AP KSG KV +P+ LKV+KFP ++++ E   + STSVLG IY+ V+ ++A + +  EI +
Sbjct: 827  APKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWK 886

Query: 2640 LSAFEVEISETCLRLWEERYRKYRFEMKEALNTSSESKNDLANQVITKYKQLLYEAPDME 2819
            L  F+  + E C+  W+  Y +YR+EMKEA++  +  + + A  VI KYKQ+LY A + E
Sbjct: 887  LPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFE 946

Query: 2820 DSVRSTSDIYNEALAIYRVTYNYAKAIGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKV 2999
             S R+  +IYNEALAIY +TY+ A +   V  C FAW+VAGSAL +F    +A+    + 
Sbjct: 947  QSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKF----YARRQGDRS 1002

Query: 3000 MAVSPSVLHKL 3032
            M  S SVL ++
Sbjct: 1003 MLCSASVLREI 1013


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  785 bits (2027), Expect = 0.0
 Identities = 433/891 (48%), Positives = 584/891 (65%), Gaps = 21/891 (2%)
 Frame = +3

Query: 426  RDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFE 605
            R R +    S+ L+ L +LEFRK FLIL+Y+G + LE+V+ +  +    DL   PM  FE
Sbjct: 5    RQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDL---PMRTFE 61

Query: 606  SYIWNKYG---HHCEDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFKGPYLKAERTHLQQS 776
            S IW  +G    + ++  RV+YLDWDSG+TH+YHCHV  DGSY FKGPYL   R  LQ++
Sbjct: 62   SKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRT 121

Query: 777  LGDENVLIVKFEE------KAPRCPEE-------IVQNGILVGLRRYRFFVYXXXXXXXX 917
            LGD+N+L+VKF E         R  ++       ++  GI VGLR YRFFV+        
Sbjct: 122  LGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEK 181

Query: 918  XXXXXXXIDAVKCYFVRMESLNPCEKETYILHDKIVHEARCHFMHVHMVSSMAKYMARFS 1097
                      VKC+FVRMES+   + +  IL  K + +AR  FMHV  +SS++ YMARFS
Sbjct: 182  KKDPTT--SPVKCFFVRMESVASIDNQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFS 239

Query: 1098 LVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCP 1277
            L+LS T+ L+VDL+ V+I  I D  C DK+G  +Y  DGKPLIHTDGTG+IS DLA +CP
Sbjct: 240  LILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCP 299

Query: 1278 QDFFNVKHKCANSERYPNGVKLGENSYELGE-AEFQSVEPPLLMQCRLFYNGLAVKGTLL 1454
            ++ F  K  C    R  N  +L  ++  + +  E ++ +PPLL+Q RLF NG AVKGT L
Sbjct: 300  KNQF--KGTCL---RASNIERLNVHNEVMEQYPECRNGDPPLLIQFRLFNNGRAVKGTFL 354

Query: 1455 VNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGG 1634
            VN+KL   T+ IRPSMIKVE DPKLS     NSLEI   S +P+ T+LS+ LIALL+YGG
Sbjct: 355  VNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGG 414

Query: 1635 VPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWC 1814
            VP E+F  I+ N LE+   + S++  AL+VA+N+ D DD  +AT MI  G+PL EPYL C
Sbjct: 415  VPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVAT-MIGCGIPLEEPYLQC 473

Query: 1815 CLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNP 1994
             LS L KEE+  LKGG++P+ +++YLMGTADPT  L   EVC+IL+ GQI GEVL+YRNP
Sbjct: 474  RLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNP 533

Query: 1995 GLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQ 2174
            GLHFGDIH L A  V++L D VGNAKY IFF  KGPRS A E++ GDFDGD ++VS+NPQ
Sbjct: 534  GLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQ 593

Query: 2175 LLKYYAANRPWSRLHSTPKTLHREPIDFSAEEREHELFQTFLETR-MPNYSMADASANWY 2351
            LL+ +    PW+   STP   +R+P +FS EE E ELF+ FL  R  P+ ++  A+ +W 
Sbjct: 594  LLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWL 653

Query: 2352 ALMDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAP-KSGNKVYIPKRLKVDKFP 2528
            A+MDRLL LG +     EE+  +KE +  LID+YYDA+DAP K G ++ +P+ LK + FP
Sbjct: 654  AMMDRLLTLGNDCA---EEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFP 710

Query: 2529 HFLQK--KECYHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFEVEISETCLRLWEERYR 2702
            HF+ K  K+ Y STS+LG+IYD+V+ ++  + ++ ++ +L  F+ E+ E  L  W+E Y 
Sbjct: 711  HFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYG 770

Query: 2703 KYRFEMKEALNTSSESKNDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTY 2882
            +YR EM+ AL    ES ND AN+VI KYK+ LYEA +   S R   +I+ EA+A+Y+V+Y
Sbjct: 771  QYRKEMRNALKAGEES-NDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSY 829

Query: 2883 NYAKAIGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKLL 3035
            N+AK+ G V  C FAW+VAG ALC  +     K   ++ M  SPS L  +L
Sbjct: 830  NHAKSQGVVGNCSFAWRVAGLALCTLYV---LKNQGERPMICSPSALKGIL 877


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  785 bits (2027), Expect = 0.0
 Identities = 433/891 (48%), Positives = 584/891 (65%), Gaps = 21/891 (2%)
 Frame = +3

Query: 426  RDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFE 605
            R R +    S+ L+ L +LEFRK FLIL+Y+G + LE+V+ +  +    DL   PM  FE
Sbjct: 27   RQRGNESTTSQHLVALGELEFRKAFLILSYLGGKNLEEVVSVDQIRGYKDL---PMRTFE 83

Query: 606  SYIWNKYG---HHCEDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFKGPYLKAERTHLQQS 776
            S IW  +G    + ++  RV+YLDWDSG+TH+YHCHV  DGSY FKGPYL   R  LQ++
Sbjct: 84   SKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKLRNVLQRT 143

Query: 777  LGDENVLIVKFEE------KAPRCPEE-------IVQNGILVGLRRYRFFVYXXXXXXXX 917
            LGD+N+L+VKF E         R  ++       ++  GI VGLR YRFFV+        
Sbjct: 144  LGDDNILMVKFGEVKDDRDSGSRSLDDYFSKYNKVLGEGIHVGLRCYRFFVFKDGGKEEK 203

Query: 918  XXXXXXXIDAVKCYFVRMESLNPCEKETYILHDKIVHEARCHFMHVHMVSSMAKYMARFS 1097
                      VKC+FVRMES+   + +  IL  K + +AR  FMHV  +SS++ YMARFS
Sbjct: 204  KKDPTT--SPVKCFFVRMESVASIDNQDNILSGKTIRQARSVFMHVDNLSSLSNYMARFS 261

Query: 1098 LVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCP 1277
            L+LS T+ L+VDL+ V+I  I D  C DK+G  +Y  DGKPLIHTDGTG+IS DLA +CP
Sbjct: 262  LILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPLIHTDGTGFISHDLALKCP 321

Query: 1278 QDFFNVKHKCANSERYPNGVKLGENSYELGE-AEFQSVEPPLLMQCRLFYNGLAVKGTLL 1454
            ++ F  K  C    R  N  +L  ++  + +  E ++ +PPLL+Q RLF NG AVKGT L
Sbjct: 322  KNQF--KGTCL---RASNIERLNVHNEVMEQYPECRNGDPPLLIQFRLFNNGRAVKGTFL 376

Query: 1455 VNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGG 1634
            VN+KL   T+ IRPSMIKVE DPKLS     NSLEI   S +P+ T+LS+ LIALL+YGG
Sbjct: 377  VNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGG 436

Query: 1635 VPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWC 1814
            VP E+F  I+ N LE+   + S++  AL+VA+N+ D DD  +AT MI  G+PL EPYL C
Sbjct: 437  VPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVAT-MIGCGIPLEEPYLQC 495

Query: 1815 CLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNP 1994
             LS L KEE+  LKGG++P+ +++YLMGTADPT  L   EVC+IL+ GQI GEVL+YRNP
Sbjct: 496  RLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNP 555

Query: 1995 GLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQ 2174
            GLHFGDIH L A  V++L D VGNAKY IFF  KGPRS A E++ GDFDGD ++VS+NPQ
Sbjct: 556  GLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQ 615

Query: 2175 LLKYYAANRPWSRLHSTPKTLHREPIDFSAEEREHELFQTFLETR-MPNYSMADASANWY 2351
            LL+ +    PW+   STP   +R+P +FS EE E ELF+ FL  R  P+ ++  A+ +W 
Sbjct: 616  LLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWL 675

Query: 2352 ALMDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAP-KSGNKVYIPKRLKVDKFP 2528
            A+MDRLL LG +     EE+  +KE +  LID+YYDA+DAP K G ++ +P+ LK + FP
Sbjct: 676  AMMDRLLTLGNDCA---EEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFP 732

Query: 2529 HFLQK--KECYHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFEVEISETCLRLWEERYR 2702
            HF+ K  K+ Y STS+LG+IYD+V+ ++  + ++ ++ +L  F+ E+ E  L  W+E Y 
Sbjct: 733  HFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKWKELYG 792

Query: 2703 KYRFEMKEALNTSSESKNDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTY 2882
            +YR EM+ AL    ES ND AN+VI KYK+ LYEA +   S R   +I+ EA+A+Y+V+Y
Sbjct: 793  QYRKEMRNALKAGEES-NDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSY 851

Query: 2883 NYAKAIGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKLL 3035
            N+AK+ G V  C FAW+VAG ALC  +     K   ++ M  SPS L  +L
Sbjct: 852  NHAKSQGVVGNCSFAWRVAGLALCTLYV---LKNQGERPMICSPSALKGIL 899


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  783 bits (2023), Expect = 0.0
 Identities = 470/1033 (45%), Positives = 631/1033 (61%), Gaps = 26/1033 (2%)
 Frame = +3

Query: 12   RGILNTIGEECSLDILRKISKCEIRKTLGGFIVFMAKKYYGLETQQFYSQQQEVASAESF 191
            R  L ++GE+ +LD+LR I+  +I+ +  G+I ++ KK          S  + V  + S 
Sbjct: 40   RRSLASLGEDAALDVLRTIASDKIKYSFSGYINYLVKK-----RNNNGSPLKRVCFSPS- 93

Query: 192  YHSPKIHRIXXXXXXXXXXXXXXXPRNTPIFQGTGHDNDIVGD--VSDSPTSVPQIPSPP 365
              SP+ +R                   +P+   T    ++  D  V  SP +  Q    P
Sbjct: 94   --SPQQNR-------------------SPVTVTTVRLLNLPQDYVVKQSPVADQQPRGSP 132

Query: 366  MSPATTSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLEDVI 545
            MS  + +             R RAS      Q + L +LEFRK FLIL+YIG   LE+VI
Sbjct: 133  MSSISHAM------------RHRASI----PQYVALGELEFRKAFLILSYIGENSLEEVI 176

Query: 546  MLHDVGDILDLIYQPMSHFESYIWNKYGH-HCEDNKRVQYLDWDSGRTHLYHCHVHLDGS 722
               ++  + DL    M+ FES +W K G  +     R   L WDSG+TH+YHCH+   G+
Sbjct: 177  TADEIRGMRDL---QMARFESEVWEKLGRKNISQEDRRMSLKWDSGKTHMYHCHISTKGN 233

Query: 723  YTFKGPYLKAERTHLQQSLGDENVLIVKFEEK------------APRCPEEIVQNGILVG 866
             TFKGPYL   RTHLQ+ LGD+N+L+VKF+E+            +     EI + GILVG
Sbjct: 234  CTFKGPYLNQTRTHLQRELGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVG 293

Query: 867  LRRYRFFVYXXXXXXXXXXXXXXXIDAVKCYFVRMESLNPCEKE-TYILHDKIVHEARCH 1043
            LR Y FFV+                  VKCYFVRMES    +    YIL  K VHEAR  
Sbjct: 294  LRCYHFFVFKDGGKEEKKKDPST--SPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYM 351

Query: 1044 FMHVHMVSSMAKYMARFSLVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPL 1223
            FMHV  VSS+A YM+R SL+LS T+KL+VD + +NI RIED  C DK+G  +Y +DG+ L
Sbjct: 352  FMHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEAL 410

Query: 1224 IHTDGTGYISEDLARRCPQDFFNVKHKCAN---SERYPNGVKLGENSYELGEAEFQSVEP 1394
            IHTDGTG+ISEDLA +CP   +  K KC N   +ER  +  +L  N  ++   E    EP
Sbjct: 411  IHTDGTGFISEDLALKCPTYVY--KEKCTNDDSTERSIDRKELEANFSDVARTESHYGEP 468

Query: 1395 PLLMQCRLFYNGLAVKGTLLVNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPS 1574
            PLLMQ RLFYNG AVKGTLL+N+KLP  TIQIRPSMIKV+AD  LS  Q FNSLE+   S
Sbjct: 469  PLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTS 528

Query: 1575 LKPRNTYLSRTLIALLTYGGVPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDA 1754
             +PR TYLSR LIALL+YGGVP  +F DIL+N L++ + ++S++  ALKV+ N+   D  
Sbjct: 529  NQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYD 588

Query: 1755 SIATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHE 1934
              +  MI++G+ L EPYL   LS L KEE+  L+ G+LP+++++YLMGT DPT  L  +E
Sbjct: 589  FTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNE 648

Query: 1935 VCVILEHGQIFGE-VLVYRNPGLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSA 2111
            VC+IL+ GQ+  E VLVYRNPGLHFGDIH L A  VK+L D VG +KY IFF   GPRS 
Sbjct: 649  VCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSL 708

Query: 2112 ATEIANGDFDGDKYWVSQNPQLLKYYAANRPWSRLHSTPKTL--HREPIDFSAEEREHEL 2285
            A EIA GDFDGD Y+VS+NP+LLK++  +  W    ST K L  ++ PIDFS EE E EL
Sbjct: 709  ADEIAGGDFDGDMYFVSRNPELLKHFKESERWM---STSKNLSANKRPIDFSLEELESEL 765

Query: 2286 FQTFLETRM-PNYSMADASANWYALMDRLLILGKNITTENEEMKSVKEKLFELIDLYYDA 2462
            F+ FL TR  P+ + + A+  W A+MDR L LG       EE  ++KE +  LI++YYDA
Sbjct: 766  FKLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDE---SAEEKAAMKENMLRLINIYYDA 822

Query: 2463 IDAP-KSGNKVYIPKRLKVDKFPHFLQKKE--CYHSTSVLGEIYDRVEEFKAEEPTAVEI 2633
            +DAP KSG KV +P+ LKV+KFP ++++ E   + STSVLG IY+ V+ ++A + +  EI
Sbjct: 823  LDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEI 882

Query: 2634 KELSAFEVEISETCLRLWEERYRKYRFEMKEALNTSSESKNDLANQVITKYKQLLYEAPD 2813
             +L  F+  + E C+  W+  Y +YR+EMKEA++  +  + + A  VI KYKQ+LY A +
Sbjct: 883  WKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAE 942

Query: 2814 MEDSVRSTSDIYNEALAIYRVTYNYAKAIGDVKKCGFAWKVAGSALCRFHAELHAKEHNQ 2993
             E S R+  +IYNEALAIY +TY+ A +   V  C FAW+VAGSAL +F    +A+    
Sbjct: 943  FEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKF----YARRQGD 998

Query: 2994 KVMAVSPSVLHKL 3032
            + M  S SVL ++
Sbjct: 999  RSMLCSASVLREI 1011


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  781 bits (2016), Expect = 0.0
 Identities = 438/893 (49%), Positives = 581/893 (65%), Gaps = 23/893 (2%)
 Frame = +3

Query: 426  RDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFE 605
            R R S    S+ L+ L +LEFRK FLILNY+G + LE+V+    +    DL   PM  FE
Sbjct: 5    RQRGSESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDL---PMETFE 61

Query: 606  SYIWNKYG---HHCEDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFKGPYLKAERTHLQQS 776
            S IW+ +G    + ++  RV+YLDWDSG+ H+YHCHV  DGSY FKGPYL  +R  LQ++
Sbjct: 62   SKIWDAFGCRRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQRT 121

Query: 777  LGDENVLIVKFEE-KAPRCP------------EEIVQNGILVGLRRYRFFVYXXXXXXXX 917
            LGD+N+L+VKFEE K  R               ++++ GI VGLR YRFFV+        
Sbjct: 122  LGDDNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDGGKEEK 181

Query: 918  XXXXXXXIDAVKCYFVRMESLNPCEKETYILHDKIVHEARCHFMHVHMVSSMAKYMARFS 1097
                      VKC+FV MES+   + +  IL  K + +AR  FMHV  +SS++ YMARFS
Sbjct: 182  KKDPTT--SPVKCFFVCMESVASVDNQDNILCGKTIRQARSVFMHVDNLSSLSNYMARFS 239

Query: 1098 LVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCP 1277
            L+LS T+ L+VDL+ V+I  I D  C DK+G  +Y  DGKPLIHTDGTG+IS DLA +CP
Sbjct: 240  LILSKTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCP 299

Query: 1278 QDFFNVKHKC---ANSERYPNGVKLGENSYELGEAEFQSVEPPLLMQCRLFYNGLAVKGT 1448
            ++   VK  C   +N ER     ++ E + E    +     PPLL+Q RLF NG AVKGT
Sbjct: 300  KN--QVKGTCLQASNIERLRVHNEVMEQNPECLHGD-----PPLLIQFRLFNNGRAVKGT 352

Query: 1449 LLVNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTY 1628
             LVN+KL   T+ +RPSMIKVE DPKLS     NSLEI   S +P+ T+LS+ LIALL+Y
Sbjct: 353  FLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSY 412

Query: 1629 GGVPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYL 1808
            GGVP E+F  IL N LE+   + S++  AL+VA+N+ D DD  +AT MI  G+PL EPYL
Sbjct: 413  GGVPEEFFMGILNNALEDAHGILSNKKAALRVALNYGDMDDNIVAT-MIGCGIPLEEPYL 471

Query: 1809 WCCLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYR 1988
               LS L KEE+  LKGG++P+ +++YLMGTADPT  L   EVC+IL+ GQ+ GEVLVYR
Sbjct: 472  QHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYR 531

Query: 1989 NPGLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQN 2168
            NPGLHFGDIH L A  V++L D VGNAKY IFF  KGPRS A E++ GDFDGD ++VS+N
Sbjct: 532  NPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRN 591

Query: 2169 PQLLKYYAANRPWSRLHSTPKTLHREPIDFSAEEREHELFQTFLETR-MPNYSMADASAN 2345
            P+LL+ +    PW+   STP   +R+P +FS EE E ELF+ FL  R  P++++  A+ +
Sbjct: 592  PRLLENFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSFTVGVAADS 651

Query: 2346 WYALMDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAP-KSGNKVYIPKRLKVDK 2522
            W A+MDRLL LG + T   EE+  VK+ +  LID+YYDA+DAP K G K+ +P+ LK + 
Sbjct: 652  WLAMMDRLLTLGNDCT---EEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAEL 708

Query: 2523 FPHFLQK--KECYHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFEVEISETCLRLWEER 2696
            FPHF++K  K+ Y STS+LG+IYD+V+        A E  +LS+    + E+CL  W+  
Sbjct: 709  FPHFMEKHEKKTYRSTSILGKIYDKVK--------AYEDMDLSS---NVHESCLVKWKGL 757

Query: 2697 YRKYRFEMKEALNTSSESKNDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRV 2876
            Y +YR EM+ AL    E KN+ AN+VI KYK++LYEA +   S R   +I+ EA A+Y+V
Sbjct: 758  YGQYRTEMRNALQAGKE-KNNEANEVIKKYKEILYEAAEFNLSRRRDEEIFEEARALYQV 816

Query: 2877 TYNYAKAIGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKLL 3035
            TYN+AK  G V KCGFAW+VAG ALC  +     K   ++ +  SPS L  +L
Sbjct: 817  TYNHAKRQGAVGKCGFAWRVAGLALCTLYV---LKNQEERPLICSPSALKGIL 866


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  758 bits (1958), Expect = 0.0
 Identities = 426/886 (48%), Positives = 578/886 (65%), Gaps = 23/886 (2%)
 Frame = +3

Query: 453  SEQLLELSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFESYIWNKYGH 632
            S  L  L +LEFRK FLIL+YIGR  LE+ I    +  + DL   PM+ FE  IW  +G 
Sbjct: 120  SSLLHALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDL---PMAKFEKTIWEDFGE 176

Query: 633  HC--EDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFKGPYLKAERTHLQQSLGDENVLIVK 806
             C  + + R  + DW+SGRTH+Y C V  DG+  FKGP L++ RTHLQ++LGD+NVL+VK
Sbjct: 177  KCIYDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVK 236

Query: 807  FEE------------KAPRCPEEIVQNGILVGLRRYRFFVYXXXXXXXXXXXXXXXIDAV 950
            F E            +A     +  + GI VGLR YRFFV+                  V
Sbjct: 237  FAEDGSGKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTS--STV 294

Query: 951  KCYFVRMES-LNPCEKETYILHDKIVHEARCHFMHVHMV-SSMAKYMARFSLVLSTTVKL 1124
            KCYFVRM+S  +  E   YIL +K V EAR  FMH HM+  ++ KYMARFSL+LS T+KL
Sbjct: 295  KCYFVRMQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKL 354

Query: 1125 QVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCPQDFF---NV 1295
             +DL +V++ +I D YC D NG  + D + KP I TDGTG+IS DLA  CP + +   N+
Sbjct: 355  NIDLTTVSVQKIPDEYCKDANGNIMVDNE-KPRILTDGTGFISRDLALLCPNNVYKGSNL 413

Query: 1296 KHKCANSERYPNGVKLGENSYELGEAEFQSV-EPPLLMQCRLFYNGLAVKGTLLVNRKLP 1472
            ++ C   +   N V+L + S  +GEAE  S  EPPLL+QCRLF+ G A+KGTLLVNRKLP
Sbjct: 414  ENNCI--QEINNLVELEDMSNAMGEAEQLSTHEPPLLIQCRLFHMGHAIKGTLLVNRKLP 471

Query: 1473 QCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPTEYF 1652
              TIQ+RPSMIKVE DP +   Q  NSLE+ T S KP+  YLS+ LIALL++GGVP E+F
Sbjct: 472  PRTIQVRPSMIKVEKDPSV-HMQSINSLEVVTTSNKPKRGYLSKHLIALLSFGGVPNEFF 530

Query: 1653 FDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWCCLSSLA 1832
             D+L++ +E+   +YS++ +AL+ ++N  ++D+ + A  MI+ G+PL EP+L   LS  A
Sbjct: 531  MDLLRSNMEDANHVYSNKRSALRASINCGEKDEYN-AAEMILCGIPLDEPFLKHHLSRFA 589

Query: 1833 KEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGD 2012
            +EE+  L+GG+L + D FYLMGT DPT  L  ++VC+I E+ QI G+VLVYRNPGLHFGD
Sbjct: 590  REEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGD 649

Query: 2013 IHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYA 2192
            IH++ A  VK+L   VG++KYGIFF   G RS A EIA GDFDGD YWVS +PQLL+Y+ 
Sbjct: 650  IHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFR 709

Query: 2193 ANRPWSRLHSTPKTLHREPIDFSAEEREHELFQTFLETR-MPNYSMADASANWYALMDRL 2369
               PW        +  ++P +FS EE E ELF+ FL+TR  P+Y+M  +  +W ALMDRL
Sbjct: 710  KGDPWIENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRL 769

Query: 2370 LILGKNITTENEEMKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKE 2549
            L L  N T ENE+ + VKE + +LID+YY+A+DAPKSG KV +P  L  + FPH+++K +
Sbjct: 770  LTL-NNCTNENEK-ERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFPHYMEKDK 827

Query: 2550 CYHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFEVEISETCLRLWEERYRKYRFEMKEA 2729
             + STS+LG IYD VE +  E     EI +L  F+VE+  +CL  W+ +Y +YR +M +A
Sbjct: 828  SFTSTSILGLIYDEVEIW-LENDMVGEIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDA 886

Query: 2730 LNTSSESK-NDLANQVITKYKQLLY-EAPDMEDSVRSTSDIYNEALAIYRVTYNYAKAIG 2903
            LN   +SK ++ A +V  KYK+  Y    +ME  ++S  DI+NEALA+Y V+Y YA    
Sbjct: 887  LNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKK 946

Query: 2904 DVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKLLNL 3041
            +VK+CGFAWK+AGSAL R    L+  + N+K +   PSV+ ++  L
Sbjct: 947  EVKRCGFAWKIAGSALTR----LYIIKQNEKALNCDPSVVREIFRL 988


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  754 bits (1946), Expect = 0.0
 Identities = 429/878 (48%), Positives = 563/878 (64%), Gaps = 20/878 (2%)
 Frame = +3

Query: 462  LLELSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFESYIWNKYGHHCE 641
            L  L +LE+R+ FLIL+Y G  KL D+I+   +    DL   PM  FES +W   G  C 
Sbjct: 548  LAALGELEYRRQFLILSYAGGMKLRDLIVAEAIRHWKDL---PMVMFESTVWEHLGRKCI 604

Query: 642  DNK-RVQYLDWDSGRTHLYHCHVHLDGSYTFKGPYL-KAERTHLQQSLGDENVLIVKFEE 815
              + R  Y DWDSG TH+YHC+V++DGSY FKGPYL K  RT LQ+ LGD+NVL+VKF +
Sbjct: 605  STEDRRLYFDWDSGSTHVYHCYVNVDGSYRFKGPYLYKIRRTLLQKELGDDNVLMVKFAK 664

Query: 816  KAPRCPE-----------EIVQNGILVGLRRYRFFVYXXXXXXXXXXXXXXXIDAVKCYF 962
            +  +  +           ++ + GILVGLRRYRFFV+                  VKCYF
Sbjct: 665  EEVQRGQSGACHNYPTYMKVAREGILVGLRRYRFFVFKDGGNEEKKKNPTS--SPVKCYF 722

Query: 963  VRMESLNPCEKETYI-LHDKIVHEARCHFMHVHMVSSMAKYMARFSLVLSTTVKLQVDLN 1139
            VR+ S    +K  Y  L    ++EARC FMH H ++S+  YMARFSL+LS T+ L+ D +
Sbjct: 723  VRVASDAAIDKGVYYRLSHMTMYEARCLFMHAHTLASIDNYMARFSLILSKTMSLKADWS 782

Query: 1140 SVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCPQDFFNVKHKCANSE 1319
             V +  I++ YC D++G  +Y  D KPLIHTDGTG+ISEDLA  CP+     K +  + E
Sbjct: 783  LVKVEIIDEEYCLDESGNCIY-RDEKPLIHTDGTGFISEDLALLCPK--IEAKGQWISDE 839

Query: 1320 RYPNGVKLGENSYELGE--AEFQSVEPPLLMQCRLFYNGLAVKGTLLVNRKLPQCTIQIR 1493
             +  G+   +   + G+  A  ++ EPPLL+QCRLF+NG A KGTLLVN+KL    IQIR
Sbjct: 840  -HMKGLPDPDELDDTGKNRAGLRTEEPPLLIQCRLFHNGSASKGTLLVNKKLQPNRIQIR 898

Query: 1494 PSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPTEYFFDILKNT 1673
            PSM+KV+ DP +S  Q  NSLEI   S  PRNT+LSR LIALL +GGVP E+F  IL   
Sbjct: 899  PSMLKVKTDPVISNNQTLNSLEIVGTSTPPRNTHLSRILIALLVHGGVPEEFFMQILNKA 958

Query: 1674 LEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWCCLSSLAKEERNGL 1853
            LE++  ++  +  ALKVA  + + DD  +   MI  G+PL E YL   LS L KEE N L
Sbjct: 959  LEDSHGVFCKKRAALKVAEKYGEMDDNFLGRLMISFGIPLEESYLRYRLSVLMKEENNSL 1018

Query: 1854 KGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAV 2033
            + GRL I D++ LMGTADPT TL   EVC     GQ+ G+VLVYR PGLH GDIH L A 
Sbjct: 1019 RKGRLYIPDSYNLMGTADPTGTLKEDEVC----DGQLSGKVLVYRYPGLHIGDIHVLKAT 1074

Query: 2034 PVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYAANRPWSR 2213
             VK++  IVGNAKYGIFFS KGPRS A E+  GDFDGD YWVS+NPQLL++Y  + PW  
Sbjct: 1075 YVKEIEYIVGNAKYGIFFSCKGPRSIADEMGGGDFDGDLYWVSRNPQLLEWYKPSEPWIE 1134

Query: 2214 LH-STPKTLHREPIDFSAEEREHELFQTFLETRM-PNYSMADASANWYALMDRLLILGKN 2387
               ST K   R P D S E+ E  LF++FL TR  P+++M++A+ NW A MD  L LG  
Sbjct: 1135 ASISTKKNPSRCPSDHSPEDLEDVLFRSFLTTRFEPSFAMSEAADNWLAWMDHFLTLG-- 1192

Query: 2388 ITTENEEMKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKECYHSTS 2567
              +   E  +VKEK+ +L+DLYY A+DA K G KV +PK LKV  FPH++ K   Y STS
Sbjct: 1193 -DSNIHEKNNVKEKILQLVDLYYTALDAAKKGVKVDVPKELKVSCFPHYMGKNRSYPSTS 1251

Query: 2568 VLGEIYDRVEEFKAEEPTAVEIKELSAF-EVEISETCLRLWEERYRKYRFEMKEAL-NTS 2741
            +LG IY+RV+E + E+ +  E+++L AF E E+ + CL  W E +R+YR EM  AL +  
Sbjct: 1252 ILGSIYNRVDEHQTEDRSLKEVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALDDDD 1311

Query: 2742 SESKNDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTYNYAKAIGDVKKCG 2921
             +SKN  A+ VI KY+++LYEA D E+S R   +IYNEA AIY V Y++AK +G+VK C 
Sbjct: 1312 KQSKNQSADVVIRKYRKILYEANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVKVCS 1371

Query: 2922 FAWKVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKLL 3035
            FAW+VAG ALC    +LHA+ +N++   +  SVL ++L
Sbjct: 1372 FAWRVAGKALC----QLHARNNNERFCTIVSSVLMEIL 1405


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  753 bits (1945), Expect = 0.0
 Identities = 416/874 (47%), Positives = 557/874 (63%), Gaps = 16/874 (1%)
 Frame = +3

Query: 459  QLLELSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFESYIWNKYGH-H 635
            QL+ L +LEF+K FL+L+YI  ++L  V    ++    DL   PM  +E+ +W++ G  +
Sbjct: 140  QLVALGELEFKKAFLLLSYIPGQQLGQVTTADEIRLWKDL---PMVAYEAAVWDRLGRRY 196

Query: 636  CEDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFKGPYLKAERTHLQQSLGDENVLIVKFEE 815
            C    R + L WDSG+TH Y CHV  DGSYTFKGP L+   THL + LGDENVL VKF +
Sbjct: 197  CPQTDR-RMLQWDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKFAD 255

Query: 816  KAPRCP----------EEIVQNGILVGLRRYRFFVYXXXXXXXXXXXXXXXIDAVKCYFV 965
                            +EI +NGI++GLRRY+FFV+                  VKCYF+
Sbjct: 256  VPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTK--KVKCYFI 313

Query: 966  RMESLNPCEKET-YILHDKIVHEARCHFMHVHMVSSMAKYMARFSLVLSTTVKLQVDLNS 1142
            R +S   C+ E  YI   K +HEAR HFMHVH   ++A YMARFSL+LS T  L+VD+  
Sbjct: 314  RTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTG 373

Query: 1143 VNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCPQDFFNVKHKCANSER 1322
            +    I+D++CHD++G  + D++ KP IH+DGTGYISEDLAR CP + F  K KC  SE 
Sbjct: 374  ITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIF--KGKCLRSEN 431

Query: 1323 YPNGVKLGENSYELGEAEFQSVEPPLLMQCRLFYNGLAVKGTLLVNRKLPQCTIQIRPSM 1502
                             E  + +PPLL+Q R+FY+G AVKGT L+N+KL   T+Q+RPSM
Sbjct: 432  IQ---------------EACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSM 476

Query: 1503 IKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPTEYFFDILKNTLEE 1682
            IKV  DP LS    FN+LE+ T S  PR T LS+ L+ALL+YGG+P E+F DIL NTLEE
Sbjct: 477  IKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLEE 536

Query: 1683 TQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGG 1862
            ++ ++ ++  AL VA+N+ + DD + A  MI+ G+PL EP+L   LS L K E+N LK G
Sbjct: 537  SKSIFYNKHAALNVALNYGEMDDQN-AAQMILVGIPLDEPHLKNHLSILLKTEKNDLKAG 595

Query: 1863 RLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVK 2042
            RLP+++++YLMGT DPT  L   EVCVILE GQI GEVLVYRNPGLHFGDIH L A  VK
Sbjct: 596  RLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHILKATYVK 655

Query: 2043 KLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYAANRPWSRLHS 2222
             L + VGN+KY +FF  KGPRS   EIA GDFDGD Y++S+NP+LL+++  + PW  L  
Sbjct: 656  ALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPWVSLTP 715

Query: 2223 TPKT-LHREPIDFSAEEREHELFQTFLETRMPNYSMADASA-NWYALMDRLLILGKNITT 2396
              K+   R P   S EE E ELF+ FL+      ++   +A +W  +MDRLLILG     
Sbjct: 716  PSKSNSGRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLILGDERAE 775

Query: 2397 ENEEMKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKECYHSTSVLG 2576
            E  EM   K+K+ +LID+YYDA+DAPK G+KVY+P  L+ D FPH++++++ + STS+LG
Sbjct: 776  EKAEM---KKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMEREKKFKSTSILG 832

Query: 2577 EIYDRVEEFKAEEPT-AVEIKELSAFEVE-ISETCLRLWEERYRKYRFEMKEALNTSSES 2750
             IYD V+    EEPT + EI +L  FE E +SE  +      Y  YR EM +A+ T    
Sbjct: 833  LIYDFVKSQTTEEPTPSSEISKLPCFEDEPVSEFHMEKCRRWYDNYRSEMTQAMKT---D 889

Query: 2751 KNDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTYNYAKAIGDVKKCGFAW 2930
            K++ AN+VI +YKQ  Y A   EDS +S  ++Y +AL +Y++ Y+YA   G V KCGF W
Sbjct: 890  KDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIHAG-VSKCGFVW 948

Query: 2931 KVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKL 3032
            KVAG  LCRF+     K+  +K +  +PSVL +L
Sbjct: 949  KVAGPVLCRFYL---MKKMQEKSLVCAPSVLKEL 979


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  749 bits (1935), Expect = 0.0
 Identities = 454/1025 (44%), Positives = 610/1025 (59%), Gaps = 21/1025 (2%)
 Frame = +3

Query: 21   LNTIGEECSLDILRKISKCEIRKTLGGFIVFMAKKYYGLETQQFYSQQQEVASAESFYHS 200
            L ++GE  +LD L KIS C   + L GFI+ + +K      Q   ++   V+  +S   S
Sbjct: 88   LASVGEVAALDALHKIS-CSTVRNLSGFILHLVRKDSCASPQ---NKMVRVSPHQSPSSS 143

Query: 201  PKIHRIXXXXXXXXXXXXXXXPRNTPIFQGTGHDNDIVGDVSDSPTSVPQIPSPPMSPAT 380
              + ++                 +    QG G             T+      PP    +
Sbjct: 144  CPVSQLQSPSTCSVSLHQSPSTFSVCSGQGLG-------------TAENASLQPPTPEKS 190

Query: 381  TSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKLEDVIMLHDV 560
             SF         S   DRA       Q + L +LEFRK  L+      +K   ++  + V
Sbjct: 191  GSFS--------SSVLDRARI----SQFVALGELEFRKITLL------KKRPWLLYGNQV 232

Query: 561  GDILDLIYQPMSHFESYIWNKYGHHCEDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFKGP 740
               L      ++H ES            +  VQY+DWD  +TH+YHCHV LDGS  FKGP
Sbjct: 233  ERWLGWELVSVTHSESL----------PSYLVQYVDWDRRKTHIYHCHVALDGSCRFKGP 282

Query: 741  YLKAERTHLQQSLGDENVLIVKFEEKAPRCP------------EEIVQNGILVGLRRYRF 884
            +L   +THLQ+ LGD+NVL+VKF E     P             +I ++GIL+GLRRY F
Sbjct: 283  FLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHF 342

Query: 885  FVYXXXXXXXXXXXXXXXIDAVKCYFVRMESLNPCEK-ETYILHDKIVHEARCHFMHVHM 1061
            FV+                 AVKCYFVRMES    +K E Y L ++ V EAR  FMH HM
Sbjct: 343  FVFKDGGKEEKKKNPTT--SAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHM 400

Query: 1062 VSSMAKYMARFSLVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGT 1241
            VSS+A YMARFSL+LS T+ L++DL++VN+ RI D+ C D  G  +Y  DGKPLIHTDGT
Sbjct: 401  VSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIY-RDGKPLIHTDGT 459

Query: 1242 GYISEDLARRCPQDFFN--VKHKC---ANSERYPNGVKLGENSYELGEAEFQSVEPPLLM 1406
            G+ISEDLA  CP + F    KH     A  +R P        + +L     +  EPPLL+
Sbjct: 460  GFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLI 519

Query: 1407 QCRLFYNGLAVKGTLLVNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPR 1586
            Q RLFYNGLAVKGT L+N++LP  TIQIR SMIKVE DP L   +  NSLE+   S  P+
Sbjct: 520  QFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPK 579

Query: 1587 NTYLSRTLIALLTYGGVPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIAT 1766
             T+LSR LIALL YGGVP EYF +IL + L++ Q ++S +  AL+V++N+ + DD  +A 
Sbjct: 580  RTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMDDFLVAR 639

Query: 1767 SMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVI 1946
             MI+AG+PL E YL   LS L KEE+  LK GRL + + +YLMGT DPT TL   EVCVI
Sbjct: 640  -MILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVI 698

Query: 1947 LEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIA 2126
            L +GQI G+VLVYRNPGLHFGDIH L A  V+KL  +VGNAKY IFFS+KGPRS A EIA
Sbjct: 699  LYNGQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIA 758

Query: 2127 NGDFDGDKYWVSQNPQLLKYYAANRPWSRLHSTPKTLHREPIDFSAEEREHELFQTFLET 2306
             GDFDGD YWVS+N QLL+Y+    PW    ST    +++P +FSA+E E+ELF+ FL T
Sbjct: 759  GGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLST 818

Query: 2307 R-MPNYSMADASANWYALMDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAP-KS 2480
            R  P+Y+ + A+ NW ALMD+ L+LG+      EE   ++ K+ +LI++YYDA+DAP K 
Sbjct: 819  RFQPSYAKSVAADNWLALMDQFLMLGEE---RKEERNCIRAKILQLINIYYDALDAPKKG 875

Query: 2481 GNKVYIPKRLKVDKFPHFLQK-KECYHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFEV 2657
            G K+ +PK LK    PHF+++ K  Y STS+LG+I+D    ++ E P  +E+++L  FE 
Sbjct: 876  GKKIEVPKHLKAGTLPHFMERGKNSYVSTSILGQIFDTANMYQEEVPN-IEVQKLPCFEE 934

Query: 2658 EISETCLRLWEERYRKYRFEMKEALNTSSESKNDLANQVITKYKQLLYEAPDMEDSVRST 2837
            E+ E     W+  Y  YR +M +A+    ++KN  A   I KYK++LY A ++E S RS 
Sbjct: 935  ELPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSN 994

Query: 2838 SDIYNEALAIYRVTYNYAKAIGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAVSPS 3017
             ++Y EALAIY+VTY++A +   V+ CGFAWKVAGSAL +    L+A +H+++     PS
Sbjct: 995  EEVYQEALAIYQVTYDHAMS-RSVRNCGFAWKVAGSALFK----LYAIKHSERSFHCLPS 1049

Query: 3018 VLHKL 3032
            V+ ++
Sbjct: 1050 VMREI 1054


>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
            gi|482565615|gb|EOA29804.1| hypothetical protein
            CARUB_v10012898mg [Capsella rubella]
          Length = 982

 Score =  739 bits (1908), Expect = 0.0
 Identities = 404/873 (46%), Positives = 554/873 (63%), Gaps = 15/873 (1%)
 Frame = +3

Query: 459  QLLELSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFESYIWNKYGHHC 638
            QL+ L +LEF+K FL+L+YI  ++L +V+   ++    DL   PM  +E+ +W+  G   
Sbjct: 144  QLVALGELEFKKAFLLLSYIPGQRLGEVVTAEEIRRWKDL---PMVAYEAAVWDSLGRKF 200

Query: 639  EDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFKGPYLKAERTHLQQSLGDENVLIVKF--- 809
                  + L WDSG+TH Y CHV  DGSYTFKGP L++  THL + LGDENVL VKF   
Sbjct: 201  CPQTDERVLQWDSGKTHYYQCHVAPDGSYTFKGPLLESTGTHLHKVLGDENVLTVKFANV 260

Query: 810  -EEKAPRCPEE------IVQNGILVGLRRYRFFVYXXXXXXXXXXXXXXXIDAVKCYFVR 968
             +  +  C +       I +NGI+VGLRRY+FFV+                   KCYF+R
Sbjct: 261  QKNSSTYCSDSYFTYKGIAKNGIMVGLRRYKFFVFKDGGKDDKNKDVSTK--RAKCYFIR 318

Query: 969  MESLNPCEKET-YILHDKIVHEARCHFMHVHMVSSMAKYMARFSLVLSTTVKLQVDLNSV 1145
             +S    + E  YI   K +HEAR HFMHVH + S+A YMARFSL+LS T KL+VDL  V
Sbjct: 319  TDSTASIDMEKPYIFSGKSIHEARMHFMHVHTLPSLANYMARFSLILSKTKKLEVDLTGV 378

Query: 1146 NIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCPQDFFNVKHKCANSERY 1325
            N   I+D+ CHD++G  + D++ KP IH+DGTGYISEDLA+ CP + +  K KC  S++ 
Sbjct: 379  NFEIIKDIPCHDQDGKDVLDKNKKPRIHSDGTGYISEDLAQMCPVNIY--KGKCLRSDKI 436

Query: 1326 PNGVKLGENSYELGEAEFQSVEPPLLMQCRLFYNGLAVKGTLLVNRKLPQCTIQIRPSMI 1505
                            E    EPPLL+Q R+FYNG A+KGT L+N+K+P  T+Q+RPSMI
Sbjct: 437  K---------------EACGQEPPLLIQFRMFYNGYAIKGTFLLNKKIPSRTVQVRPSMI 481

Query: 1506 KVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPTEYFFDILKNTLEET 1685
            KV  D  L     FN+LE+   S  P+ T LSR L+ALL+YGG+P E+F DIL NTLEE+
Sbjct: 482  KVLPD-SLPNISTFNTLEVVNTSFPPKRTKLSRNLVALLSYGGIPDEFFLDILHNTLEES 540

Query: 1686 QRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGR 1865
            + ++ ++  AL  A+++ + DD + A  MI+AG+PL EP+L  CLSS  K E+N LK GR
Sbjct: 541  KAIFYNKRAALNAALSYGEMDDQN-AAQMILAGIPLDEPHLKTCLSSFLKREKNDLKAGR 599

Query: 1866 LPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKK 2045
            LP+++++YLMGT DPT  L   EVCVILE GQI GEVLVYRNPGLHFGDIH L A  VK 
Sbjct: 600  LPVTESYYLMGTVDPTGELKEDEVCVILESGQISGEVLVYRNPGLHFGDIHVLKATYVKA 659

Query: 2046 LRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYAANRPWSRLHST 2225
            L + VGN+K+ +FF  KGPRS   EIA GDFDGD Y++S+NP+LL+++  + PW  L   
Sbjct: 660  LEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDIYFISRNPELLEHFKPSEPWVSLTPP 719

Query: 2226 PKT-LHREPIDFSAEEREHELFQTFLETRMPNYSMADASA-NWYALMDRLLILGKNITTE 2399
             K+   R P  FS EE E ELF+ FL+      ++   +A +W  +MDR LILG     E
Sbjct: 720  SKSNSARGPCQFSPEELEEELFEMFLKAGFHASNVIGMAADSWLTIMDRFLILGDESADE 779

Query: 2400 NEEMKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKECYHSTSVLGE 2579
              EM   K+K+ ELID+YYDA+DAPK G KVY+P  L+ D FPH++++ + + STS+LG 
Sbjct: 780  KAEM---KQKMLELIDIYYDALDAPKKGAKVYLPNELRPDIFPHYMERDKKFKSTSILGL 836

Query: 2580 IYDRVEEFKAEEPT-AVEIKELSAFEVE-ISETCLRLWEERYRKYRFEMKEALNTSSESK 2753
            IYD V+    ++P+   EI +L  FE E +SE  ++     Y +Y+ EM  A+NT + +K
Sbjct: 837  IYDFVQSQTTKQPSPPSEINKLPCFEDEPVSEFHMKECRRWYDEYKDEMTHAMNTDASNK 896

Query: 2754 NDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTYNYAKAIGDVKKCGFAWK 2933
                N++I + K+  Y A   E+S +S  ++Y +ALA+Y + Y++A   G V +CGF WK
Sbjct: 897  ----NEIIERCKEDFYGAASFEESKKSLEELYPQALALYNIVYDHATHAG-VSRCGFVWK 951

Query: 2934 VAGSALCRFHAELHAKEHNQKVMAVSPSVLHKL 3032
            VAG  LCRF    + K+ ++K +  SPSVL ++
Sbjct: 952  VAGPVLCRF----YLKKRHEKTLVSSPSVLKEI 980


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  737 bits (1903), Expect = 0.0
 Identities = 412/878 (46%), Positives = 556/878 (63%), Gaps = 17/878 (1%)
 Frame = +3

Query: 450  ISEQLLELSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFESYIWNKYG 629
            I  Q+L LS+LEF+K FL+L+Y   + L +V+   ++    DL   PM  +E+ +W++  
Sbjct: 144  IPPQILALSELEFKKAFLLLSYFPGQSLAEVLSADEIRQWKDL---PMVAYEAAVWDRLS 200

Query: 630  HHCEDNKRVQY--LDWDSGRTHLYHCHVHLDGSYTFKGPYLKAERTHLQQSLGDENVLIV 803
               E ++ V+   L+WDS +TH Y CHV  DGSYTFKGP L+   THL + LGDENVL V
Sbjct: 201  R-LELSQTVERVSLEWDSEKTHYYQCHVASDGSYTFKGPLLEPTGTHLHKVLGDENVLTV 259

Query: 804  KFEEKAPRCP----------EEIVQNGILVGLRRYRFFVYXXXXXXXXXXXXXXXIDAVK 953
            KF +                + I +NGI+VGLRRY+FFV+                + VK
Sbjct: 260  KFADVQKNSSTYSNDRYSAYKRIAKNGIMVGLRRYQFFVFKDVGKAEKKKDFST--NGVK 317

Query: 954  CYFVRMESLNPCEK-ETYILHDKIVHEARCHFMHVHMVSSMAKYMARFSLVLSTTVKLQV 1130
            CYF+R +S    +  + YI   K ++EAR HFMHVH + S+AKYMARFSL+LS T KL+V
Sbjct: 318  CYFIRTDSTAANDMGKAYIFSGKTINEARMHFMHVHTLPSLAKYMARFSLILSKTKKLEV 377

Query: 1131 DLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCPQDFFNVKHKCA 1310
            D+  +    I++++CHD+N   + D++ +P +H+DGTGYISEDLAR CP + F  K KC 
Sbjct: 378  DMTGITYQEIKEIHCHDQNNNVVLDKNKEPRMHSDGTGYISEDLARMCPVNIF--KGKCL 435

Query: 1311 NSERYPNGVKLGENSYELGEAEFQSVEPPLLMQCRLFYNGLAVKGTLLVNRKLPQCTIQI 1490
            + +                  E    +PPLL+Q R+FY+G AVKGT L+N+KLP  T+Q+
Sbjct: 436  SKKNIQ---------------ESCGQDPPLLIQFRMFYDGNAVKGTFLLNKKLPDRTVQV 480

Query: 1491 RPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPTEYFFDILKN 1670
            RPSMIKV  D  LS    FNSLE+ T S  P+ T LSR L+ALL+YGGVP E+F D+L N
Sbjct: 481  RPSMIKVSKDRALSNFSTFNSLEVVTTSNPPKRTKLSRNLVALLSYGGVPNEFFLDLLLN 540

Query: 1671 TLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWCCLSSLAKEERNG 1850
            T+EET+ +++++  ALK A+NH D DD + A  MI+ G+PL EP+L   LS L+  E+N 
Sbjct: 541  TMEETKTIFNNKRAALKAALNHGDMDDQN-AAQMILVGIPLDEPHLKDRLSILSNIEKND 599

Query: 1851 LKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLA 2030
            LK GRLP+++++YLMGT DPT  L   EVCVILE GQI G+VLVYRNPG+HFGDIH L A
Sbjct: 600  LKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQISGDVLVYRNPGVHFGDIHVLKA 659

Query: 2031 VPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYAANRPWS 2210
              VK L + VGN+KY +FF  KGPRS   EIA GDFDGD Y++S+NP+LL+ +  + PW 
Sbjct: 660  TYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEQFKPSEPWV 719

Query: 2211 RLHSTPKT-LHREPIDFSAEEREHELFQTFLETRMPNYSMADASA-NWYALMDRLLILGK 2384
             L    K+   R+PIDFS EE E ELF  FL+ R  + ++   +A +W  +MDR L LG 
Sbjct: 720  SLSPPSKSNSTRKPIDFSPEELEEELFDMFLKARFHSSNVIGMAADSWLTIMDRFLTLGD 779

Query: 2385 NITTENEEMKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKECYHST 2564
                E  EM   K K+  LID+YYDA+DA K G KV +P  LK D FPH++++ + + ST
Sbjct: 780  ERAEEKAEM---KRKMLSLIDIYYDALDAAKKGVKVSLPDALKPDIFPHYMERDKKFKST 836

Query: 2565 SVLGEIYDRVEEFKAEEPT-AVEIKELSAFEVE-ISETCLRLWEERYRKYRFEMKEALNT 2738
            S+LG IYD V+   AEE T + EI +L  FE E +SE         Y  YR EM +AL+ 
Sbjct: 837  SILGIIYDFVQSQTAEEHTPSSEISKLQCFEDEPVSEFHKEKCRPWYDNYRAEMIQALS- 895

Query: 2739 SSESKNDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTYNYAKAIGDVKKC 2918
               +K+D A++VI KYKQ  Y A   EDS +S  ++Y +ALA+Y + Y+YA  +  V+KC
Sbjct: 896  ---NKDDTASEVIEKYKQEFYGAAGFEDSKKSLEELYPQALALYNIVYDYAIEMKSVRKC 952

Query: 2919 GFAWKVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKL 3032
            GFAWKVAG  LCRF    + K+   K +  S S+L +L
Sbjct: 953  GFAWKVAGPVLCRF----YLKKTGGKALLCSLSMLKEL 986


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  731 bits (1887), Expect = 0.0
 Identities = 425/947 (44%), Positives = 583/947 (61%), Gaps = 36/947 (3%)
 Frame = +3

Query: 300  DNDIVGDVSD--SPTSVPQIPSPPMSPATTSFQRYFYD----------PGQSEFRDRAST 443
            D+ IV  V+   S T  PQ P+  +SP+     R   +          P   +  D+  +
Sbjct: 67   DSFIVSKVNQAVSFTGYPQ-PANSLSPSGRHVSRVLQEEMSVDSDAPSPKSLKSEDKGGS 125

Query: 444  RGISEQLLELSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFESYIWNK 623
              I  QL+ L +LEF+K FL+L+YI  + +  VI   ++    DL   PM  +E+ +W++
Sbjct: 126  LHIP-QLVALGELEFKKVFLLLSYIPGQHVGQVITADEIRLWKDL---PMVEYEAAVWDR 181

Query: 624  YGHHCEDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFK------GPYLKAERTHLQQSLGD 785
             G H    K  + L WDSG+TH Y C+V  +GSYTFK      GP L+   THL + LGD
Sbjct: 182  LGRHYCPQKDRRMLQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGD 241

Query: 786  ENVLIVKFEEKAPRCP----------EEIVQNGILVGLRRYRFFVYXXXXXXXXXXXXXX 935
            +NVL VKF +                + I +NGI++GLRRY+FFV+              
Sbjct: 242  DNVLTVKFADVQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLST 301

Query: 936  XIDAVKCYFVRMESLNPCEKET-YILHDKIVHEARCHFMHVHMVSSMAKYMARFSLVLST 1112
                VKCYF+R +S    + +  YIL  K ++EAR HFMHVH   ++A YMARFSL+LS 
Sbjct: 302  K--KVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSK 359

Query: 1113 TVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCPQDFFN 1292
            T  L+VD+  +   +I+D++CHD++G  + D++ KP IH+DGTGYISEDLAR CP + F 
Sbjct: 360  TKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIF- 418

Query: 1293 VKHKCANSERYPNGVKLGENSYELGEAEFQSVEPPLLMQCRLFYNGLAVKGTLLVNRKLP 1472
             K KC  SE              + EA +Q  +PPLL+Q R+FY+G AVKGT L+N+KL 
Sbjct: 419  -KGKCLRSE-------------SIQEACYQ--DPPLLIQFRMFYDGYAVKGTFLLNKKLC 462

Query: 1473 QCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPTEYF 1652
              T+Q+RPSMIKV  DP LS    FN+LE+ T S  P+ T LS+ L+ALL+YGG+P E+F
Sbjct: 463  PRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFF 522

Query: 1653 FDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWCCLSSLA 1832
             DIL NTLEE++ ++ ++  AL  A+N+ + DD + A  MI+ G+PL EP+L   LS L 
Sbjct: 523  LDILLNTLEESKSIFYNKRAALNAALNYGEMDDQN-AAQMILVGIPLDEPHLKNYLSILL 581

Query: 1833 KEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGD 2012
            K E+N LK G+LP+++++YLMGT DPT  L   EVCVILE GQI GEVLVYRNPGLHFGD
Sbjct: 582  KTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILESGQISGEVLVYRNPGLHFGD 641

Query: 2013 IHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYA 2192
            IH L A  VK L + VGN+K+ +FF  KGPRS   EIA GDFDGD Y++S+NP+LL+ + 
Sbjct: 642  IHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFK 701

Query: 2193 ANRPWSRLHSTPKT-LHREPIDFSAEEREHELFQTFLETRMPNYSMADASA-NWYALMDR 2366
             + PW  L    K+   R P   S EE E ELF+ FL       ++   +A +W  +MDR
Sbjct: 702  PSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDR 761

Query: 2367 LLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKK 2546
             LILG +   E  EM   K+K+ ELID+YYDA+DAPK G+KVY+P +LK D FPH++++ 
Sbjct: 762  FLILGDDRAEEKAEM---KKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERD 818

Query: 2547 ECYHSTSVLGEIYDRVEEFKAEEPT-AVEIKELSAFEVE-ISETCL---RLWEERYRKYR 2711
            + + STS+LG I+D V+    EEP+ + EI +L  FE E +SE  +   RLW   Y  YR
Sbjct: 819  KKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLW---YDNYR 875

Query: 2712 FEMKEALNTSSESKNDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTYNYA 2891
             EM +A+ T    K++ AN+VI +YKQ  Y A   EDS +S  ++Y +ALA+Y++ Y+YA
Sbjct: 876  TEMTQAMKT---DKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYA 932

Query: 2892 KAIGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKL 3032
               G V KC F WKVAG  LCRF+     K+  +K +  +PSVL +L
Sbjct: 933  IHAG-VSKCRFVWKVAGPVLCRFYLN---KKMQEKCLVCAPSVLKEL 975


>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
            gi|548857326|gb|ERN15132.1| hypothetical protein
            AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  728 bits (1880), Expect = 0.0
 Identities = 406/886 (45%), Positives = 556/886 (62%), Gaps = 18/886 (2%)
 Frame = +3

Query: 432  RASTRGISEQLLE--LSKLEFRKFFLILNYIGRRKLEDVIMLHDVGDILDLIYQPMSHFE 605
            R +T G +E      L +LEFRK FLILNYIG+++++DV+ +  +    DL    M  FE
Sbjct: 116  RCNTYGSNEFQFRKALGELEFRKAFLILNYIGKQRIDDVLSIEKIRTWKDL---SMQCFE 172

Query: 606  SYIWNKYGHHCEDNKRVQYLDWDSGRTHLYHCHVHLDGSYTFKGPYLKAERTHLQQSLGD 785
              +W   G         + LDWDSG+   Y CHV   G+++FKGP+L++ +THL++ LGD
Sbjct: 173  YEVWRTVGERYASQTDRRNLDWDSGKAENYQCHVDPVGNFSFKGPFLESTQTHLRRVLGD 232

Query: 786  ENVLIVKFEE-------------KAPRCPEEIVQNGILVGLRRYRFFVYXXXXXXXXXXX 926
            + VL VKF E             ++      I ++GILVGLRRY FFV+           
Sbjct: 233  DKVLTVKFAEEMVDERRGEFNLSRSKNIFRRIAKDGILVGLRRYHFFVFKDGGKEEKRKN 292

Query: 927  XXXXIDAVKCYFVRMESLNPCEKET-YILHDKIVHEARCHFMHVHMVSSMAKYMARFSLV 1103
                   VKCYFV M+S    +  T YIL +K + EAR  FM VH V ++AKYMARFSL+
Sbjct: 293  ANTT--GVKCYFVCMKSDAESDMHTPYILSNKTIQEARSMFMDVHTVPNLAKYMARFSLI 350

Query: 1104 LSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIHTDGTGYISEDLARRCPQD 1283
            LS T+KL+VDL SVNI RI D  C D +   +YD++G+ LIHTDGTG+ISEDL  +  ++
Sbjct: 351  LSKTIKLEVDLGSVNIERINDKPCLDNHNEIVYDQNGQCLIHTDGTGFISEDLMSKFSKN 410

Query: 1284 FFNVKH-KCANSERYPNGVKLGENSYELGEAEFQSVEPPLLMQCRLFYNGLAVKGTLLVN 1460
             F  ++ K    E   NG++L   S    E ++ S +  LL+Q RLFY+G AVKGT+LVN
Sbjct: 411  IFKERYLKQKKVETCLNGMELNAKSVLDEEIKYVSGDLHLLIQFRLFYDGCAVKGTVLVN 470

Query: 1461 RKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVP 1640
            + LP  TIQ+RPSM+KVE D   SR   FNS E+   S +PR   LSR LI LL++GGVP
Sbjct: 471  KLLPPNTIQVRPSMVKVERDTDFSRLPSFNSFEMVGTSNRPRGAALSRYLITLLSHGGVP 530

Query: 1641 TEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATSMIMAGVPLTEPYLWCCL 1820
               F  +++  L++ Q +   +  AL  AV +++  D  +   MI  G+PL EPYL   L
Sbjct: 531  KSCFMFLIQAALDDVQNVRYSKKLALTAAVKYQEISDNLLVARMIFCGLPLEEPYLQHRL 590

Query: 1821 SSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGL 2000
            S L KEER GLK G++ + +++YLMGTADPT  L  +EVC+IL+HGQI G+VLVYR+PGL
Sbjct: 591  SILMKEERKGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCIILDHGQISGKVLVYRHPGL 650

Query: 2001 HFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLL 2180
            HFGDIH   A  ++ L +IVGNAK+ IFFST+GPRSAA EIANGDFDGD YW+S NP+LL
Sbjct: 651  HFGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRSAADEIANGDFDGDMYWISTNPELL 710

Query: 2181 KYYAANRPWSRLHSTPKTLHREPIDFSAEEREHELFQTFLETRM-PNYSMADASANWYAL 2357
             Y+ A  PW R  S      R+PI++S +E E ELF  FLE+R  P+ +   A+ +W   
Sbjct: 711  HYFKAGPPWERSSSEKPPPQRKPIEYSPDELETELFDLFLESRFHPSIAKCAAADSWLVY 770

Query: 2358 MDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFL 2537
            MDRLL LG       EE   + +K+ +L DLYY+A+DAPKSG KV +PK LK +++PHF+
Sbjct: 771  MDRLLTLGDECA---EEKGCLHQKMLKLADLYYEAVDAPKSGKKVEVPKDLKPERYPHFM 827

Query: 2538 QKKECYHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFEVEISETCLRLWEERYRKYRFE 2717
            ++   Y STS+LG+IYD V   + + P   +I+ L  F  E+  + +  W+  Y +YR E
Sbjct: 828  ERTYQYTSTSILGQIYDLVASAQMDVP-CEDIELLPCFLEEVEPSGMEKWKGLYAQYRDE 886

Query: 2718 MKEALNTSSESKNDLANQVITKYKQLLYEAPDMEDSVRSTSDIYNEALAIYRVTYNYAKA 2897
            M +AL+++ + K++ A++VI  YK++LY A + E+  R   +I+ EA  IY ++Y YAK 
Sbjct: 887  MNKALSSTDQKKSN-ADEVIQNYKKILYGAQEYEERTRPREEIFREACEIYAISYFYAKE 945

Query: 2898 IGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAVSPSVLHKLL 3035
              D+ KCGFAWKVAG ALC    ELHA +  +  +    SVL +LL
Sbjct: 946  KSDIAKCGFAWKVAGCALC----ELHALKQKKNSITCLSSVLQELL 987


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  719 bits (1857), Expect = 0.0
 Identities = 433/1029 (42%), Positives = 587/1029 (57%), Gaps = 19/1029 (1%)
 Frame = +3

Query: 6    KVRGILNTIGEECSLDILRKISKCEIRKTLGGFIVFMAKKYYGLETQQFYSQQQEVASAE 185
            + R  L++I EE +L+ LRK+      KTL G I++  K    ++          ++  E
Sbjct: 41   ETRRKLSSISEELALETLRKVFNKPYLKTLDGLIMYFVKGTVTVDGSP------RLSPGE 94

Query: 186  SFYHSPKIHRIXXXXXXXXXXXXXXXPRNTPIFQGTGHDNDIVGDVSDSPTSVPQIPSPP 365
            S   SP+                      TP  +      D+  D+        + PSP 
Sbjct: 95   SPVQSPR----------------------TPAKKSCRASQDVSLDL--------ETPSPK 124

Query: 366  MSPATTSFQRYFYDPGQSEFRDRASTRGISEQLLELSKLEFRKFFLILNYIGRRKL-EDV 542
                  +    +  P                 LL L +LEF+K FL+L+YIG   L E+V
Sbjct: 125  FMKREENGGSKYIPP-----------------LLALGELEFKKAFLLLSYIGGESLVEEV 167

Query: 543  IMLHDVGDILDLIYQPMSHFESYIWNKYGH-HCEDNKRVQYLDWDSGRTHLYHCHVHLDG 719
            I    +    DL   PM  +E+ +WN+ G  +C   +R + L+ DSG TH Y CHV  DG
Sbjct: 168  ISGDQIRKWKDL---PMVSYEAAVWNRLGQRYCSPKERRRPLEGDSGMTHYYQCHVATDG 224

Query: 720  SYTFKGPYLKAERTHLQQSLGDENVLIVKFEEKA---PRCPE------EIVQNGILVGLR 872
            SY FKG  L+   THL + LGD+NVL VKF++       C +       I +NGI+VGLR
Sbjct: 225  SYKFKGHLLENTGTHLHKVLGDDNVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLR 284

Query: 873  RYRFFVYXXXXXXXXXXXXXXXIDAVKCYFVRMESLNPCEKET-YILHDKIVHEARCHFM 1049
            RYRFFV+                  VKCYF+R +S    + +  YI   K +HEAR HFM
Sbjct: 285  RYRFFVFKDGGKEEKKKDVSTK--GVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMHFM 342

Query: 1050 HVHMVSSMAKYMARFSLVLSTTVKLQVDLNSVNIVRIEDMYCHDKNGCTLYDEDGKPLIH 1229
            HV+ +SS+  YM+RFSL+LS T  L+VD+  +   +I+D++CHD++   + D++GKP IH
Sbjct: 343  HVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIH 402

Query: 1230 TDGTGYISEDLARRCPQDFFNVKHKCANSERYPNGVKLGENSYELGEAEFQSVEPPLLMQ 1409
            +DGTGYISEDLAR CP + F  K   +N+ +  N    G+             EPPLL+Q
Sbjct: 403  SDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPC--------GQEPPLLIQ 454

Query: 1410 CRLFYNGLAVKGTLLVNRKLPQCTIQIRPSMIKVEADPKLSRAQMFNSLEINTPSLKPRN 1589
             R+FYNG AVKGT L N+KLP  T+Q+RPSMIKV  D  LS    FNSLE+ T S  PR 
Sbjct: 455  FRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRK 514

Query: 1590 TYLSRTLIALLTYGGVPTEYFFDILKNTLEETQRLYSDEVTALKVAVNHRDRDDASIATS 1769
              LSR L+ALL+YGGVP ++F +IL+NTLEE++ ++  E  A K A+N+    D      
Sbjct: 515  ARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINY---GDDQYTAD 571

Query: 1770 MIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPISDTFYLMGTADPTDTLNPHEVCVIL 1949
            MI+ G+PL EPYL   LS L K ERN LK GR PI +++Y+MGT DPT  L  +E+CVIL
Sbjct: 572  MILVGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVIL 631

Query: 1950 EHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKKLRDIVGNAKYGIFFSTKGPRSAATEIAN 2129
              GQI G+VLVYRNPGLHFGDIH L A  VK L D VGNAK+ +FF  KGPRS   EIA 
Sbjct: 632  HSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAG 691

Query: 2130 GDFDGDKYWVSQNPQLLKYYAANRPWSRLHSTPKTLH--REPIDFSAEEREHELFQTFLE 2303
            GDFDGD Y++S+NP+LL+++  + PW    S P  ++  R+P + S EE E ELF+ FL+
Sbjct: 692  GDFDGDMYFISRNPKLLEHFKPSEPWVS-SSKPSKIYCGRKPSELSEEELEEELFKMFLK 750

Query: 2304 TRMPNYSMADASAN-WYALMDRLLILGKNITTENEEMKSVKEKLFELIDLYYDAIDAPKS 2480
             R     +   +A+ W  +MD  L LG     E  E    K+ + +LID+YYDA+DAPK 
Sbjct: 751  ARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYER---KKNILKLIDIYYDALDAPKK 807

Query: 2481 GNKVYIPKRLKVDKFPHFLQK--KECYHSTSVLGEIYDRVEEFKAEEPTAVEIKELSAFE 2654
            G KV +P  L++  FPH++++  K  + STS+LG I+D V+   AEEP   EI +L  FE
Sbjct: 808  GAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFE 867

Query: 2655 VE-ISETCLRLWEERYRKYRFEMKEA-LNTSSESKNDLANQVITKYKQLLYEAPDMEDSV 2828
             E + ++ +  +   Y  YR EM +A + T    +N L N+VI +YKQ  Y A   EDS 
Sbjct: 868  DEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSN 927

Query: 2829 RSTSDIYNEALAIYRVTYNYAKAIGDVKKCGFAWKVAGSALCRFHAELHAKEHNQKVMAV 3008
            +S  ++Y +ALA+Y V Y+YA   G V KC FAW VAG  LC+F    + K+   K +  
Sbjct: 928  KSLEELYPQALALYNVVYDYAIQEG-VAKCTFAWNVAGPVLCKF----YLKKTKDKSVVA 982

Query: 3009 SPSVLHKLL 3035
            S SVL KLL
Sbjct: 983  STSVLKKLL 991